←Back to structures
MT818426.1__QOC59439.1__SEA_LIFES_118__00117
Bact-VirMT818426.1__QOC59439.1__SEA_LIFES_118__00117
Identity
- Accession:
- MT818426 ↗
- Kingdom:
- phage
Quality
71.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-57
Domain cluster:
representative
CATH (43)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ctkA00 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.65 | 45.0 | 3.55e-01 | 72.5% | 68.3% |
| 6d6zA02 | 3.40.50.11440 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › LarA, N-terminal domain | 0.64 | 47.0 | 3.08e-01 | 80.4% | 47.6% |
| 4wu3A02 | 3.30.70.1690 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.64 | 45.0 | 3.95e-01 | 90.2% | 47.1% |
| 3jysA01 | 1.25.40.390 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.63 | 53.0 | 3.50e-01 | 96.1% | 22.3% |
| 4jbcA01 | 3.30.70.1690 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 43.0 | 3.66e-01 | 84.3% | 40.2% |
| 4esbA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 41.0 | 3.24e-01 | 70.6% | 74.8% |
| 1bm9A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 40.0 | 3.06e-01 | 70.6% | 75.0% |
| 2kgtA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.60 | 39.0 | 3.51e-01 | 76.5% | 44.4% |
| 3m70A01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.60 | 51.0 | 4.13e-01 | 100.0% | 84.0% |
| 5dymA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 40.0 | 3.18e-01 | 86.3% | 35.4% |
| 2i71A01 | 3.40.50.10640 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SSO1389-like | 0.60 | 46.0 | 3.08e-01 | 88.2% | 26.0% |
| 3v4rA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.59 | 40.0 | 2.63e-01 | 72.5% | 54.5% |
| 2yjgA02 | 3.40.50.11440 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › LarA, N-terminal domain | 0.59 | 42.0 | 2.83e-01 | 80.4% | 48.1% |
| 1x5oA01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.58 | 37.0 | 3.28e-01 | 92.2% | 39.5% |
| 1e3mA01 | 3.40.1170.10 | Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › DNA repair protein MutS, domain I | 0.58 | 39.0 | 2.99e-01 | 70.6% | 66.7% |
| 2vzwB00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.58 | 40.0 | 2.87e-01 | 72.5% | 83.2% |
| 1nrkA02 | 3.30.70.1400 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains | 0.56 | 38.0 | 3.35e-01 | 74.5% | 89.7% |
| 6jx5A01 | 3.30.2160.10 | Alpha Beta › 2-Layer Sandwich › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain | 0.56 | 46.0 | 4.17e-01 | 100.0% | 90.7% |
| 4bqqB02 | 3.90.1750.20 | Alpha Beta › Alpha-Beta Complex › Hect, E3 ligase catalytic domain fold › Putative Large Serine Recombinase; Chain B, Domain 2 | 0.55 | 50.0 | 3.32e-01 | 100.0% | 26.8% |
| 2dhgA01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.55 | 32.0 | 2.84e-01 | 86.3% | 34.2% |
| 2qmlA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.55 | 42.0 | 2.93e-01 | 96.1% | 23.3% |
| 1xc3A01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.54 | 38.0 | 3.14e-01 | 76.5% | 84.5% |
| 4bc3A01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.54 | 44.0 | 2.73e-01 | 94.1% | 61.7% |
| 2p92A00 | 3.30.70.1490 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp | 0.54 | 43.0 | 3.54e-01 | 88.2% | 85.3% |
| 4r9iA01 | 3.30.497.10 | Alpha Beta › 2-Layer Sandwich › Antithrombin; Chain I, domain 2 › Antithrombin, subunit I, domain 2 | 0.53 | 43.0 | 2.72e-01 | 96.1% | 16.5% |
| 1iujA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 32.0 | 2.66e-01 | 100.0% | 28.4% |
| 2gupA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.53 | 38.0 | 3.18e-01 | 76.5% | 83.5% |
| 3h20A01 | 3.30.1490.240 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain | 0.53 | 41.0 | 3.90e-01 | 94.1% | 74.2% |
| 2l48A00 | 3.30.70.2030 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 40.0 | 3.42e-01 | 82.4% | 80.0% |
| 3k59A02 | 3.30.70.2250 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › B family DNA polymerase, N domain, alpha/beta motif | 0.53 | 36.0 | 3.29e-01 | 70.6% | 92.5% |
| 2anrA02 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.53 | 47.0 | 4.15e-01 | 100.0% | 76.0% |
| 3l9bA00 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.52 | 42.0 | 3.33e-01 | 98.0% | 100.0% |
