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MT799840.1__QNI20771.1__X__00052

Bact-Vir

MT799840.1__QNI20771.1__X__00052

Identity

Accession:
MT799840 ↗
Kingdom:
phage

Quality

75.2 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-91
PDB
Domain cluster: representative
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3d6wB02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.73 34.0 4.63e-01 89.8% 97.4%
5ajiB02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.70 34.0 4.30e-01 96.6% 80.0%
7razA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.70 34.0 3.45e-01 95.5% 45.9%
1nr4C00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.66 38.0 4.30e-01 100.0% 75.8%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.62 30.0 3.81e-01 97.7% 81.2%
1zxtA01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.62 36.0 4.20e-01 100.0% 83.6%
2ldmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 30.0 3.72e-01 96.6% 75.5%
4hcsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 37.0 4.20e-01 100.0% 82.1%
2heqA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 31.0 3.68e-01 98.9% 77.8%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 33.0 3.74e-01 93.2% 74.2%
1eigA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 35.0 3.83e-01 100.0% 71.2%
2mp1A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 35.0 3.75e-01 100.0% 67.5%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 30.0 3.29e-01 100.0% 59.4%
1f44A01 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.57 42.0 3.30e-01 79.5% 43.3%
1onfA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 33.0 2.99e-01 100.0% 43.2%
1y13A00 3.30.479.10 Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › 6-pyruvoyl tetrahydropterin synthase/QueD 0.56 40.0 3.28e-01 75.0% 84.7%
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 42.0 4.29e-01 96.6% 81.6%
2vknA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 30.0 3.42e-01 100.0% 69.7%
3kbgA02 2.40.50.740 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain 0.55 33.0 4.15e-01 93.2% 100.0%
4q66D01 6.20.120.50 Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 30.0 3.30e-01 72.7% 63.0%
4m8aA00 3.30.720.210 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.55 36.0 3.99e-01 100.0% 88.1%
4z32A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 39.0 3.80e-01 100.0% 68.8%
1w1hD00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 39.0 3.48e-01 97.7% 51.8%
4bs9A01 3.90.930.60 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.53 43.0 4.26e-01 92.0% 91.6%
5xbfA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 38.0 3.85e-01 98.9% 76.1%
1whzA00 3.30.920.30 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. 0.52 35.0 3.91e-01 89.8% 88.4%
5t1dB00 3.10.390.20 Alpha Beta › Roll › SAND domain › Viral glycoprotein L 0.51 37.0 3.60e-01 97.7% 68.7%
3oyyA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 35.0 3.96e-01 96.6% 98.5%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.50 31.0 3.43e-01 93.2% 78.6%
4bpnW02 2.40.50.740 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain 0.50 30.0 3.68e-01 88.6% 100.0%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4172704 4.8.1.5 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.77 40.0 4.93e-01 100.0% 81.8%
4981036 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.71 33.0 4.38e-01 94.3% 84.4%
3990001 4.8.1.5 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.69 38.0 4.60e-01 100.0% 86.8%
5035934 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.67 33.0 3.77e-01 94.3% 61.5%
3404643 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 34.0 3.74e-01 98.9% 60.0%
5060461 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 40.0 4.27e-01 94.3% 70.7%
4940177 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 43.0 4.79e-01 76.1% 88.6%
4658740 220.1.1.82 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_6 0.62 39.0 4.20e-01 90.9% 74.7%
3571487 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 33.0 3.55e-01 97.7% 61.6%
3023763 6020.1.1.1 a+b two layers › Beta domain of DivIB/FtsQ › Beta domain of DivIB/FtsQ › Beta domain of DivIB/FtsQ › FtsQ_DivIB_C 0.60 36.0 3.17e-01 75.0% 40.2%
