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MT771347.1__QOC56479.1__SEA_PAELLA_159__00159

Bact-Vir

MT771347.1__QOC56479.1__SEA_PAELLA_159__00159

Identity

Accession:
MT771347 ↗
Kingdom:
phage

Quality

88.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Arthrobacter_phage_Paella

TaxID: 2759388

Cluster

View cluster (10 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-70
PDB
Domain cluster: rep: OP756059.1__UZO33122.1__CBSLWZGG_CDS168__00169__D10-71
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u3eM01 3.90.75.20 Alpha Beta › Alpha-Beta Complex › Homing Intron 3 (I-Ppo) Encoded Endonuclease; Chain A › 0.90 82.0 6.73e-01 100.0% 58.5%
2rajA02 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.60 42.0 3.38e-01 89.1% 37.3%
3o8oF01 3.40.50.450 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.58 51.0 3.52e-01 100.0% 52.0%
5umbA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.58 50.0 3.68e-01 100.0% 82.3%
6gfaA02 3.30.30.30 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.58 43.0 4.53e-01 79.7% 100.0%
1ob8A00 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.57 43.0 3.59e-01 82.8% 88.2%
1kaxA02 3.30.30.30 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.57 41.0 4.39e-01 78.1% 100.0%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.57 41.0 4.13e-01 98.4% 75.4%
1whnA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.56 41.0 3.66e-01 81.2% 78.2%
2lqkA00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.55 40.0 3.98e-01 98.4% 75.7%
2lezA00 3.30.2450.10 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › Secreted effector protein pipB2 0.55 40.0 3.39e-01 81.2% 76.7%
1q5qH00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.55 41.0 2.99e-01 87.5% 68.8%
3wirA03 2.60.420.10 Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3 0.54 32.0 3.20e-01 89.1% 53.6%
3gdoA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.54 38.0 2.72e-01 75.0% 77.9%
2p25A01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.54 41.0 3.42e-01 84.4% 84.9%
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.53 44.0 4.20e-01 95.3% 93.3%
1vw4M01 2.30.30.790 Mainly Beta › Roll › SH3 type barrels. › 0.53 39.0 3.13e-01 79.7% 58.3%
2mjlA00 3.40.50.1470 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidyl-tRNA hydrolase 0.51 41.0 3.00e-01 92.2% 68.0%
2rjqA02 3.40.1620.60 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › 0.51 31.0 3.01e-01 71.9% 50.7%
1h10A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 42.0 3.46e-01 92.2% 79.5%
1r7lA00 3.30.2120.10 Alpha Beta › 2-Layer Sandwich › Bacillus phage protein › Bacillus phage protein-like 0.51 42.0 3.65e-01 95.3% 84.5%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4117020 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.64 39.0 4.01e-01 93.8% 63.3%
3633449 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.64 42.0 3.12e-01 89.1% 25.3%
4963287 375.1.1.334 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › HVO_0758 0.60 42.0 4.46e-01 85.9% 89.1%
3664655 601.28.1.2 ↗ alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like › PHD_Oberon 0.57 47.0 3.69e-01 100.0% 40.7%
3967506 300.1.1.8 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 0.57 49.0 3.37e-01 100.0% 72.9%
5056707 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 33.0 3.52e-01 87.5% 67.3%
5075670 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 34.0 3.77e-01 85.9% 88.4%
3581143 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.56 38.0 3.85e-01 98.4% 70.8%
3583597 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 39.0 3.58e-01 78.1% 58.9%
3821751 4.1.1.32 ↗ beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.54 46.0 4.35e-01 96.9% 77.5%
3482073 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.53 37.0 3.86e-01 76.6% 91.7%
3816553 4.1.1.306 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_VIII-1_N 0.52 32.0 3.39e-01 92.2% 70.9%
5030311 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 34.0 3.56e-01 70.3% 80.0%
4211951 2.1.1.14 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RuvA_N 0.51 42.0 3.91e-01 90.6% 85.0%
3858885 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 35.0 3.66e-01 96.9% 83.6%
4966836 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 36.0 3.73e-01 78.1% 94.5%