| 3c19A02 | 3.10.20.300 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › mk0293 like domain | 0.52 | 45.0 | 3.94e-01 | 98.0% | 82.1% |
| 3a9gA00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.52 | 42.0 | 2.62e-01 | 94.1% | 86.1% |
| 4uy8X00 | 2.30.170.40 | Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L28/L24 | 0.52 | 33.0 | 2.96e-01 | 72.5% | 41.6% |
| 3ezjA02 | 3.30.1370.120 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.52 | 46.0 | 4.22e-01 | 100.0% | 79.4% |
| 3emiA00 | 3.90.1780.10 | Alpha Beta › Alpha-Beta Complex › Trimeric adhesin › Trimeric adhesin | 0.52 | 35.0 | 2.80e-01 | 72.5% | 33.6% |
| 2oarB00 | 1.10.1200.120 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Large-conductance mechanosensitive channel, MscL; domain 1 | 0.52 | 46.0 | 3.45e-01 | 100.0% | 42.4% |
| 6fezA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.51 | 36.0 | 3.16e-01 | 80.4% | 53.2% |
| 2e5vA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.51 | 42.0 | 2.70e-01 | 96.1% | 95.7% |
| 4ftfA00 | 3.30.300.250 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › | 0.51 | 42.0 | 3.34e-01 | 96.1% | 87.2% |
| 1q9jB02 | 3.30.559.30 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain | 0.51 | 40.0 | 2.83e-01 | 94.1% | 69.9% |
| 6abqB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 45.0 | 3.49e-01 | 98.0% | 86.8% |
ECOD (54)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3550392 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.74 | 44.0 | 2.99e-01 | 96.1% | 16.2% |
| 3175567 | 3541.1.1.1 ↗ | beta sandwiches › Atg29-Atg31 › Atg29-Atg31 › Atg29-Atg31 › ATG31 | 0.72 | 41.0 | 3.19e-01 | 100.0% | 26.9% |
| 3957585 | 2484.1.1.144 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DEDD_Tnp_IS110 | 0.68 | 48.0 | 3.98e-01 | 76.5% | 71.6% |
| 5070036 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.68 | 46.0 | 3.27e-01 | 70.6% | 56.7% |
| 4169299 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.67 | 45.0 | 3.47e-01 | 70.6% | 70.6% |
| 5076347 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.66 | 52.0 | 4.34e-01 | 88.2% | 50.6% |
| 3251796 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.64 | 40.0 | 2.87e-01 | 88.2% | 22.8% |
| 3466238 | 206.1.1.14 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › ABC1 | 0.62 | 44.0 | 2.58e-01 | 74.5% | 11.6% |
| 5077917 | 282.1.1.1 ↗ | a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS | 0.62 | 42.0 | 3.26e-01 | 72.5% | 31.7% |
| 3714994 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.61 | 51.0 | 3.53e-01 | 100.0% | 35.4% |
| 4995788 | 3218.1.1.0 ↗ | a+b duplicates or obligate multimers › small terminase oligomerization domain › small terminase oligomerization domain › small terminase oligomerization domain | 0.60 | 49.0 | 4.93e-01 | 98.0% | 98.1% |
| 3909292 | 220.1.1.37 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_13 | 0.60 | 43.0 | 3.01e-01 | 80.4% | 26.7% |
| 4995839 | 7601.1.1.1 ↗ | a/b three-layered sandwiches › Lactate racemase N-terminal domain › Lactate racemase N-terminal domain › Lactate racemase N-terminal domain › Lar_N | 0.59 | 44.0 | 2.85e-01 | 80.4% | 46.3% |
| 5070409 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.59 | 39.0 | 3.40e-01 | 82.4% | 40.9% |
| 3839655 | 235.1.1.5 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Transgly | 0.59 | 46.0 | 3.14e-01 | 100.0% | 41.6% |
| 5065533 | 7601.1.1.1 ↗ | a/b three-layered sandwiches › Lactate racemase N-terminal domain › Lactate racemase N-terminal domain › Lactate racemase N-terminal domain › Lar_N | 0.59 | 44.0 | 2.95e-01 | 88.2% | 19.6% |
| 3929069 | 5050.1.1.31 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › SLC52_ribofla_tr | 0.59 | 51.0 | 3.36e-01 | 100.0% | 85.5% |
| 3938950 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.58 | 44.0 | 3.17e-01 | 82.4% | 56.7% |
| 4945661 | 2003.1.5.66 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 | 0.58 | 46.0 | 2.95e-01 | 86.3% | 32.3% |
| 5008501 | 7601.1.1.1 ↗ | a/b three-layered sandwiches › Lactate racemase N-terminal domain › Lactate racemase N-terminal domain › Lactate racemase N-terminal domain › Lar_N | 0.58 | 43.0 | 2.89e-01 | 88.2% | 19.2% |
