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MT855965.1QNL13351.1X__00013

Bact-Vir

MT855965.1__QNL13351.1__X__00013

Identity

Accession:: MT855965 ↗
Kingdom:: phage

Quality

76.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Microcystis_phage_vB_MaeS-yong1

TaxID: 2762278

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-68

PDB

Domain cluster: representative

CATH (27)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3kxtA00	2.30.30.610	Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7	0.70	55.0	5.57e-01	96.6%	89.3%
4redB01	3.30.200.20	Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1	0.64	44.0	4.00e-01	100.0%	51.2%
3f3zA01	3.30.200.20	Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1	0.64	43.0	3.94e-01	100.0%	51.2%
8eg0B01	2.130.10.10	Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase	0.61	40.0	2.52e-01	77.6%	11.4%
2j9uB00	2.30.30.380	Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24	0.61	45.0	4.86e-01	89.7%	97.9%
2fhdA01	2.30.30.140	Mainly Beta › Roll › SH3 type barrels. ›	0.60	44.0	4.34e-01	86.2%	75.8%
4iupA02	2.30.30.140	Mainly Beta › Roll › SH3 type barrels. ›	0.59	45.0	4.30e-01	89.7%	76.4%
1qypA00	2.20.25.10	Mainly Beta › Single Sheet › N-terminal domain of TfIIb ›	0.58	40.0	4.09e-01	91.4%	77.2%
1a15A00	2.40.50.40	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) ›	0.58	40.0	3.85e-01	87.9%	62.7%
2xzm901	6.20.50.180	Special › Other non-globular › N-terminal domain of TfIIb ›	0.57	32.0	3.07e-01	75.9%	43.1%
2lt1A00	2.40.10.170	Mainly Beta › Beta Barrel › Thrombin, subunit H ›	0.56	42.0	3.94e-01	89.7%	64.0%
2f5kA01	2.30.30.140	Mainly Beta › Roll › SH3 type barrels. ›	0.55	40.0	4.20e-01	86.2%	94.0%
7lxuE01	3.60.20.10	Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain	0.54	37.0	2.62e-01	74.1%	89.3%
1rjtA00	2.40.50.40	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) ›	0.54	39.0	3.73e-01	81.0%	65.8%
1whmA01	2.30.30.190	Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain	0.54	41.0	3.90e-01	86.2%	93.1%
6bm0A01	2.130.10.10	Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase	0.53	44.0	2.76e-01	98.3%	15.8%
2qa1A02	3.30.70.2450	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.53	37.0	3.45e-01	96.6%	57.0%
2nmlA00	3.30.2260.10	Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary	0.52	37.0	3.16e-01	74.1%	94.0%
2kqrA01	3.30.1910.20	Alpha Beta › 2-Layer Sandwich › so0334 like fold › asparaginyl-tRNA synthetase, N-terminal domain	0.52	37.0	3.50e-01	77.6%	83.8%
2cy5A00	2.30.29.30	Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	0.52	43.0	3.44e-01	98.3%	79.8%
2ky6A00	2.40.290.30	Mainly Beta › Beta Barrel › Ku70; Chain: A; Domain 2 › Mediator complex subunit 25, ACID domain	0.52	44.0	3.27e-01	98.3%	41.6%
2rajA02	3.30.1520.10	Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain	0.51	38.0	3.06e-01	82.8%	51.6%
4e1pA00	3.30.60.230	Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Lsr2, dimerisation domain	0.51	32.0	3.33e-01	100.0%	67.3%
3vpbE00	2.20.28.160	Mainly Beta › Single Sheet › Rubrerythrin, domain 2 ›	0.51	34.0	3.50e-01	87.9%	73.2%
1vw4M01	2.30.30.790	Mainly Beta › Roll › SH3 type barrels. ›	0.51	39.0	3.16e-01	91.4%	43.9%
4hcsA00	2.40.50.40	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) ›	0.50	34.0	3.33e-01	84.5%	62.7%
1kw3B02	3.10.180.10	Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1	0.50	38.0	2.92e-01	86.2%	42.2%

