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MT776806.1__QNJ59322.1__SEA_MRMIYAGI_109__00108
Bact-VirMT776806.1__QNJ59322.1__SEA_MRMIYAGI_109__00108
Identity
- Accession:
- MT776806 ↗
- Kingdom:
- phage
Quality
85.9
mean pLDDT
Taxonomy
TaxID: 2762395
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-77
Domain cluster:
representative
CATH (40)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2je6A01 | 3.30.230.70 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain | 0.75 | 48.0 | 3.23e-01 | 94.4% | 18.0% |
| 3f8uB02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.67 | 59.0 | 4.84e-01 | 97.2% | 69.0% |
| 1ln0A00 | 3.40.1440.10 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.67 | 48.0 | 4.41e-01 | 76.1% | 77.2% |
| 1unnC00 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.66 | 47.0 | 4.07e-01 | 76.1% | 51.4% |
| 1sq2N00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.64 | 55.0 | 4.78e-01 | 97.2% | 72.3% |
| 4llgM00 | 3.10.20.510 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor | 0.64 | 43.0 | 4.77e-01 | 74.6% | 98.0% |
| 2ic2A00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.64 | 56.0 | 4.94e-01 | 98.6% | 69.2% |
| 1mg7A01 | 3.30.70.1000 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Switch protein XOL-1, GHMP-like | 0.63 | 53.0 | 4.07e-01 | 97.2% | 84.0% |
| 3ci0J02 | 2.10.70.20 | Mainly Beta › Ribbon › Complement Module; domain 1 › gspk-gspi-gspj complex like domains | 0.63 | 40.0 | 4.60e-01 | 95.8% | 92.0% |
| 4hkhA00 | 2.30.110.20 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like | 0.63 | 55.0 | 4.38e-01 | 100.0% | 85.9% |
| 1im3D00 | 2.60.40.1200 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.63 | 52.0 | 4.73e-01 | 100.0% | 68.4% |
| 5f1mA00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.60 | 51.0 | 3.58e-01 | 100.0% | 55.1% |
| 1dhnA00 | 3.30.1130.10 | Alpha Beta › 2-Layer Sandwich › GTP Cyclohydrolase I, domain 2 › GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain | 0.59 | 50.0 | 4.28e-01 | 97.2% | 77.7% |
| 1qysA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.59 | 48.0 | 4.50e-01 | 93.0% | 97.8% |
| 2r5rA00 | 3.10.270.10 | Alpha Beta › Roll › Urate Oxidase › Urate Oxidase; | 0.59 | 48.0 | 3.41e-01 | 95.8% | 39.8% |
| 3qfgA00 | 2.60.40.1240 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.58 | 53.0 | 4.14e-01 | 100.0% | 55.2% |
| 3fgtA01 | 2.10.70.60 | Mainly Beta › Ribbon › Complement Module; domain 1 › Phospholipase B-like, domain 1 | 0.58 | 40.0 | 4.45e-01 | 95.8% | 92.7% |
| 1ryp200 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.58 | 48.0 | 3.50e-01 | 98.6% | 85.0% |
| 4qamB00 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.58 | 51.0 | 3.83e-01 | 100.0% | 60.0% |
| 2jvfA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.58 | 49.0 | 4.53e-01 | 98.6% | 79.8% |
| 5k3xA02 | 2.60.40.650 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.57 | 48.0 | 4.23e-01 | 97.2% | 71.7% |
| 4kyzA00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.57 | 47.0 | 3.62e-01 | 93.0% | 95.2% |
| 3wnzA03 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.57 | 51.0 | 4.00e-01 | 98.6% | 75.0% |
| 1vwxS02 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.56 | 40.0 | 3.96e-01 | 76.1% | 78.9% |
| 2xtsA02 | 2.60.40.650 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.56 | 47.0 | 4.01e-01 | 100.0% | 66.9% |
| 6imjA01 | 3.30.470.30 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme | 0.56 | 48.0 | 3.61e-01 | 100.0% | 92.0% |
| 3df7A02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.55 | 51.0 | 4.00e-01 | 98.6% | 70.8% |
| 2blfA02 | 2.60.40.650 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 46.0 | 4.06e-01 | 98.6% | 69.3% |
| 2xfaA00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.55 | 47.0 | 3.84e-01 | 100.0% | 76.2% |
| 6wwdB00 | 3.90.950.10 | Alpha Beta › Alpha-Beta Complex › Maf protein › | 0.54 | 44.0 | 3.35e-01 | 94.4% | 66.3% |
| 3hx1B00 | 2.60.200.20 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.54 | 37.0 | 3.30e-01 | 73.2% | 100.0% |
| 3r5xD02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.53 | 48.0 | 3.68e-01 | 98.6% | 58.7% |
| 1y8xB00 | 3.10.290.20 | Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › Ubiquitin-like 2 activating enzyme e1b. Chain: B, domain 3 | 0.53 | 42.0 | 3.94e-01 | 98.6% | 68.5% |
| 7pupA01 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.53 | 46.0 | 3.26e-01 | 97.2% | 47.0% |
| 2jxtA01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.53 | 37.0 | 3.71e-01 | 76.1% | 78.9% |
| 2q0oA01 | 3.30.450.80 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain | 0.52 | 38.0 | 3.03e-01 | 83.1% | 45.2% |
| 5wfiA01 | 2.60.120.1680 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 35.0 | 3.00e-01 | 71.8% | 46.3% |
| 1ehiA02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.51 | 43.0 | 3.54e-01 | 100.0% | 74.3% |
