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MT778837.1__QNH71544.1__AF3_126__00126

Bact-Vir

MT778837.1__QNH71544.1__AF3_126__00126

Identity

Accession:
MT778837 ↗
Kingdom:
phage

Quality

80.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pootjesviridae› Innesvirus› Rhizobium_phage_AF3

TaxID: 2763529

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-85
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4mcxF00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.69 36.0 3.45e-01 84.6% 42.9%
2vpaA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.69 54.0 4.00e-01 84.6% 68.6%
5cw7B00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.68 37.0 3.52e-01 88.5% 44.7%
6n90A00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.65 38.0 3.71e-01 89.7% 51.1%
4nsxA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 44.0 2.91e-01 73.1% 37.3%
4hscX04 2.60.40.1430 Mainly Beta › Sandwich › Immunoglobulin-like › Perfringolysin, domain 4 0.57 41.0 3.74e-01 78.2% 84.5%
4r7rA00 3.30.1490.410 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Uncharacterised protein PF16224, DUF4883 0.56 42.0 3.69e-01 82.1% 61.5%
3mmyA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 44.0 2.97e-01 94.9% 87.6%
7bjkA02 3.55.40.20 Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain 0.53 39.0 3.55e-01 100.0% 56.6%
4gzvA00 2.40.128.490 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF14869 family, DUF4488 0.52 43.0 3.57e-01 97.4% 51.1%
5hy7B01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 47.0 2.93e-01 100.0% 23.5%
6yleA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 45.0 2.87e-01 97.4% 23.7%
3oblA00 2.40.128.450 Mainly Beta › Beta Barrel › Lipocalin › 0.51 41.0 3.40e-01 97.4% 50.8%
3ei3A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 43.0 2.82e-01 93.6% 22.3%
7wrgA02 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.51 42.0 3.55e-01 100.0% 53.8%
4pfyA02 3.90.76.10 Alpha Beta › Alpha-Beta Complex › Dipeptide-binding Protein; domain 1 › Dipeptide-binding Protein; Domain 1 0.50 39.0 3.23e-01 84.6% 78.2%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3409682 216.1.1.10 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › FANCL_d3 0.70 42.0 3.70e-01 84.6% 40.9%
3960877 295.1.1.27 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PF25991 0.65 44.0 4.60e-01 92.3% 77.1%
3286384 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.65 47.0 4.01e-01 100.0% 48.0%
4258822 12.3.1.61 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › PF25837 0.61 47.0 3.44e-01 84.6% 44.1%
5062370 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 51.0 4.24e-01 100.0% 53.3%
4183729 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.59 41.0 3.39e-01 98.7% 38.6%
3166677 3792.1.1.0 ↗ beta sandwiches › 26S proteasome subunit Rpn2 C-terminal domain › 26S proteasome subunit Rpn2 C-terminal domain › 26S proteasome subunit Rpn2 C-terminal domain 0.59 41.0 4.05e-01 73.1% 69.4%
4947703 312.1.1.0 ↗ a+b three layers › HIT-like › HIT-related › HIT-related 0.57 44.0 3.68e-01 84.6% 77.9%
3457412 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.57 47.0 3.29e-01 93.6% 68.1%
3731217 4291.1.1.1 ↗ beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP 0.55 43.0 2.69e-01 84.6% 15.3%
3423079 5.1.4.231 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FBA_3 0.54 47.0 3.18e-01 97.4% 37.1%
4042932 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.53 42.0 3.00e-01 85.9% 72.9%
3377737 4.1.1.302 ↗ beta barrels › SH3 › SH3 › SH3 › tSH3-B_UBE2O 0.53 41.0 3.70e-01 82.1% 81.9%
3973135 296.1.1.0 ↗ a+b three layers › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 0.53 46.0 4.17e-01 100.0% 79.1%
3256845 5.1.4.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,ANAPC4_WD40 0.53 46.0 2.82e-01 94.9% 17.0%
3726081 2484.1.1.192 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF8340_N 0.52 45.0 3.22e-01 98.7% 32.5%
3185906 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 41.0 2.65e-01 92.3% 42.1%
5080306 300.1.1.0 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease 0.51 42.0 3.36e-01 92.3% 65.5%
5059545 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.51 40.0 2.72e-01 87.2% 67.9%
3592074 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.50 43.0 2.48e-01 97.4% 11.2%