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MT811961.1__QNI21234.1__X__00288

Bact-Vir

MT811961.1__QNI21234.1__X__00288

Identity

Accession:
MT811961 ↗
Kingdom:
phage

Quality

50.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_vB_pir03

TaxID: 2762667

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-13_49-68_86-175
PDB
D2 medium residues 280-396
PDB
D3 medium residues 545-708
PDB
D4 medium residues 716-880
PDB
Domain cluster: rep: IMGVR_UViG_3300024259_002254-3300024259-Ga0233437_10093093__D364-478
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF03382.21 best DUF285 81.0 8.20e-23 66.1% 84.2%
PF03382.21 DUF285 23.8 4.50e-05 30.9% 32.5%
D5 medium residues 881-970
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03382.21 best DUF285 37.5 2.60e-09 98.9% 71.7%
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5jlvC00 2.160.20.80 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › E3 ubiquitin-protein ligase SopA 0.73 59.0 5.76e-01 100.0% 80.4%
4oj5C04 2.160.20.130 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.65 58.0 4.60e-01 100.0% 63.8%
4v02C00 2.160.20.70 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.62 49.0 4.51e-01 98.9% 64.8%
1gvhA03 3.40.50.80 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.60 42.0 3.63e-01 73.3% 51.4%
2rc5A02 3.40.50.80 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.57 41.0 3.38e-01 74.4% 47.8%
4nzrM02 2.160.20.180 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.56 49.0 3.98e-01 100.0% 49.5%
6mv2A03 3.40.50.80 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.51 35.0 3.15e-01 72.2% 54.1%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5041137 207.14.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A 0.82 59.0 6.63e-01 98.9% 95.7%
4024460 208.7.1.0 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Grass antifreeze protein › Grass antifreeze protein 0.75 49.0 4.33e-01 100.0% 48.0%
3997590 208.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.74 48.0 5.69e-01 91.1% 100.0%
4929387 208.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.74 52.0 5.80e-01 96.7% 95.7%
3963707 207.14.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A 0.73 49.0 5.13e-01 98.9% 76.2%
4952811 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.70 62.0 4.37e-01 97.8% 45.8%
3769689 207.14.1.3 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A › DUF5585 0.70 43.0 4.64e-01 93.3% 73.3%
3246091 389.1.1.157 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › Epiglycanin_TR 0.69 62.0 4.93e-01 100.0% 94.4%
3187916 207.2.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.68 56.0 4.29e-01 100.0% 38.2%
3629898 207.6.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C 0.65 49.0 5.33e-01 94.4% 100.0%
3271618 207.9.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats 0.65 50.0 5.14e-01 98.9% 89.4%
4020264 208.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.64 55.0 5.19e-01 96.7% 79.0%
3175357 207.6.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C 0.62 54.0 4.69e-01 98.9% 78.6%
4964741 207.14.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A › Bactofilin 0.61 54.0 5.49e-01 100.0% 97.8%
2516583 207.14.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A › Bactofilin 0.61 50.0 5.05e-01 98.9% 90.0%
4025775 208.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.60 53.0 4.85e-01 98.9% 74.8%
3870521 207.14.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A 0.51 38.0 4.07e-01 95.6% 97.3%
D6 medium residues 1085-1136
PDB
D7 medium residues 1137-1227
PDB