| 3669524 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.57 | 48.0 | 3.18e-01 | 92.2% | 24.8% |
| 4997301 | 7601.1.1.1 ↗ | a/b three-layered sandwiches › Lactate racemase N-terminal domain › Lactate racemase N-terminal domain › Lactate racemase N-terminal domain › Lar_N | 0.57 | 43.0 | 2.94e-01 | 88.2% | 20.9% |
| 5046296 | 7601.1.1.1 ↗ | a/b three-layered sandwiches › Lactate racemase N-terminal domain › Lactate racemase N-terminal domain › Lactate racemase N-terminal domain › Lar_N | 0.57 | 43.0 | 2.94e-01 | 88.2% | 20.9% |
| 5004772 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 39.0 | 3.23e-01 | 86.3% | 40.0% |
| 3505855 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.57 | 32.0 | 2.80e-01 | 82.4% | 36.3% |
| 3933927 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.57 | 50.0 | 3.03e-01 | 100.0% | 16.1% |
| 3511091 | 220.1.1.145 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_RASGAP | 0.56 | 40.0 | 3.83e-01 | 76.5% | 80.0% |
| 3799812 | 2485.1.1.71 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › SelP_N | 0.56 | 38.0 | 3.05e-01 | 70.6% | 89.5% |
| 3595126 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.56 | 35.0 | 2.89e-01 | 100.0% | 33.7% |
| 4946245 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.55 | 35.0 | 3.51e-01 | 100.0% | 60.0% |
| 3442291 | 2.9.1.1 ↗ | beta barrels › OB-fold › RNB domain-like › RNB domain-like › RNB | 0.55 | 45.0 | 2.65e-01 | 94.1% | 31.5% |
| 5074542 | 3326.1.1.1 ↗ | alpha arrays › DNA-binding domain in UvrA › DNA-binding domain in UvrA › DNA-binding domain in UvrA › UvrA_DNA-bind | 0.55 | 48.0 | 3.67e-01 | 100.0% | 90.0% |
| 4033796 | 2.9.1.1 ↗ | beta barrels › OB-fold › RNB domain-like › RNB domain-like › RNB | 0.55 | 44.0 | 2.65e-01 | 94.1% | 33.8% |
| 165416 | 213.1.1.28 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_8 | 0.55 | 42.0 | 2.93e-01 | 96.1% | 23.3% |
| 3921728 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.54 | 41.0 | 3.18e-01 | 100.0% | 36.5% |
| 86702 | 4325.1.1.1 ↗ | mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508 | 0.54 | 35.0 | 3.54e-01 | 96.1% | 65.4% |
| 3903049 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.54 | 39.0 | 3.10e-01 | 80.4% | 59.2% |
| 3705453 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.54 | 38.0 | 2.48e-01 | 76.5% | 70.0% |
| 4998735 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 37.0 | 2.72e-01 | 96.1% | 27.4% |
| 5077356 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 39.0 | 3.02e-01 | 88.2% | 32.0% |
| 3646297 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.54 | 45.0 | 3.01e-01 | 96.1% | 24.7% |
| 5021584 | 2004.1.1.220 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SWI2_SNF2 | 0.53 | 41.0 | 2.68e-01 | 86.3% | 46.4% |
| 4162926 | 241.1.1.3 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › CesT | 0.53 | 43.0 | 3.14e-01 | 86.3% | 86.2% |
| 4193894 | 2.9.1.1 ↗ | beta barrels › OB-fold › RNB domain-like › RNB domain-like › RNB | 0.53 | 44.0 | 2.69e-01 | 94.1% | 33.8% |
| 68010 | 306.8.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › TM1457-like › TM1457-like › Peptidase_Prp | 0.53 | 42.0 | 3.47e-01 | 88.2% | 84.5% |
| 4141444 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.53 | 46.0 | 3.01e-01 | 100.0% | 80.0% |
| 3924910 | 633.21.1.0 ↗ | alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 | 0.52 | 46.0 | 3.19e-01 | 100.0% | 43.6% |
| 4963170 | 304.5.1.0 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like | 0.52 | 35.0 | 2.99e-01 | 70.6% | 70.0% |
| 3511414 | 2.9.1.1 ↗ | beta barrels › OB-fold › RNB domain-like › RNB domain-like › RNB | 0.52 | 43.0 | 2.56e-01 | 94.1% | 32.1% |
| 3253322 | 2.9.1.1 ↗ | beta barrels › OB-fold › RNB domain-like › RNB domain-like › RNB | 0.52 | 41.0 | 2.47e-01 | 94.1% | 30.4% |
| 4982133 | 304.5.1.7 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 | 0.52 | 36.0 | 3.19e-01 | 74.5% | 80.0% |
| 5066425 | 304.5.1.7 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 | 0.51 | 36.0 | 3.21e-01 | 76.5% | 81.2% |
| 3485716 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.50 | 44.0 | 2.98e-01 | 100.0% | 38.4% |
| 4996628 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.50 | 42.0 | 2.84e-01 | 98.0% | 32.1% |