←Back to structures

MT811961.1__QNI21110.1__X__00164

Bact-Vir

MT811961.1__QNI21110.1__X__00164

Identity

Accession:
MT811961 ↗
Kingdom:
phage

Quality

79.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_vB_pir03

TaxID: 2762667

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 35-143
PDB
Domain cluster: rep: NC_027299.1__YP_009146220.1__SUFP_046__00046__D4-101
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF10544.16 best T5orf172 20.2 9.40e-04 88.1% 86.7%
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ebmA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.67 44.0 4.18e-01 99.1% 56.2%
1ln0A00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.66 46.0 4.92e-01 71.6% 97.8%
7npaA02 3.30.70.3340 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 41.0 4.52e-01 87.2% 84.7%
1mwyA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 36.0 4.20e-01 81.7% 86.3%
1gjsA00 1.10.8.40 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Albumin-binding domain 0.60 31.0 3.86e-01 90.8% 81.5%
1s12A00 3.30.70.1490 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp 0.59 41.0 4.41e-01 94.5% 85.1%
1cc8A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 35.0 4.11e-01 84.4% 88.9%
2qv6B02 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.57 40.0 3.89e-01 85.3% 64.8%
2lsoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 35.0 3.94e-01 80.7% 86.7%
1mw7A02 3.30.70.980 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain 0.53 39.0 4.29e-01 75.2% 98.9%
1q8bA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 37.0 4.00e-01 85.3% 86.0%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.52 43.0 3.72e-01 90.8% 56.9%
1jg5A00 3.30.1410.10 Alpha Beta › 2-Layer Sandwich › Gtp Cyclohydrolase I Feedback Regulatory Protein; Chain: K › GTP cyclohydrolase I feedback regulatory protein GFRP 0.52 37.0 4.20e-01 96.3% 100.0%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4016088 821.1.1.3 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › T5orf172 0.81 71.0 7.28e-01 93.6% 99.0%
3946107 821.1.1.3 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › T5orf172 0.80 65.0 6.91e-01 89.9% 97.9%
3597677 821.1.1.0 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease 0.77 66.0 6.73e-01 96.3% 94.3%
3735748 821.1.1.3 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › T5orf172 0.77 71.0 6.07e-01 99.1% 70.0%
3740549 821.1.1.10 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › MUG113 0.77 68.0 6.12e-01 96.3% 84.5%
3698242 821.1.1.10 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › MUG113 0.76 66.0 6.32e-01 96.3% 81.3%
3689357 821.1.1.3 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › T5orf172 0.76 70.0 6.02e-01 100.0% 70.9%
165197 216.1.1.4 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.67 44.0 4.18e-01 99.1% 56.2%
3679340 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.67 42.0 4.22e-01 98.2% 62.7%
3738005 3868.1.1.1 ↗ a+b three layers › Mitochondrial homologous recombination protein 1 › Mitochondrial homologous recombination protein 1 › Mitochondrial homologous recombination protein 1 › Mhr1 0.65 59.0 5.20e-01 97.2% 80.0%
5033197 306.6.1.0 ↗ a+b two layers › Glucose permease domain IIB-like › PH0987 N-terminal domain-like › PH0987 N-terminal domain-like 0.64 38.0 4.78e-01 85.3% 100.0%
4961443 7539.1.1.1 ↗ a/b three-layered sandwiches › Creatininase › Creatininase › Creatininase › Creatininase 0.59 45.0 3.51e-01 80.7% 89.6%
5579 306.8.1.1 ↗ a+b two layers › Glucose permease domain IIB-like › TM1457-like › TM1457-like › Peptidase_Prp 0.59 41.0 4.41e-01 94.5% 85.1%
5143 304.3.1.1 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA 0.59 35.0 4.11e-01 84.4% 88.9%
4682624 4943.1.1.1 ↗ a+b two layers › YcgL/NE1680-like › YcgL/NE1680-like › YcgL/NE1680-like › YcgL 0.58 40.0 4.42e-01 76.1% 89.4%
3477015 103.1.1.3 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › CRAL_TRIO_N 0.57 34.0 3.83e-01 89.0% 78.8%
3402152 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.57 39.0 3.83e-01 94.5% 64.2%
3397043 306.5.1.0 ↗ a+b two layers › Glucose permease domain IIB-like › GTP cyclohydrolase I feedback regulatory protein, GFRP › GTP cyclohydrolase I feedback regulatory protein, GFRP 0.56 39.0 4.45e-01 96.3% 98.8%
5080080 2003.1.5.19 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › TRM 0.53 38.0 2.60e-01 74.3% 36.6%
3575366 221.1.1.76 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 0.52 32.0 3.48e-01 94.5% 72.6%
4990530 3016.1.1.0 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.51 41.0 4.36e-01 96.3% 98.9%