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MT811961.1__QNI20975.1__X__00029

Bact-Vir

MT811961.1__QNI20975.1__X__00029

Identity

Accession:
MT811961 ↗
Kingdom:
phage

Quality

79.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_vB_pir03

TaxID: 2762667

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-105
PDB
Domain cluster: rep: OP056089.1__UYD72102.1__X__00002__D5-102
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13392.13 best HNH_3 38.3 1.10e-09 47.1% 95.7%
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u3eM01 3.90.75.20 Alpha Beta › Alpha-Beta Complex › Homing Intron 3 (I-Ppo) Encoded Endonuclease; Chain A › 0.90 85.0 8.38e-01 100.0% 94.3%
1a73A00 3.90.75.10 Alpha Beta › Alpha-Beta Complex › Homing Intron 3 (I-Ppo) Encoded Endonuclease; Chain A › Homing Intron 3 (I-ppo) Encoded Endonuclease; Chain A 0.65 58.0 4.94e-01 98.0% 87.0%
6guuA01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 28.0 3.60e-01 77.5% 83.3%
1b69A00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.55 26.0 3.06e-01 83.3% 60.9%
2w9jA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.54 29.0 3.32e-01 81.4% 70.4%
2gu3A01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 26.0 3.10e-01 88.2% 73.8%
1a15A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.50 25.0 2.96e-01 79.4% 67.2%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3586841 378.1.1.7 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › NUMOD4,HNH_3 0.88 84.0 8.02e-01 100.0% 98.3%
3695527 378.1.1.6 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › zf-His_Me_endon 0.60 54.0 5.13e-01 98.0% 95.0%
4215942 2.1.1.57 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N 0.59 28.0 3.03e-01 84.3% 50.6%
4105153 2.1.1.57 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N 0.58 28.0 3.05e-01 82.4% 51.8%
4194126 2.1.1.57 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N 0.58 27.0 3.06e-01 81.4% 55.0%
4285193 2.1.1.57 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N 0.56 28.0 3.07e-01 83.3% 56.2%
D2 high residues 114-183
PDB
D3 medium residues 185-250
PDB
Domain cluster: rep: OP310984.1__UXD83619.1__NP274_00212__00212__D3-72
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF07453.20 best NUMOD1 22.8 1.20e-04 54.5% 78.4%
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u3eM02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 68.0 6.73e-01 92.4% 88.2%
1w8kA02 3.50.4.10 Alpha Beta › 3-Layer(bba) Sandwich › Hepatocyte Growth Factor › Hepatocyte Growth Factor 0.66 45.0 3.82e-01 100.0% 42.7%
2zuoA09 2.30.30.570 Mainly Beta › Roll › SH3 type barrels. › 0.63 37.0 3.77e-01 90.9% 58.7%
5by5A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.62 38.0 3.17e-01 86.4% 33.9%
2wcyA02 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.59 35.0 3.34e-01 86.4% 47.5%
1ktbA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.59 38.0 3.43e-01 84.8% 47.3%
2bbhA01 3.30.460.20 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like 0.58 46.0 3.64e-01 90.9% 80.8%
1wi0A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.56 47.0 4.04e-01 97.0% 82.3%
4pofA03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.56 40.0 4.48e-01 86.4% 98.0%
7neaA01 3.30.470.10 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain 0.56 41.0 3.38e-01 78.8% 97.5%
1a0iA01 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.56 44.0 4.09e-01 93.9% 68.7%
3tcaA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.56 39.0 3.61e-01 75.8% 93.3%
6hmjA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 44.0 3.88e-01 90.9% 81.0%
1whwA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.54 42.0 3.78e-01 86.4% 89.4%
1e0gA00 3.10.350.10 Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain 0.54 32.0 3.52e-01 80.3% 79.2%
5ce8A01 3.30.470.10 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain 0.53 38.0 3.22e-01 78.8% 86.2%
1pgl100 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.53 45.0 3.37e-01 100.0% 76.2%
1nj4A01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.53 45.0 3.11e-01 98.5% 59.6%
1s6lA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 38.0 4.20e-01 81.8% 98.1%
4p4tA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 37.0 2.45e-01 77.3% 43.3%
