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MT818426.1__QOC59327.1__SEA_LIFES_1__00001

Bact-Vir

MT818426.1__QOC59327.1__SEA_LIFES_1__00001

Identity

Accession:
MT818426 ↗
Kingdom:
phage

Quality

79.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-59
PDB
Domain cluster: representative
CATH (54)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2k7iA01 3.30.160.160 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › YegP-like 0.69 47.0 5.00e-01 70.2% 89.6%
1eg3A01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.69 38.0 4.54e-01 78.9% 81.6%
5hy7B02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.65 54.0 3.41e-01 93.0% 40.4%
2k49A00 2.30.29.80 Mainly Beta › Roll › PH-domain like › 0.65 47.0 3.71e-01 77.2% 41.5%
4pswB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.64 52.0 3.14e-01 89.5% 31.4%
1ospO02 3.90.930.1 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.64 51.0 3.90e-01 93.0% 42.5%
2xu7A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.64 51.0 3.13e-01 89.5% 32.8%
3da7E00 3.40.20.20 Alpha Beta › 3-Layer(aba) Sandwich › Severin › 0.63 45.0 3.79e-01 82.5% 42.7%
4immA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.63 53.0 3.26e-01 93.0% 31.1%
2vseA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.62 46.0 3.63e-01 86.0% 70.4%
2ysiA01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.62 35.0 4.08e-01 80.7% 93.9%
2ymsC00 2.40.10.480 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.62 52.0 4.73e-01 91.2% 84.0%
2d9vA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 48.0 3.94e-01 86.0% 78.7%
7ctpA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 49.0 3.83e-01 86.0% 80.0%
8hpoK01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 51.0 3.08e-01 93.0% 34.2%
3i2nA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 49.0 3.04e-01 89.5% 37.7%
1shyB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 49.0 2.91e-01 89.5% 37.6%
1kb0A01 2.140.10.10 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Quinoprotein alcohol dehydrogenase-like superfamily 0.60 52.0 2.97e-01 96.5% 32.3%
2ymsB00 2.40.10.480 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.60 50.0 4.56e-01 91.2% 87.8%
2ymsA00 2.40.128.630 Mainly Beta › Beta Barrel › Lipocalin › 0.59 50.0 3.87e-01 93.0% 86.3%
4gzvA00 2.40.128.490 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF14869 family, DUF4488 0.59 49.0 3.74e-01 93.0% 79.1%
2w9jA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.59 40.0 3.80e-01 71.9% 62.0%
4a18O00 3.30.390.110 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.59 45.0 3.61e-01 91.2% 55.2%
8ciwA02 2.40.110.10 Mainly Beta › Beta Barrel › Butyryl-CoA Dehydrogenase, subunit A; domain 2 › Butyryl-CoA Dehydrogenase, subunit A, domain 2 0.59 47.0 3.70e-01 93.0% 98.5%
4o9dA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 51.0 3.08e-01 98.2% 86.4%
4v1al00 3.30.780.10 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain 0.58 43.0 3.37e-01 82.5% 69.9%
1iucA00 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.58 49.0 3.07e-01 96.5% 45.5%
7uhyA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 47.0 2.97e-01 91.2% 44.5%
2pptA02 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.57 49.0 3.99e-01 94.7% 100.0%
1kfiA04 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.57 41.0 3.19e-01 75.4% 41.6%
4g56D00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 45.0 2.88e-01 89.5% 37.6%
1h10A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 44.0 3.56e-01 86.0% 69.2%
1dkiC01 3.90.70.50 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Streptopain (SpeB) 0.57 46.0 3.30e-01 93.0% 60.8%
1xkiA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 47.0 3.72e-01 96.5% 69.5%
2i2lA01 2.10.70.50 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.57 45.0 4.75e-01 86.0% 96.2%
2cswA01 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.56 47.0 3.78e-01 100.0% 74.6%
1flgA00 2.140.10.10 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Quinoprotein alcohol dehydrogenase-like superfamily 0.56 49.0 2.82e-01 100.0% 97.6%
