←Back to structures

MT818426.1__QOC59440.1__SEA_LIFES_119__00118

Bact-Vir

MT818426.1__QOC59440.1__SEA_LIFES_119__00118

Identity

Accession:
MT818426 ↗
Kingdom:
phage

Quality

92.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Microbacterium_phage_Lifes

TaxID: 2772025

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-82
PDB
Domain cluster: rep: NC_042316.1__YP_009636386.1__FGG20_gp217__00215__D5-80
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2x8fA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.66 55.0 3.65e-01 92.2% 31.7%
5jozA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.64 53.0 3.55e-01 90.9% 31.1%
3kl7A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.63 42.0 3.11e-01 70.1% 97.7%
3r7wB02 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.63 42.0 3.68e-01 80.5% 45.8%
4r7rA00 3.30.1490.410 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Uncharacterised protein PF16224, DUF4883 0.62 42.0 3.63e-01 72.7% 44.3%
1cruA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.62 54.0 3.35e-01 97.4% 36.6%
3kstA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.61 50.0 3.43e-01 90.9% 30.2%
8f5pC01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 47.0 3.16e-01 84.4% 24.9%
2p18A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.60 47.0 3.21e-01 85.7% 87.3%
7c38B01 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.60 49.0 3.26e-01 90.9% 27.8%
1c9rA04 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.60 45.0 4.05e-01 83.1% 57.9%
2pm6D01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 51.0 3.47e-01 94.8% 27.5%
4k3yC00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.59 51.0 3.29e-01 94.8% 22.5%
4agiA00 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.58 48.0 3.27e-01 94.8% 29.6%
1wlgA02 2.60.98.20 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Flagellar hook protein FlgE 0.58 46.0 3.83e-01 88.3% 75.0%
3fm8D03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 44.0 3.90e-01 80.5% 72.2%
3iujA02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.57 48.0 3.20e-01 94.8% 26.7%
2b4wA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.57 49.0 3.33e-01 96.1% 30.9%
3ei3B02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 48.0 3.19e-01 93.5% 26.9%
4wjsA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 47.0 3.02e-01 94.8% 18.4%
1mmuA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.57 42.0 2.79e-01 100.0% 18.3%
3aihB01 2.70.130.10 Mainly Beta › Distorted Sandwich › Cation-dependent Mannose-6-phosphate Receptor; Chain A › Mannose-6-phosphate receptor binding domain 0.57 44.0 4.00e-01 85.7% 90.7%
3zfnA02 2.30.140.40 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Pestivirus Npro endopeptidase C53, interaction domain 0.56 31.0 3.55e-01 79.2% 71.9%
3kxyJ00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.56 48.0 4.13e-01 98.7% 78.3%
1mtpA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.56 32.0 3.02e-01 90.9% 48.4%
2dhkA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 43.0 4.00e-01 85.7% 74.0%
2p4oA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.55 44.0 3.12e-01 94.8% 28.4%
5xyig01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 46.0 3.13e-01 94.8% 24.7%
3imhA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.55 45.0 3.11e-01 98.7% 94.6%
3h8zA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 32.0 3.84e-01 87.0% 93.8%
2bhoA00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.54 49.0 4.33e-01 100.0% 79.1%
4gf3A00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.54 48.0 4.15e-01 100.0% 76.4%
2aq5A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 47.0 3.07e-01 98.7% 22.9%
7knlA01 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.51 41.0 3.67e-01 89.6% 84.2%
1ei5A02 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.50 41.0 4.10e-01 92.2% 85.4%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3372207 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.70 57.0 3.20e-01 87.0% 9.5%
3697648 5.1.4.267 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, PF28639 0.70 55.0 3.37e-01 85.7% 17.3%
3932433 5.1.4.267 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, PF28639 0.69 54.0 3.39e-01 84.4% 18.3%
3595721 5.1.4.169 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd 0.69 60.0 3.73e-01 96.1% 32.5%
3738031 5.1.4.271 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, PF30361 0.66 52.0 3.28e-01 84.4% 19.0%
3303191 5.1.5.85 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40_RFWD3 0.66 52.0 3.28e-01 85.7% 18.2%
3266581 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.66 54.0 3.33e-01 89.6% 32.7%
3742442 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.65 51.0 3.33e-01 85.7% 20.3%
3710053 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.65 51.0 3.22e-01 85.7% 19.0%
3921266 5.1.4.37 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nup160 0.64 56.0 3.38e-01 96.1% 18.8%
3374974 5.1.3.4 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › WD40 0.64 51.0 3.65e-01 85.7% 32.9%
