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MT778840.1__QNH72124.1__P11VFA_154__00154

Bact-Vir

MT778840.1__QNH72124.1__P11VFA_154__00154

Identity

Accession:
MT778840 ↗
Kingdom:
phage

Quality

67.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Rhizobium_phage_P11VFA

TaxID: 2763530

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-56
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4gczA03 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.80 68.0 6.45e-01 92.7% 90.8%
2gv9A05 1.10.287.690 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain 0.75 63.0 6.15e-01 90.9% 84.7%
2lfrA00 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.75 61.0 4.86e-01 98.2% 45.0%
4toiA02 1.10.287.610 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.75 59.0 6.20e-01 87.3% 100.0%
1yg2A02 6.10.140.190 Special › Helix non-globular › Helix Hairpins › 0.74 66.0 5.59e-01 100.0% 63.3%
4fxdA04 3.90.1600.10 Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain 0.73 64.0 4.69e-01 100.0% 68.6%
4h63K00 1.10.287.3490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.73 64.0 5.27e-01 98.2% 59.2%
3sfvB02 6.10.140.2010 Special › Helix non-globular › Helix Hairpins › 0.69 62.0 4.21e-01 100.0% 51.0%
2zt5A02 3.30.40.230 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › 0.68 47.0 4.10e-01 72.7% 57.1%
4cpgA00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.68 51.0 4.75e-01 87.3% 65.2%
1x04A00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.67 58.0 4.02e-01 100.0% 41.0%
4nb5B02 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.67 55.0 5.31e-01 98.2% 98.4%
1kf6C00 1.20.1300.10 Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit 0.64 57.0 4.34e-01 100.0% 56.2%
4bpxD00 1.20.930.80 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › 0.61 54.0 3.65e-01 100.0% 85.0%
1w36B01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.59 53.0 3.41e-01 100.0% 40.3%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4143122 7023.1.1.3 ↗ alpha bundles › helical ridge domain of D-alanyl transfer protein › helical ridge domain of D-alanyl transfer protein › helical ridge domain of D-alanyl transfer protein › MBOAT_2 0.80 71.0 4.69e-01 100.0% 25.5%
3960219 605.1.1.1 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.80 68.0 6.12e-01 94.5% 78.7%
3690466 559.1.1.0 ↗ alpha duplicates or obligate multimers › H-NS histone-like proteins, N-terminal domain › H-NS histone-like proteins, N-terminal domain › H-NS histone-like proteins, N-terminal domain 0.80 71.0 6.58e-01 100.0% 84.3%
3426374 150.5.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like 0.76 53.0 6.08e-01 74.5% 100.0%
3644495 7022.1.1.0 ↗ alpha bundles › central core domain of D-alanyl transfer protein › central core domain of D-alanyl transfer protein › central core domain of D-alanyl transfer protein 0.75 66.0 5.11e-01 100.0% 44.0%
4965021 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.75 65.0 6.51e-01 94.5% 94.5%
3763555 109.4.1.1505 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ARM_FBXO47 0.74 65.0 4.30e-01 96.4% 30.5%
3803573 7022.1.1.0 ↗ alpha bundles › central core domain of D-alanyl transfer protein › central core domain of D-alanyl transfer protein › central core domain of D-alanyl transfer protein 0.74 64.0 4.31e-01 100.0% 26.0%
3436931 192.6.1.11 ↗ alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain › eIF-3c_N 0.72 58.0 4.69e-01 92.7% 47.3%
3994520 11.12.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD,Neur_chan_memb 0.71 56.0 3.55e-01 87.3% 18.2%
3482751 192.1.1.0 ↗ alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain 0.70 57.0 5.49e-01 92.7% 80.0%
4336724 192.7.1.2 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.68 58.0 4.69e-01 98.2% 49.1%
4395525 192.4.1.1 ↗ alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) › Ribosomal_L29 0.67 56.0 5.34e-01 94.5% 83.1%
3226747 3456.1.1.1 ↗ extended segments › NADH-quinone oxidoreductase subunit A › NADH-quinone oxidoreductase subunit A › NADH-quinone oxidoreductase subunit A › Oxidored_q4 0.62 50.0 4.10e-01 92.7% 48.2%
1172174 221.8.1.2 ↗ a+b two layers › beta-Grasp › GfcC › GfcC › Caps_syn_GfcC_N 0.59 47.0 3.66e-01 87.3% 39.2%
D2 medium residues 64-126
PDB