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MT778840.1__QNH72036.1__P11VFA_107__00107

Bact-Vir

MT778840.1__QNH72036.1__P11VFA_107__00107

Identity

Accession:
MT778840 ↗
Kingdom:
phage

Quality

53.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Rhizobium_phage_P11VFA

TaxID: 2763530

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 224-387
PDB
Domain cluster: rep: BK061476.1__DBA08236.1__X__00008__D134-245
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF20155.5 best TMP_3 189.3 8.50e-56 100.0% 84.4%
D2 high residues 1223-1366
PDB
Domain cluster: rep: SR-VP_2-4_scaffold_141_2952615_prodigal-single.1__X__X__00274__D10-149
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2vo9A01 3.30.1380.10 Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › 0.69 57.0 5.92e-01 85.4% 96.2%
4d0yA00 3.30.1380.10 Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › 0.59 49.0 4.47e-01 86.8% 73.9%
5cs2A00 3.30.428.10 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like 0.58 41.0 4.15e-01 87.5% 71.4%
1emsA02 3.30.428.10 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like 0.58 41.0 4.27e-01 87.5% 80.8%
6yiiA02 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.57 47.0 4.12e-01 86.8% 71.8%
3anoA00 3.30.428.10 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like 0.56 40.0 3.89e-01 86.8% 65.2%
7vb8A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 31.0 3.46e-01 79.2% 68.1%
1lqlA02 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.54 36.0 4.17e-01 75.0% 95.1%
5oyhD00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.54 46.0 4.19e-01 90.3% 79.5%
2wweA01 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.53 27.0 3.07e-01 85.4% 62.5%
4f0qA02 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.53 38.0 3.49e-01 90.3% 55.7%
3hv8A00 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.51 36.0 3.04e-01 70.8% 57.9%
2hp7A00 3.40.1550.10 Alpha Beta › 3-Layer(aba) Sandwich › Chemotaxis protein chec › CheC-like 0.51 39.0 3.64e-01 79.2% 92.2%
2a2cA01 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.51 45.0 3.91e-01 96.5% 80.4%
1coyA02 3.30.410.10 Alpha Beta › 2-Layer Sandwich › Cholesterol Oxidase; domain 2 › Cholesterol Oxidase; domain 2 0.51 39.0 3.82e-01 79.9% 97.4%
5xgbA03 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.51 35.0 2.99e-01 71.5% 60.2%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4861717 307.1.1.11 ↗ a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › PF31190 0.74 58.0 6.23e-01 87.5% 93.6%
2448156 307.1.1.6 ↗ a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Peptidase_M15_4 0.68 57.0 5.61e-01 86.8% 85.4%
4468299 327.4.1.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › YhbC-like, N-terminal domain › YhbC-like, N-terminal domain › RimP_N 0.67 40.0 5.01e-01 72.9% 98.8%
4127795 307.1.1.2 ↗ a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Peptidase_M15 0.66 57.0 4.81e-01 91.7% 89.9%
3961855 307.1.1.2 ↗ a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Peptidase_M15 0.65 54.0 4.79e-01 86.8% 85.5%
3910954 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.65 38.0 4.45e-01 74.3% 83.0%
3205223 307.1.1.9 ↗ a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › VldE 0.64 49.0 5.44e-01 80.6% 100.0%
4000111 2004.1.1.87 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.61 42.0 3.58e-01 88.9% 44.0%
3877250 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 37.0 4.37e-01 70.1% 90.5%
3258882 309.1.2.0 ↗ a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › ThrRS/AlaRS editing domain 0.60 47.0 4.47e-01 81.2% 98.2%
4307364 878.1.1.6 ↗ a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › PF29774 0.59 44.0 4.77e-01 77.8% 100.0%
5014624 316.1.1.2 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.58 39.0 4.50e-01 72.2% 94.2%
5024844 312.1.1.2 ↗ a+b three layers › HIT-like › HIT-related › HIT-related › HIT 0.57 41.0 4.15e-01 87.5% 75.7%
5058508 7515.1.1.6 ↗ a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Phosphodiest 0.54 44.0 3.11e-01 86.1% 77.4%
4228401 314.1.1.11 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA_synthFbeta 0.53 39.0 3.46e-01 76.4% 92.9%
4977050 312.1.1.2 ↗ a+b three layers › HIT-like › HIT-related › HIT-related › HIT 0.53 41.0 3.85e-01 87.5% 66.3%
5050028 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.53 35.0 3.23e-01 79.2% 50.8%
5072685 873.1.1.20 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › DUF6125 0.52 36.0 3.45e-01 77.1% 59.4%
3406523 316.1.1.6 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Mab-21 0.51 44.0 3.84e-01 93.1% 83.6%
3386970 2004.1.1.293 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_15 0.51 42.0 3.14e-01 88.2% 36.6%
137904 642.1.1.1 ↗ a+b three layers › Suppressor of Fused, N-terminal domain › Suppressor of Fused, N-terminal domain › Suppressor of Fused, N-terminal domain › SUFU 0.51 42.0 3.94e-01 90.3% 96.2%
3967298 2002.5.1.1 ↗ a/b barrels › TIM beta/alpha-barrel › EAL domain › EAL domain › EAL 0.51 35.0 2.97e-01 71.5% 62.4%
D3 medium residues 1-134
PDB
D4 medium residues 594-727
PDB
D5 medium residues 732-758_772-793
PDB
D6 medium residues 1386-1448
PDB