6u5uG07 3.30.1120.100 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.55 43.0 3.33e-01 87.7% 85.6%
2n6eA00 3.40.1530.20 Alpha Beta › 3-Layer(aba) Sandwich › hypothetical protein tt1805 › Protein of unknown function (DUF1491) 0.55 43.0 3.67e-01 96.5% 69.1%
4qxaB00 2.30.29.230 Mainly Beta › Roll › PH-domain like › 0.54 44.0 3.32e-01 91.2% 63.3%
5j7dC00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.53 44.0 3.62e-01 93.0% 100.0%
2ezvA01 3.40.600.40 Alpha Beta › 3-Layer(aba) Sandwich › ECO RV Endonuclease; Chain A › Type II restriction enzyme SfiI, multifunctional domain 0.53 38.0 2.69e-01 78.9% 38.6%
3t0qA00 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.52 43.0 2.80e-01 98.2% 94.4%
5m1pB00 3.30.420.240 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.52 42.0 2.97e-01 93.0% 27.5%
2wm1A00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.52 42.0 2.70e-01 98.2% 20.2%
3aihB01 2.70.130.10 Mainly Beta › Distorted Sandwich › Cation-dependent Mannose-6-phosphate Receptor; Chain A › Mannose-6-phosphate receptor binding domain 0.51 41.0 3.51e-01 98.2% 83.2%
2gzaA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.51 35.0 2.86e-01 75.4% 38.0%
2fhxA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.51 43.0 2.87e-01 98.2% 93.1%
3tcoA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.51 41.0 3.53e-01 100.0% 93.4%
7byjA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 39.0 3.46e-01 91.2% 76.8%
2mdiA00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.51 40.0 4.07e-01 91.2% 87.5%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.51 38.0 3.91e-01 87.7% 90.4%
2pt7C01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.50 36.0 2.94e-01 75.4% 40.6%
3hz4A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.50 39.0 3.32e-01 98.2% 86.7%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5075465 4325.1.1.0 mixed a+b and a/b › YegP-like › YegP-like › YegP-like 0.69 47.0 4.63e-01 70.2% 71.7%
4188237 4325.1.1.1 mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508 0.68 47.0 4.77e-01 71.9% 80.0%
3699899 214.1.1.6 a+b two layers › SH2 › SH2 › SH2 › SH2_2 0.67 58.0 4.64e-01 100.0% 55.0%
3490698 5.1.4.337 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, WD40_CDC20-Fz 0.67 55.0 3.29e-01 89.5% 29.4%
3742689 5.1.4.661 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR36-Utp21_1st 0.66 56.0 3.43e-01 91.2% 36.5%
3193043 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.66 55.0 3.17e-01 89.5% 24.1%
3316791 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.65 55.0 3.34e-01 93.0% 33.4%
3582807 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.65 53.0 3.14e-01 89.5% 29.5%
3688550 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.65 52.0 3.22e-01 89.5% 32.1%
3390571 109.54.1.0 alpha superhelices › Repetitive alpha hairpins › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 0.64 53.0 3.08e-01 89.5% 22.4%
3546354 5.1.4.164 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_VPS8 0.64 54.0 3.25e-01 94.7% 45.3%
3705932 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.64 52.0 3.15e-01 89.5% 35.2%
4943121 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.64 53.0 3.10e-01 89.5% 24.0%
4321106 5.1.4.307 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF29630 0.63 50.0 3.05e-01 87.7% 19.0%
3742540 5.1.5.88 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Nucleoporin_N 0.63 52.0 3.07e-01 91.2% 34.9%
4027844 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.62 50.0 3.05e-01 89.5% 19.2%
3675483 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.62 52.0 3.08e-01 91.2% 39.0%
160842 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.62 48.0 3.72e-01 86.0% 65.4%
3924545 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.62 52.0 4.20e-01 100.0% 61.7%
3280222 9.4.1.5 beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains › DUF7586 0.62 51.0 4.53e-01 94.7% 75.3%