2r7kA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.52 38.0 3.92e-01 86.4% 83.6%
1ln0A00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.52 40.0 3.67e-01 86.4% 67.4%
3zssA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.51 32.0 2.94e-01 89.4% 45.6%
1xp4A01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.51 43.0 2.94e-01 98.5% 63.2%
4ekuA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.51 40.0 3.36e-01 87.9% 57.3%
4iajA00 3.30.1490.390 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 0.50 39.0 3.80e-01 93.9% 75.0%
ECOD (37)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2876 101.1.14.2 ↗ alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › I-HmuI_NUMOD-like 0.80 68.0 6.69e-01 92.4% 87.0%
4384880 101.1.14.3 ↗ alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1 0.78 64.0 5.89e-01 89.4% 70.6%
4414927 101.1.14.3 ↗ alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1 0.72 61.0 6.09e-01 93.9% 92.8%
3997244 390.1.1.0 ↗ few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like 0.71 38.0 4.45e-01 83.3% 75.6%
3954522 3108.1.1.0 ↗ a+b two layers › Uncharacterized protein Atu1219 › Uncharacterized protein Atu1219 › Uncharacterized protein Atu1219 0.66 51.0 5.04e-01 84.8% 100.0%
3269943 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.63 39.0 3.42e-01 83.3% 43.2%
4665551 375.1.1.128 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_SprT 0.63 40.0 4.69e-01 86.4% 95.6%
3763238 12.1.1.32 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Melibiase_2_C 0.63 41.0 3.49e-01 86.4% 41.9%
3365600 12.1.1.63 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Raffinose_syn 0.62 41.0 3.24e-01 89.4% 33.3%
3835483 2002.1.1.219 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Raffinose_syn 0.62 40.0 3.23e-01 87.9% 35.2%
4980022 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.60 42.0 4.77e-01 95.5% 98.0%
5059022 11.1.4.23 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › CarboxypepD_reg 0.60 44.0 3.96e-01 95.5% 56.7%
5023733 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.59 40.0 2.67e-01 93.9% 17.7%
3490660 221.1.1.76 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 0.59 43.0 3.77e-01 81.8% 79.8%
3400352 379.1.1.0 ↗ few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.59 40.0 4.33e-01 93.9% 87.0%
3357419 12.1.1.35 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Melibiase_C 0.59 35.0 3.00e-01 87.9% 37.0%
3406258 221.1.1.76 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 0.58 42.0 3.85e-01 77.3% 93.3%
4330559 301.9.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › HypA Ni-binding domain › HypA Ni-binding domain › HypA 0.58 37.0 3.05e-01 90.9% 37.4%
3539015 4357.1.1.5 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE_4 0.58 44.0 3.65e-01 84.8% 55.6%
5051417 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.57 38.0 4.24e-01 89.4% 92.0%
3829832 243.1.1.2 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 0.56 43.0 3.74e-01 86.4% 72.7%
5022231 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 44.0 3.64e-01 98.5% 45.6%
3630093 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.56 44.0 4.24e-01 86.4% 80.0%
4990489 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 40.0 4.43e-01 83.3% 100.0%
4028677 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 43.0 3.74e-01 84.8% 74.3%
5051919 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.54 43.0 4.02e-01 90.9% 75.3%
4945301 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 38.0 3.07e-01 77.3% 92.7%
5003106 101.1.2.892 ↗ alpha arrays › HTH › HTH › winged helix domain › ArsR 0.54 37.0 3.90e-01 77.3% 81.7%
5028227 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.53 42.0 3.85e-01 84.8% 65.9%
77927 821.1.1.1 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.52 41.0 3.71e-01 87.9% 67.0%
4938876 593.1.1.1 ↗ alpha bundles › GroEL equatorial domain-like › GroEL equatorial domain-like › GroEL equatorial domain-like › Cpn60_TCP1 0.52 43.0 2.86e-01 93.9% 63.2%
2031885 11.1.1.335 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › GlgB_N 0.52 38.0 3.26e-01 93.9% 47.3%
3998594 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.52 36.0 3.49e-01 87.9% 65.3%