ECOD (40)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4028836	375.5.1.1 ↗	few secondary structure elements › Rubredoxin-like › NOB1 zinc finger-like › NOB1 zinc finger-like › NOB1_Zn_bind	0.77	45.0	4.33e-01	89.7%	52.3%
4962054	375.1.1.345 ↗	few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF7837	0.72	51.0	5.46e-01	79.3%	97.8%
4981041	375.1.1.299 ↗	few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › CPxCG_zf	0.62	46.0	4.77e-01	100.0%	98.0%
3581484	3767.1.1.2 ↗	a+b two layers › Giardia Dicer N-terminal domain › Giardia Dicer N-terminal domain › Giardia Dicer N-terminal domain › Dicer_platform	0.61	44.0	3.13e-01	77.6%	67.0%
4979219	375.1.1.0 ↗	few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related	0.61	39.0	4.48e-01	89.7%	97.5%
3500548	375.5.1.1 ↗	few secondary structure elements › Rubredoxin-like › NOB1 zinc finger-like › NOB1 zinc finger-like › NOB1_Zn_bind	0.60	43.0	4.33e-01	87.9%	73.3%
4991056	375.1.1.63 ↗	few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › LysW-like_globular	0.60	40.0	4.14e-01	93.1%	74.5%
3188296	375.1.1.132 ↗	few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › NOB1_Zn_bind	0.60	43.0	4.34e-01	87.9%	75.0%
3882130	221.4.1.1 ↗	a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX	0.59	48.0	3.42e-01	100.0%	75.0%
3927135	247.1.1.1 ↗	a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B	0.59	41.0	2.60e-01	74.1%	73.4%
4976092	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.59	44.0	3.90e-01	89.7%	53.3%
3780755	221.4.1.1 ↗	a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX	0.59	48.0	3.38e-01	98.3%	78.2%
3928506	376.1.1.20 ↗	few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX	0.58	43.0	3.87e-01	82.8%	55.3%
3478504	206.1.1.1 ↗	a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase	0.58	47.0	3.03e-01	98.3%	17.7%
5029687	375.1.1.0 ↗	few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related	0.56	38.0	4.14e-01	87.9%	88.9%
3664655	601.28.1.2 ↗	alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like › PHD_Oberon	0.56	48.0	3.63e-01	100.0%	80.0%
3438163	4135.1.1.1 ↗	beta duplicates or obligate multimers › MAL13P1.257-like › MAL13P1.257-like › MAL13P1.257-like › CXXC_Zn-b_euk	0.56	47.0	3.52e-01	100.0%	61.2%
3397132	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.56	43.0	4.44e-01	89.7%	92.7%
3451173	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.55	41.0	3.67e-01	91.4%	54.4%
4946781	375.1.1.0 ↗	few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related	0.54	40.0	4.51e-01	77.6%	100.0%
3257727	216.1.1.0 ↗	a+b two layers › UBC-like › UBC-like › UBC-like	0.54	36.0	2.84e-01	75.9%	29.2%
5048750	221.4.1.1 ↗	a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX	0.54	44.0	3.12e-01	98.3%	76.3%
3620947	4.8.1.0 ↗	beta barrels › SH3 › Chromo domain-like › Chromo domain-like	0.53	35.0	3.65e-01	70.7%	72.7%
3648747	376.1.3.62 ↗	few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD_Oberon	0.53	42.0	3.79e-01	86.2%	66.3%
5032461	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.53	42.0	4.06e-01	91.4%	78.5%
4033484	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.53	39.0	3.85e-01	91.4%	75.0%
5054994	375.1.1.0 ↗	few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related	0.53	37.0	3.87e-01	91.4%	93.8%
4034317	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.52	39.0	3.90e-01	91.4%	77.8%
4851967	4.1.1.32 ↗	beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID	0.52	41.0	4.05e-01	89.7%	85.5%
4947463	101.1.8.0 ↗	alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes	0.52	38.0	3.26e-01	96.6%	45.7%
3226615	4.1.1.389 ↗	beta barrels › SH3 › SH3 › SH3 › PF30352	0.52	39.0	3.44e-01	86.2%	57.9%
3733166	376.1.2.0 ↗	few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain	0.52	35.0	3.62e-01	72.4%	85.5%
3553625	376.1.1.1 ↗	few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4	0.52	39.0	4.04e-01	86.2%	92.7%
3502373	391.1.1.0 ↗	few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module	0.51	35.0	3.03e-01	74.1%	68.9%
4966836	375.1.1.0 ↗	few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related	0.51	40.0	4.09e-01	87.9%	92.7%
3786396	4.1.1.17 ↗	beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19	0.51	40.0	3.24e-01	91.4%	41.5%
3623169	214.1.1.1 ↗	a+b two layers › SH2 › SH2 › SH2 › SH2	0.51	35.0	2.97e-01	75.9%	40.0%
3605785	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.51	43.0	2.92e-01	100.0%	24.2%
4990492	375.1.1.0 ↗	few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related	0.51	38.0	3.96e-01	93.1%	100.0%
3636735	2003.1.2.15 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3	0.50	43.0	2.74e-01	100.0%	70.5%

D2 high residues 188-243

PDB

D3 medium residues 111-180

PDB

Domain cluster: representative

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3m7kA00	3.30.40.220	Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 ›	0.63	44.0	3.45e-01	72.9%	35.2%
1aueB00	1.20.120.150	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › FKBP12-rapamycin binding domain	0.51	37.0	3.46e-01	90.0%	60.6%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3173177	2004.1.1.24 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom,Helicase_C	0.50	43.0	2.82e-01	100.0%	42.5%