| 3hkmB00 | 3.30.230.70 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain | 0.51 | 37.0 | 2.80e-01 | 81.7% | 61.5% |
| 4lvnP00 | 3.30.70.2380 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 37.0 | 3.62e-01 | 78.9% | 95.1% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3796820 | 245.1.1.0 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 | 0.69 | 47.0 | 4.46e-01 | 93.0% | 58.8% |
| 5081134 | 3986.2.1.0 ↗ | a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd | 0.68 | 50.0 | 5.35e-01 | 100.0% | 95.0% |
| 4448678 | 4.1.1.307 ↗ | beta barrels › SH3 › SH3 › SH3 › PF26132 | 0.67 | 48.0 | 4.71e-01 | 74.6% | 100.0% |
| 4029036 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.67 | 59.0 | 5.50e-01 | 100.0% | 90.0% |
| 3622513 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.66 | 46.0 | 4.97e-01 | 74.6% | 100.0% |
| 4927132 | 815.1.1.0 ↗ | a+b two layers › Chromosomal protein MC1 › Chromosomal protein MC1 › Chromosomal protein MC1 | 0.65 | 58.0 | 5.25e-01 | 100.0% | 90.5% |
| 3788749 | 6109.1.1.0 ↗ | a+b two layers › N-terminal domain of chitin biosynthesis protein CHS6 › N-terminal domain of chitin biosynthesis protein CHS6 › N-terminal domain of chitin biosynthesis protein CHS6 | 0.65 | 57.0 | 4.52e-01 | 100.0% | 50.0% |
| 3613468 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.64 | 34.0 | 3.60e-01 | 100.0% | 55.4% |
| 3972650 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.64 | 53.0 | 4.64e-01 | 93.0% | 100.0% |
| 3222813 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.63 | 49.0 | 4.57e-01 | 97.2% | 66.7% |
| 3215805 | 11.1.1.822 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF229 | 0.62 | 51.0 | 4.58e-01 | 100.0% | 65.0% |
| 4962335 | 3115.5.1.1 ↗ | a+b two layers › GP2-like › phenylacetate-CoA oxygenase subunit PaaB › phenylacetate-CoA oxygenase subunit PaaB › PaaB | 0.61 | 44.0 | 4.60e-01 | 78.9% | 84.6% |
| 2980434 | 210.1.1.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome | 0.60 | 53.0 | 3.92e-01 | 100.0% | 93.8% |
| 3705026 | 224.1.1.1 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF | 0.60 | 51.0 | 4.20e-01 | 100.0% | 75.7% |
| 4013658 | 224.1.1.0 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like | 0.59 | 50.0 | 4.11e-01 | 100.0% | 75.7% |
| 4965849 | 3435.1.1.9 ↗ | a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC › DUF4747 | 0.58 | 45.0 | 3.11e-01 | 85.9% | 87.1% |
| 3505390 | 3636.1.1.0 ↗ | a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain | 0.57 | 41.0 | 3.25e-01 | 77.5% | 96.8% |
| 4013514 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.57 | 40.0 | 3.65e-01 | 77.5% | 59.0% |
| 3346707 | 886.1.1.1 ↗ | a+b duplicates or obligate multimers › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › SOUL | 0.57 | 40.0 | 3.48e-01 | 74.6% | 79.1% |
| 3285272 | 868.1.1.1 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › CYTH | 0.57 | 43.0 | 3.29e-01 | 87.3% | 53.8% |
| 3911505 | 3570.1.1.1 ↗ | a+b two layers › FAM3 superfamily › FAM3 superfamily › FAM3 superfamily › ILEI | 0.57 | 47.0 | 3.72e-01 | 95.8% | 57.5% |
| 4967222 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.57 | 39.0 | 4.18e-01 | 74.6% | 96.7% |
| 4928585 | 230.1.1.3 ↗ | a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › PTPS | 0.56 | 46.0 | 3.73e-01 | 95.8% | 79.7% |
| 5067865 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.55 | 39.0 | 3.97e-01 | 76.1% | 85.7% |
| 4969863 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.54 | 38.0 | 3.84e-01 | 77.5% | 81.3% |
| 3621341 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.54 | 38.0 | 3.82e-01 | 76.1% | 100.0% |
| 3712990 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.54 | 34.0 | 3.47e-01 | 97.2% | 64.3% |
| 5029684 | 3570.1.1.1 ↗ | a+b two layers › FAM3 superfamily › FAM3 superfamily › FAM3 superfamily › ILEI | 0.54 | 45.0 | 3.46e-01 | 95.8% | 66.3% |
| 4889364 | 304.56.1.3 ↗ | a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › Cas3_I-F_Cas2 | 0.54 | 44.0 | 3.85e-01 | 95.8% | 65.5% |
| 3441395 | 5.1.3.159 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF7595 | 0.53 | 37.0 | 2.49e-01 | 73.2% | 96.1% |
| 3489444 | 221.7.1.1 ↗ | a+b two layers › beta-Grasp › E2-binding domain of E1 › E2-binding domain of E1 › E2_bind | 0.53 | 42.0 | 3.88e-01 | 100.0% | 66.3% |
| 3335541 | 109.4.1.2173 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, DYW_deaminase, Eplus_motif | 0.52 | 43.0 | 2.80e-01 | 94.4% | 29.0% |
| 4322161 | 7504.1.1.1 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Ham1p_like | 0.51 | 43.0 | 3.29e-01 | 100.0% | 44.0% |
| 3592513 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.51 | 43.0 | 2.83e-01 | 98.6% | 42.3% |
| 3649489 | 109.4.1.1267 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif | 0.51 | 37.0 | 2.06e-01 | 77.5% | 5.7% |