3964617 7523.1.1.15 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › LysR_substrate 0.51 42.0 3.11e-01 100.0% 50.9%
3621302 4020.1.1.0 ↗ a+b two layers › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes 0.51 41.0 3.10e-01 92.4% 90.6%
3881127 10.12.1.9 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › JmjC 0.50 41.0 2.67e-01 98.5% 41.8%
3320938 4020.1.1.1 ↗ a+b two layers › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › Aminotran_4 0.50 39.0 3.08e-01 90.9% 90.9%
D4 medium residues 251-317
PDB
Domain cluster: rep: BML_coassembly_scaffold_37_prodigal-single.1__X__X__00338__D232-284
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u3eM02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 59.0 5.89e-01 83.6% 80.9%
4gi3C00 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.68 44.0 4.72e-01 91.0% 77.2%
3bcwA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.65 37.0 3.17e-01 85.1% 35.6%
2i45D00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.65 36.0 3.20e-01 85.1% 37.4%
2pwyA01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.65 47.0 5.07e-01 77.6% 98.2%
1i9gA01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.65 50.0 5.13e-01 82.1% 92.2%
3p42A03 3.10.560.10 Alpha Beta › Roll › Outer membrane lipoprotein wza fold like › Outer membrane lipoprotein wza domain like 0.65 35.0 3.45e-01 79.1% 48.6%
1o54A01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.65 49.0 4.86e-01 82.1% 81.9%
4gr5C01 3.90.820.10 Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id 0.64 38.0 3.87e-01 94.0% 60.9%
5ja1B00 3.90.820.10 Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id 0.62 36.0 3.68e-01 92.5% 57.6%
2l6oA01 2.40.10.320 Mainly Beta › Beta Barrel › Thrombin, subunit H › Uncharacterised protein PF13642 yp_926445, N-terminal domain 0.61 38.0 3.73e-01 79.1% 58.3%
3oyyA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 36.0 3.64e-01 73.1% 58.5%
1yudA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.60 40.0 2.96e-01 83.6% 29.7%
2jz6A01 2.30.170.40 Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L28/L24 0.60 36.0 4.03e-01 94.0% 80.0%
2yn5A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 37.0 3.49e-01 82.1% 53.2%
3thpA02 2.60.120.1520 Mainly Beta › Sandwich › Jelly Rolls › 0.59 37.0 2.83e-01 83.6% 27.6%
1a0iA01 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.58 38.0 3.58e-01 80.6% 54.2%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 43.0 3.61e-01 82.1% 61.3%
4h8wC02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 36.0 3.46e-01 82.1% 57.3%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.56 39.0 3.98e-01 83.6% 74.2%
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.55 40.0 4.43e-01 80.6% 94.5%
3p9dE01 1.10.560.10 Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain 0.54 44.0 3.05e-01 95.5% 64.9%
6ks6G01 1.10.560.10 Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain 0.54 43.0 3.02e-01 95.5% 73.1%
2f4nB02 2.40.30.90 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacterial fluorinating enzyme like 0.53 41.0 3.65e-01 82.1% 70.2%
1qr4A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 36.0 3.31e-01 80.6% 54.0%
1wgyA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.53 35.0 3.47e-01 70.1% 96.1%
6ks6Z01 1.10.560.10 Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain 0.53 44.0 3.02e-01 97.0% 64.7%
3f95B00 2.60.120.430 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin 0.52 39.0 2.96e-01 82.1% 34.7%
3glkA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.52 33.0 3.45e-01 79.1% 71.2%
1wi0A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.52 41.0 3.59e-01 92.5% 92.9%
2d93A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 42.0 3.30e-01 88.1% 62.7%
4iajA00 3.30.1490.390 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 0.51 34.0 3.27e-01 80.6% 59.2%
ECOD (36)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2876 101.1.14.2 ↗ alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › I-HmuI_NUMOD-like 0.76 59.0 5.86e-01 83.6% 79.7%
3333626 822.1.1.0 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain 0.74 44.0 4.65e-01 82.1% 66.7%
3400250 379.1.1.3 ↗ few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_2 0.72 45.0 5.14e-01 86.6% 86.0%