3977938 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.62 50.0 4.69e-01 91.2% 78.6%
3270494 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.61 49.0 3.70e-01 86.0% 73.3%
3847020 5.1.5.75 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, ANAPC4_WD40 0.61 53.0 3.25e-01 96.5% 91.8%
3266201 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.61 53.0 3.31e-01 98.2% 96.3%
3665000 5.1.2.2 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › WD40 0.61 51.0 3.61e-01 93.0% 51.4%
3608470 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.61 50.0 3.11e-01 91.2% 73.0%
3775191 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.60 49.0 2.70e-01 89.5% 12.3%
3507883 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.60 48.0 3.88e-01 89.5% 70.4%
3992144 708.1.2.5 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › Mss4 0.60 44.0 3.59e-01 96.5% 41.3%
3749834 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.60 45.0 4.61e-01 100.0% 87.3%
3569670 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.60 50.0 3.05e-01 91.2% 33.2%
3692244 5.1.4.436 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › EMC1_C, PQQ_2, Beta-prop_EMC1_N 0.60 51.0 2.83e-01 100.0% 41.1%
3272228 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 51.0 3.23e-01 94.7% 39.3%
3998757 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 50.0 2.96e-01 93.0% 33.6%
3874056 64.1.1.1 beta meanders › WW domain-like › WW domain › WW domain › WW 0.59 45.0 4.63e-01 100.0% 89.1%
3448857 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.59 49.0 2.98e-01 91.2% 56.9%
3303185 5.3.1.2 beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › B_lectin 0.59 50.0 3.72e-01 98.2% 76.1%
3459987 5.3.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › S_locus_glycop 0.59 49.0 3.76e-01 100.0% 95.3%
3233435 7.1.1.0 beta barrels › PDZ domain › PDZ domain › PDZ domain 0.58 42.0 3.77e-01 78.9% 82.4%
3709149 73.1.1.0 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain 0.58 50.0 4.09e-01 98.2% 81.8%
3243842 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 39.0 3.17e-01 70.2% 79.1%
4558605 220.5.1.1 beta barrels › PH domain-like › NucS N-terminal domain › NucS N-terminal domain › NucS_N 0.57 44.0 3.48e-01 84.2% 85.0%
5016556 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 45.0 3.89e-01 87.7% 72.2%
5018514 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 44.0 3.42e-01 91.2% 68.9%
4535258 220.5.1.1 beta barrels › PH domain-like › NucS N-terminal domain › NucS N-terminal domain › NucS_N 0.55 43.0 3.55e-01 86.0% 81.8%
3235400 220.1.1.132 beta barrels › PH domain-like › PH domain-like › PH domain-like › KRIT1_FRMD8_FERM_C 0.55 44.0 3.84e-01 89.5% 75.3%
1697321 3098.1.1.1 a+b two layers › Uncharacterized protein ATC0905 › Uncharacterized protein ATC0905 › Uncharacterized protein ATC0905 › DUF1491 0.55 43.0 3.67e-01 96.5% 69.1%
3660055 5.3.1.0 beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II 0.54 45.0 3.47e-01 93.0% 97.7%
1878849 101.1.2.204 alpha arrays › HTH › HTH › winged helix domain › PaaA-like_N 0.54 42.0 3.89e-01 86.0% 94.7%
3699568 252.2.1.0 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.54 43.0 4.11e-01 93.0% 84.3%
5023640 292.2.1.0 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.54 43.0 3.96e-01 93.0% 83.5%
3587744 9.9.1.1 beta barrels › Lipocalins/Streptavidin › Hypothetical protein YwiB › Hypothetical protein YwiB › DUF1934 0.53 44.0 3.44e-01 98.2% 93.6%
5026377 375.1.1.9 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-C4_Topoisom 0.52 43.0 3.98e-01 98.2% 93.8%
4163835 11.1.5.56 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Zona_CL1 0.52 38.0 2.83e-01 78.9% 31.0%
3222570 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 41.0 3.38e-01 93.0% 77.4%
3261235 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.51 41.0 3.67e-01 93.0% 69.4%
3586566 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 37.0 3.75e-01 77.2% 85.5%
1203379 323.1.1.3 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.50 36.0 2.41e-01 73.7% 72.7%