1145920 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.59 30.0 3.11e-01 98.9% 48.2%
5001380 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 47.0 4.88e-01 86.4% 98.8%
3547186 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 40.0 3.62e-01 92.0% 50.4%
3939128 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 41.0 3.80e-01 92.0% 59.1%
5022356 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.57 33.0 4.05e-01 93.2% 90.9%
3606563 719.2.1.1 beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N 0.57 43.0 3.81e-01 87.5% 54.6%
3797728 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 40.0 4.11e-01 88.6% 75.3%
4980465 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 41.0 4.13e-01 96.6% 73.3%
3624498 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 41.0 3.68e-01 92.0% 53.6%
3513810 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 40.0 3.52e-01 92.0% 48.9%
3773509 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.55 35.0 4.05e-01 90.9% 96.7%
3924808 719.2.1.0 beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like 0.55 36.0 3.81e-01 94.3% 75.0%
3782325 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.54 30.0 3.42e-01 100.0% 73.0%
3715045 292.2.1.0 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.54 35.0 3.87e-01 90.9% 82.9%
4043931 2.1.1.9 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S4e 0.53 35.0 4.03e-01 95.5% 98.3%
3995153 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 36.0 3.47e-01 98.9% 61.0%
2890675 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.52 29.0 3.30e-01 98.9% 73.4%
3998421 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.52 36.0 3.99e-01 95.5% 96.9%
3839435 330.9.1.0 a+b two layers › dsRBD-like › C-terminal domain in LINE-1 ORF1p › C-terminal domain in LINE-1 ORF1p 0.51 33.0 3.50e-01 92.0% 76.0%
3478983 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 41.0 3.91e-01 100.0% 75.2%
3529708 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.51 29.0 3.15e-01 100.0% 65.3%
3713703 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 41.0 3.77e-01 100.0% 67.8%
3256547 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 38.0 3.68e-01 80.7% 77.0%
3690811 220.1.1.67 beta barrels › PH domain-like › PH domain-like › PH domain-like › EVH1_PP4R3 0.51 41.0 3.97e-01 100.0% 81.0%
3576021 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.51 40.0 3.58e-01 97.7% 59.2%
3765005 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.50 41.0 2.51e-01 100.0% 12.1%
3451441 220.1.1.29 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_3 0.50 39.0 3.55e-01 96.6% 61.0%
3193273 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.50 35.0 2.25e-01 73.9% 21.3%
3630302 220.1.1.22 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.50 39.0 3.71e-01 95.5% 69.1%
D2 high residues 101-194
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3axgK00 3.60.70.12 Alpha Beta › 4-Layer Sandwich › L-amino peptidase D-ALA esterase/amidase › L-amino peptidase D-ALA esterase/amidase 0.56 48.0 3.30e-01 95.7% 81.0%
2os5A00 3.30.429.10 Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor 0.56 39.0 3.70e-01 73.4% 83.1%
2x49A01 3.40.30.60 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › FHIPEP family, domain 1 0.56 38.0 3.83e-01 84.0% 67.7%
3ajvC02 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.55 38.0 3.92e-01 80.9% 73.6%
4efaE02 3.30.2320.30 Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › ATP synthase, E subunit, C-terminal 0.55 38.0 3.50e-01 84.0% 52.7%
2kpiA01 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.54 24.0 3.49e-01 74.5% 100.0%
4lhpF00 3.30.429.10 Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor 0.54 38.0 3.50e-01 75.5% 83.8%
2xkbL00 3.40.50.1440 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Tubulin/FtsZ, GTPase domain 0.54 45.0 3.02e-01 93.6% 42.2%
1mwwB00 3.30.429.10 Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor 0.53 38.0 3.54e-01 74.5% 89.0%
4i1tA02 3.30.70.2640 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Arenavirus RNA polymerase 0.53 36.0 3.80e-01 70.2% 100.0%
2aajA00 3.30.429.10 Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor 0.53 38.0 3.44e-01 75.5% 85.3%