3193939 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.67 37.0 2.80e-01 85.1% 22.5%
3805835 4121.1.1.2 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › MRS2-like 0.65 47.0 3.23e-01 80.6% 27.2%
1030895 284.1.1.0 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like 0.65 49.0 4.96e-01 82.1% 86.8%
4982454 284.1.1.0 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like 0.61 46.0 4.83e-01 80.6% 91.7%
3214145 10.4.1.9 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB_2 0.60 36.0 3.06e-01 82.1% 37.3%
4932732 275.1.1.0 ↗ a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase 0.59 35.0 3.85e-01 80.6% 72.7%
4566976 375.14.2.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS2) 0.59 32.0 3.88e-01 77.6% 87.5%
4961835 377.9.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like 0.59 44.0 4.34e-01 97.0% 74.0%
5006287 11.1.1.15 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PKD 0.57 31.0 3.02e-01 80.6% 48.0%
3617486 593.1.1.1 ↗ alpha bundles › GroEL equatorial domain-like › GroEL equatorial domain-like › GroEL equatorial domain-like › Cpn60_TCP1 0.56 46.0 3.28e-01 94.0% 73.4%
3594785 593.1.1.0 ↗ alpha bundles › GroEL equatorial domain-like › GroEL equatorial domain-like › GroEL equatorial domain-like 0.56 45.0 3.18e-01 94.0% 65.7%
3595399 593.1.1.0 ↗ alpha bundles › GroEL equatorial domain-like › GroEL equatorial domain-like › GroEL equatorial domain-like 0.56 45.0 3.12e-01 94.0% 64.2%
4886716 2498.5.1.1 ↗ mixed a+b and a/b › Zincin-like › GroEL-intermediate domain like › GroEL-intermediate domain like › Cpn60_TCP1 0.55 44.0 3.09e-01 95.5% 72.7%
3260912 593.1.1.1 ↗ alpha bundles › GroEL equatorial domain-like › GroEL equatorial domain-like › GroEL equatorial domain-like › Cpn60_TCP1 0.53 43.0 3.03e-01 95.5% 75.2%
3798429 10.7.1.0 ↗ beta sandwiches › jelly-roll › Hypothetical protein TM1070 › Hypothetical protein TM1070 0.53 35.0 3.15e-01 82.1% 48.4%
3881492 109.4.1.411 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TTC3_DZIP3_dom 0.53 45.0 2.97e-01 97.0% 24.5%
5004344 593.1.1.1 ↗ alpha bundles › GroEL equatorial domain-like › GroEL equatorial domain-like › GroEL equatorial domain-like › Cpn60_TCP1 0.53 42.0 3.00e-01 94.0% 68.3%
3711220 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.53 39.0 3.98e-01 79.1% 98.5%
4934465 593.1.1.1 ↗ alpha bundles › GroEL equatorial domain-like › GroEL equatorial domain-like › GroEL equatorial domain-like › Cpn60_TCP1 0.53 43.0 2.99e-01 95.5% 72.7%
3992154 1.1.2.7 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N 0.52 39.0 4.13e-01 82.1% 88.3%
3618723 221.1.1.4 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 0.52 37.0 3.50e-01 74.6% 100.0%
4683204 101.35.1.5 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH1 0.52 32.0 2.89e-01 71.6% 39.0%
5013637 221.1.3.1 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Sulfite oxidase, middle catalytic domain › Oxidored_molyb 0.52 37.0 2.85e-01 76.1% 92.7%
5041180 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.52 35.0 2.78e-01 82.1% 35.4%
1392732 221.1.1.4 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 0.52 35.0 3.01e-01 71.6% 80.9%
3229647 10.4.1.9 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB_2 0.52 34.0 3.15e-01 85.1% 52.9%
5064037 5103.1.1.0 ↗ a/b three-layered sandwiches › Insert domain in hypothetical protein PF0380 › Insert domain in hypothetical protein PF0380 › Insert domain in hypothetical protein PF0380 0.52 43.0 3.75e-01 100.0% 86.1%
3253088 593.1.1.1 ↗ alpha bundles › GroEL equatorial domain-like › GroEL equatorial domain-like › GroEL equatorial domain-like › Cpn60_TCP1 0.51 41.0 2.79e-01 94.0% 70.1%
4363284 148.1.3.203 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PF28760 0.51 42.0 3.33e-01 91.0% 97.9%
3783286 376.1.1.3 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › ZZ 0.51 37.0 3.85e-01 97.0% 86.7%
4974457 210.1.3.0 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases 0.51 43.0 3.10e-01 100.0% 84.1%
3903107 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.51 34.0 3.05e-01 82.1% 49.5%
4589356 210.1.3.0 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases 0.50 43.0 3.25e-01 97.0% 79.4%