3777739 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.64 51.0 3.22e-01 85.7% 19.8%
3538633 5.1.12.3 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › PERK and Ire1 luminal domains › WD40 0.64 51.0 3.26e-01 85.7% 21.1%
3431347 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.64 51.0 3.52e-01 85.7% 34.1%
3600026 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.63 50.0 3.22e-01 84.4% 22.4%
3448363 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.63 50.0 3.57e-01 85.7% 37.8%
3557192 5.1.4.48 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › BBS1 0.63 49.0 3.16e-01 84.4% 20.8%
3412753 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.63 54.0 3.43e-01 94.8% 22.6%
3523657 5.1.4.18 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › EPTP 0.63 53.0 3.33e-01 92.2% 21.3%
3497267 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.62 55.0 3.60e-01 100.0% 27.1%
3782489 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.62 50.0 3.09e-01 89.6% 18.2%
3710260 5.1.3.244 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BBS2_N, BBS2_Mid 0.62 54.0 3.50e-01 98.7% 25.1%
4355548 558.1.1.26 ↗ alpha duplicates or obligate multimers › Lis-homology dimerization domain › Lis-homology dimerization domain › Lis-homology dimerization domain › WD40 0.62 51.0 3.15e-01 89.6% 17.1%
3194892 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.62 54.0 3.20e-01 94.8% 15.3%
3960877 295.1.1.27 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PF25991 0.62 42.0 4.39e-01 83.1% 77.1%
3647399 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.61 51.0 3.16e-01 90.9% 15.8%
3502483 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.61 54.0 3.36e-01 100.0% 29.8%
3633309 5.1.4.169 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd 0.61 52.0 3.27e-01 94.8% 17.8%
3204828 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.61 55.0 3.17e-01 100.0% 11.7%
3337835 5.1.5.45 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PROPPIN 0.61 54.0 3.98e-01 100.0% 50.5%
3599654 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.61 51.0 2.86e-01 90.9% 9.4%
3740662 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.61 50.0 3.20e-01 92.2% 18.7%
3174935 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 47.0 3.04e-01 85.7% 21.0%
3615235 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 52.0 3.30e-01 94.8% 20.3%
3255680 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.60 51.0 3.29e-01 94.8% 23.7%
3224773 5.1.4.589 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DUF7911 0.60 46.0 3.11e-01 84.4% 28.0%
5061430 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.59 49.0 3.49e-01 90.9% 35.7%
3407569 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.59 51.0 3.35e-01 94.8% 22.9%
3577637 5.1.4.262 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_CAF1B_HIR1 0.59 51.0 3.15e-01 97.4% 18.1%
3517230 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 49.0 3.14e-01 93.5% 21.2%
3383121 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.59 50.0 3.32e-01 94.8% 26.0%
3308935 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.59 51.0 3.38e-01 100.0% 29.4%
3433328 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.59 49.0 3.17e-01 94.8% 22.4%
3611831 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 50.0 3.26e-01 96.1% 21.5%
3270288 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.58 45.0 4.09e-01 81.8% 75.0%
3592074 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 46.0 2.63e-01 94.8% 7.8%
3475704 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.57 49.0 3.25e-01 100.0% 24.5%
3259242 5.1.4.604 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_CAF1B_HIR1, Beta-prop_WDR5 0.57 47.0 3.11e-01 90.9% 22.3%
3271965 5.1.5.207 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_EIPR1 0.57 50.0 3.23e-01 98.7% 29.0%
3924073 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 45.0 4.12e-01 87.0% 69.5%
3255850 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.57 43.0 3.56e-01 81.8% 55.7%
3485597 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.56 46.0 3.05e-01 94.8% 23.0%
3242109 5.1.4.172 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_CAF1B_HIR1 0.56 47.0 2.78e-01 92.2% 31.5%
3436743 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.56 48.0 3.15e-01 94.8% 23.7%
3238369 12.1.1.88 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › DUF5386 0.55 34.0 3.92e-01 100.0% 88.7%
3400906 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.55 44.0 4.01e-01 87.0% 77.1%
3393541 10.1.1.63 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Methyltransf_FA 0.54 47.0 3.69e-01 98.7% 53.3%
5057301 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.53 41.0 2.99e-01 90.9% 27.5%
4055542 241.1.1.3 ↗ a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › CesT 0.53 46.0 3.92e-01 98.7% 71.5%
5012828 5.1.4.40 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_2 0.53 45.0 2.86e-01 94.8% 27.4%
3605262 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.51 41.0 3.64e-01 87.0% 92.7%