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MT778838.1__QNH71728.1__V1VFAS_120__00117

Bact-Vir

MT778838.1__QNH71728.1__V1VFAS_120__00117

Identity

Accession:
MT778838 ↗
Kingdom:
phage

Quality

85.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Rhizobium_phage_V1VFA-S

TaxID: 2763532

Cluster

View cluster (11 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-98
PDB
Domain cluster: rep: IMGVR_UViG_3300030091_000003-3300030091-Ga0188179_1035714__D17-102
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4iy0A00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.66 45.0 3.84e-01 100.0% 44.1%
1vr9A02 3.10.20.750 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.65 38.0 4.62e-01 96.9% 100.0%
3jtfA01 3.90.1280.20 Alpha Beta › Alpha-Beta Complex › CBS domain Like › 0.64 34.0 4.06e-01 76.3% 78.7%
3lv9A00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.64 41.0 3.75e-01 100.0% 48.5%
2zyzC00 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.63 36.0 3.63e-01 73.2% 54.2%
3gbyA00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.63 42.0 3.83e-01 100.0% 51.2%
6h1wA01 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.63 40.0 3.79e-01 100.0% 53.0%
4dqwA02 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.62 40.0 3.80e-01 100.0% 54.9%
2rihA00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.62 42.0 3.80e-01 100.0% 51.1%
5iipA00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.62 39.0 3.70e-01 100.0% 52.6%
3jtfA02 3.90.1280.20 Alpha Beta › Alpha-Beta Complex › CBS domain Like › 0.61 39.0 4.50e-01 99.0% 98.4%
2j9lF01 3.90.1280.20 Alpha Beta › Alpha-Beta Complex › CBS domain Like › 0.61 36.0 4.01e-01 87.6% 75.3%
2o16B00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.61 40.0 3.66e-01 100.0% 48.9%
5yk4A04 1.10.1420.10 Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › 0.61 34.0 3.11e-01 96.9% 39.0%
3hf7A00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.60 40.0 3.68e-01 100.0% 52.0%
3ocoA00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.60 40.0 3.60e-01 100.0% 47.8%
3fv6A00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.60 41.0 3.61e-01 100.0% 46.9%
3fhmA00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.60 40.0 3.64e-01 100.0% 49.3%
4hg0A01 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.59 39.0 3.45e-01 100.0% 44.2%
3pc3A03 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.59 40.0 3.57e-01 100.0% 47.2%
3i8nB00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.58 38.0 3.56e-01 100.0% 51.6%
2gk4A00 3.40.50.10300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › CoaB-like 0.57 35.0 2.69e-01 100.0% 24.9%
3mazA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.57 33.0 3.30e-01 100.0% 53.5%
1b77A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.57 42.0 3.20e-01 78.4% 51.3%
3ddjA02 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.57 40.0 3.61e-01 100.0% 51.0%
4d10F01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.57 38.0 3.15e-01 100.0% 37.4%
4bc3A02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.57 44.0 3.52e-01 85.6% 96.6%
1x6vA02 3.10.400.10 Alpha Beta › Roll › Sulfate adenylyltransferase › Sulfate adenylyltransferase 0.56 49.0 4.24e-01 100.0% 82.9%
2uv8A06 3.30.70.2490 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 30.0 3.47e-01 77.3% 74.6%
2ci9B00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.55 31.0 3.12e-01 100.0% 52.0%
2cu2A00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.53 47.0 3.26e-01 100.0% 73.1%
2z0rA00 3.40.1350.90 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › Uncharacterised protein PF11572, DUF3234 0.51 38.0 3.81e-01 77.3% 76.3%
2cxhA01 3.40.50.10480 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Brix domain 0.51 40.0 3.30e-01 100.0% 47.1%
6em3x01 3.40.50.10480 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Brix domain 0.50 39.0 3.09e-01 100.0% 42.7%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3827344 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.67 43.0 3.52e-01 100.0% 34.6%
3372991 282.1.1.0 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain 0.66 43.0 3.38e-01 100.0% 31.2%
3878734 282.1.1.0 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain 0.66 44.0 4.04e-01 100.0% 51.5%
3597084 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.66 46.0 3.75e-01 100.0% 38.9%
3770663 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.65 44.0 3.52e-01 100.0% 34.4%
3581149 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.65 44.0 3.73e-01 100.0% 41.2%
3633381 282.1.1.0 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain 0.65 43.0 3.49e-01 100.0% 35.5%
3262485 282.1.1.0 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain 0.64 43.0 3.47e-01 100.0% 34.4%
3212054 282.1.1.0 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain 0.64 48.0 3.86e-01 100.0% 41.6%
3621205 282.1.1.0 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain 0.64 44.0 3.77e-01 100.0% 44.0%
4973814 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.63 42.0 3.87e-01 100.0% 51.5%
3578836 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.63 44.0 3.89e-01 100.0% 49.7%
5070317 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.62 42.0 3.86e-01 100.0% 52.3%
4927241 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.62 42.0 3.78e-01 100.0% 50.4%
5068258 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.61 42.0 3.77e-01 100.0% 50.4%
3416893 2008.6.1.1 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Acetyl-CoA carboxylase AC4 and AC5 domains › Acetyl-CoA carboxylase AC4 and AC5 domains › ACC_central 0.61 42.0 3.25e-01 100.0% 30.9%
3409450 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.60 41.0 3.59e-01 100.0% 46.2%
3317951 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.60 41.0 3.33e-01 100.0% 36.2%
5003427 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.60 39.0 3.35e-01 100.0% 39.4%
3220699 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.59 43.0 3.80e-01 100.0% 50.0%
4994427 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.59 40.0 3.67e-01 100.0% 52.3%
3961075 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.59 40.0 3.37e-01 100.0% 40.0%
3783360 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.59 40.0 3.40e-01 100.0% 41.2%
3218023 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.59 45.0 3.60e-01 100.0% 41.0%
4928779 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.58 51.0 4.42e-01 100.0% 66.5%
3418029 1.1.9.16 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_2 0.58 51.0 4.25e-01 100.0% 78.3%
3958940 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.56 50.0 4.41e-01 100.0% 71.0%
4000167 2008.6.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Acetyl-CoA carboxylase AC4 and AC5 domains › Acetyl-CoA carboxylase AC4 and AC5 domains 0.54 36.0 3.21e-01 100.0% 43.9%
5083501 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.53 44.0 4.55e-01 100.0% 100.0%
3678795 282.1.1.0 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain 0.52 47.0 3.77e-01 100.0% 57.4%
4954519 7502.1.1.0 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.51 38.0 3.26e-01 100.0% 49.7%
4956492 7502.1.1.0 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.51 40.0 3.27e-01 100.0% 46.3%
10328 7502.1.1.0 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.51 40.0 3.26e-01 100.0% 45.6%
5032068 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.51 37.0 3.76e-01 100.0% 77.9%