1vw5B00 3.30.429.10 Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor 0.52 37.0 3.50e-01 74.5% 88.5%
1otgA00 3.30.429.10 Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor 0.51 36.0 3.37e-01 75.5% 87.2%
2kz0A01 3.30.300.90 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › BolA-like 0.51 36.0 3.93e-01 80.9% 98.6%
4m1aA00 3.30.429.10 Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor 0.51 36.0 3.49e-01 74.5% 86.0%
4bpeC01 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.50 34.0 3.49e-01 70.2% 89.1%
3i9v202 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.50 34.0 3.34e-01 87.2% 62.3%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5044279 298.4.1.1 a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › vATP-synt_E 0.65 40.0 3.59e-01 79.8% 44.4%
3944555 2008.1.1.103 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Transposase_31 0.62 49.0 4.18e-01 85.1% 70.7%
4010660 2008.1.1.103 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Transposase_31 0.60 47.0 4.10e-01 85.1% 73.1%
4477991 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.59 45.0 3.36e-01 81.9% 59.6%
4992866 3464.1.1.1 extended segments › Helical region in V-type proton ATPase subunit E › Helical region in V-type proton ATPase subunit E › Helical region in V-type proton ATPase subunit E › vATP-synt_E 0.57 38.0 3.15e-01 83.0% 37.6%
3599231 563.1.1.1 alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase › OSCP 0.56 49.0 3.87e-01 96.8% 81.5%
4350516 2008.1.1.6 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 0.55 42.0 4.11e-01 80.9% 83.5%
4972086 301.2.1.0 a+b three layers › Bacillus chorismate mutase-like › PurM N-terminal domain-like › PurM N-terminal domain-like 0.55 46.0 3.57e-01 94.7% 67.4%
3942955 315.1.1.5 a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF › Tautomerase_2 0.55 40.0 3.62e-01 76.6% 85.6%
5074365 7584.1.1.1 a/b three-layered sandwiches › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › AMP-binding 0.54 41.0 3.52e-01 100.0% 48.1%
3241339 246.3.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos 0.54 40.0 3.07e-01 78.7% 83.1%
141372 2008.2.1.1 a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo 0.54 37.0 3.82e-01 81.9% 73.6%
4045130 315.1.1.9 a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF › Tautomerase, Tautomerase_2 0.54 39.0 3.58e-01 76.6% 85.6%
3784966 327.7.1.0 a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like 0.54 39.0 3.84e-01 75.5% 94.0%
4880596 315.1.1.5 a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF › Tautomerase_2 0.53 38.0 3.52e-01 75.5% 93.7%
4936 315.1.1.9 a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF › Tautomerase, Tautomerase_2 0.53 38.0 3.46e-01 75.5% 85.2%
143091 315.1.1.9 a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF › Tautomerase, Tautomerase_2 0.53 38.0 3.47e-01 76.6% 83.2%
3003327 315.1.1.5 a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF › Tautomerase_2 0.53 38.0 3.58e-01 76.6% 84.0%
3605286 2008.2.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like 0.52 40.0 3.99e-01 83.0% 80.0%
3176440 327.7.1.0 a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like 0.52 37.0 3.61e-01 74.5% 95.2%
3702514 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.52 36.0 2.33e-01 72.3% 30.7%
2080133 3521.1.1.0 a+b three layers › Polymerase basic protein 2 cap-binding domain › Polymerase basic protein 2 cap-binding domain › Polymerase basic protein 2 cap-binding domain 0.52 40.0 3.94e-01 85.1% 79.6%
4932970 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.52 38.0 3.67e-01 83.0% 68.6%
4960310 7584.1.1.1 a/b three-layered sandwiches › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › AMP-binding 0.51 40.0 2.61e-01 85.1% 24.7%
3287861 327.7.1.4 a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › Asp23 0.51 36.0 3.33e-01 72.3% 88.3%
4366690 327.7.1.4 a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › Asp23 0.51 36.0 3.41e-01 75.5% 87.5%
4197017 301.6.1.4 a+b three layers › Bacillus chorismate mutase-like › Tubulin C-terminal domain-like › Tubulin C-terminal domain-like › TubZ_C 0.50 41.0 3.45e-01 90.4% 72.9%
1030983 2485.1.1.9 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › 2Fe-2S_thioredx 0.50 34.0 3.35e-01 87.2% 62.3%