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MT778838.1QNH71693.1V1VFAS_073__00070

Bact-Vir

MT778838.1__QNH71693.1__V1VFAS_073__00070

Identity

Accession:: MT778838 ↗
Kingdom:: phage

Quality

84.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Rhizobium_phage_V1VFA-S

TaxID: 2763532

Cluster

View cluster (80 members)

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 8-78_151-161

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04883.18 best	HK97-gp10_like	28.3	4.00e-06	93.9%	82.0%

CATH (11)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3b8oA01	3.30.1890.10	Alpha Beta › 2-Layer Sandwich › Bacterial polysaccharide co-polymerase-like › FepE-like	0.68	50.0	3.65e-01	79.3%	29.1%
2oarB00	1.10.1200.120	Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Large-conductance mechanosensitive channel, MscL; domain 1	0.66	48.0	4.13e-01	75.6%	74.4%
6i9gA01	3.30.2400.30	Alpha Beta › 2-Layer Sandwich › Major capsid protein gp5 fold ›	0.65	45.0	3.59e-01	73.2%	48.5%
6l3tA01	1.20.1440.80	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Gap junction channel protein cysteine-rich domain	0.64	45.0	3.40e-01	74.4%	44.7%
2o8bB04	1.10.1420.10	Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 ›	0.59	43.0	3.68e-01	78.0%	55.0%
4opcA00	3.50.50.60	Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain	0.56	43.0	2.76e-01	85.4%	29.9%
3venA02	3.30.420.40	Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain	0.56	41.0	2.93e-01	76.8%	37.7%
1d0xA04	1.20.120.720	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain	0.55	42.0	3.50e-01	79.3%	73.0%
1exzB00	1.20.1250.10	Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; ›	0.52	38.0	3.22e-01	78.0%	52.1%
4l00A02	1.10.510.10	Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1	0.52	36.0	2.86e-01	73.2%	91.7%
3aonA00	1.10.287.3240	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.51	46.0	3.49e-01	100.0%	67.0%

ECOD (31)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3244833	3914.1.1.2 ↗	alpha bundles › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain › Anoctamin,Anoct_dimer	0.79	56.0	3.23e-01	73.2%	9.9%
3584696	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.75	51.0	2.97e-01	70.7%	9.6%
3170708	632.1.1.6 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain › Pho88	0.66	52.0	4.29e-01	84.1%	87.6%
5071300	601.27.1.0 ↗	alpha bundles › Four-helical up-and-down bundle › MW0975(SA0943)-like › MW0975(SA0943)-like	0.65	48.0	3.67e-01	78.0%	83.9%
3474254	316.1.1.0 ↗	a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase	0.64	30.0	2.52e-01	100.0%	26.7%
4959599	101.1.2.48 ↗	alpha arrays › HTH › HTH › winged helix domain › PadR	0.63	37.0	3.30e-01	100.0%	42.1%
4310295	6166.1.1.1 ↗	alpha bundles › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › ERG4_ERG24	0.63	44.0	3.07e-01	72.0%	73.5%
3837772	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.63	45.0	3.20e-01	74.4%	92.2%
3937147	5001.1.1.41 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw	0.60	53.0	3.46e-01	98.8%	65.4%
4303957	2006.1.6.15 ↗	a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › DUF58	0.60	37.0	2.92e-01	80.5%	32.9%
5019036	5050.1.1.9 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1	0.59	47.0	3.43e-01	86.6%	81.3%
5036589	192.2.1.2 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin	0.58	53.0	4.46e-01	100.0%	79.3%
3486431	304.48.1.0 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like	0.57	49.0	3.29e-01	95.1%	25.4%
3404153	210.2.1.0 ↗	a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain	0.56	41.0	2.65e-01	76.8%	46.2%
3274367	2484.1.1.1 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70	0.53	46.0	3.58e-01	98.8%	65.3%
3203652	2484.1.1.1 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70	0.53	45.0	2.99e-01	98.8%	33.6%
4012654	2484.1.1.0 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like	0.53	46.0	3.45e-01	98.8%	59.0%
3924463	2484.1.1.1 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70	0.53	46.0	3.37e-01	100.0%	58.3%
4417272	5054.1.1.6 ↗	alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH	0.52	41.0	3.43e-01	82.9%	89.6%
5020322	2484.1.1.1 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70	0.52	45.0	3.39e-01	98.8%	57.7%
3598526	2484.1.1.1 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70	0.52	44.0	3.21e-01	98.8%	49.6%
3258353	2484.1.1.1 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70	0.52	45.0	3.48e-01	100.0%	62.5%
4885979	511.1.1.1 ↗	beta sandwiches › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › HSP70	0.52	45.0	3.39e-01	98.8%	59.0%
3847309	2484.1.1.1 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70	0.52	45.0	3.40e-01	98.8%	59.0%
4382858	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.52	40.0	2.49e-01	87.8%	13.7%
4539356	2484.1.1.1 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70	0.52	43.0	2.92e-01	98.8%	34.9%
3476114	2484.1.1.1 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70	0.52	45.0	2.92e-01	98.8%	30.1%
3263845	2484.1.1.1 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70	0.51	44.0	2.76e-01	98.8%	24.3%
3631253	2484.1.1.206 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70, FGGY_C	0.51	44.0	3.34e-01	98.8%	59.0%
3653056	2484.1.1.1 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70	0.51	44.0	3.20e-01	100.0%	43.5%
3548525	109.4.1.906 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › N-HEAT_ATR	0.50	36.0	2.37e-01	76.8%	34.2%

D2 medium residues 79-150

PDB

Domain cluster: representative

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1vx7L02	6.10.250.1480	Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces ›	0.54	27.0	3.28e-01	97.2%	79.5%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3938698	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.64	33.0	3.52e-01	86.1%	56.9%