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MT855965.1__QNL13363.1__X__00025

Bact-Vir

MT855965.1__QNL13363.1__X__00025

Identity

Accession:
MT855965 ↗
Kingdom:
phage

Quality

90.8 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 17-147
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00589.28 best Phage_integrase 38.6 1.30e-09 99.2% 68.0%
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3nkhA00 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.82 77.0 6.34e-01 100.0% 69.2%
1ae9A00 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.81 72.0 6.51e-01 100.0% 71.9%
1f44A01 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.77 73.0 6.29e-01 100.0% 71.6%
5jk0B01 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.77 70.0 6.37e-01 100.0% 75.1%
2a3vA02 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.76 71.0 5.98e-01 100.0% 73.9%
4dwpA02 1.10.443.30 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Telomere resolvase 0.59 54.0 4.48e-01 100.0% 60.8%
5e1wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 43.0 4.00e-01 100.0% 66.1%
7dvrA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 39.0 3.86e-01 100.0% 76.6%
ECOD (82)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4996190 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.90 81.0 8.34e-01 100.0% 97.6%
4278298 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.89 81.0 8.02e-01 100.0% 91.9%
5072041 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.89 75.0 7.57e-01 100.0% 88.5%
4120466 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.88 81.0 8.01e-01 100.0% 92.6%
4338286 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.88 78.0 7.76e-01 100.0% 89.6%
4387164 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.88 81.0 8.21e-01 100.0% 96.9%
3590354 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.88 82.0 8.13e-01 100.0% 94.1%
4999495 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.88 78.0 6.85e-01 100.0% 67.2%
4973226 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.88 72.0 7.49e-01 100.0% 92.5%
4153666 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.88 78.0 7.79e-01 100.0% 91.1%
5028332 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.88 74.0 7.58e-01 100.0% 92.0%
4247514 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.87 79.0 7.80e-01 99.2% 91.1%
4580960 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.87 81.0 7.87e-01 100.0% 90.7%
3969558 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.87 77.0 7.66e-01 100.0% 90.4%
5052502 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.87 81.0 8.00e-01 100.0% 94.1%
5052541 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.87 75.0 7.67e-01 100.0% 94.4%
4093657 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.87 77.0 7.70e-01 100.0% 91.1%
3964552 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.86 78.0 7.80e-01 100.0% 92.6%
4118349 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.86 77.0 7.64e-01 100.0% 90.4%
4960057 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.86 79.0 7.73e-01 100.0% 90.0%
4200953 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.86 82.0 7.70e-01 100.0% 92.3%
4261355 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.86 80.0 7.86e-01 97.7% 92.1%
3942448 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.86 82.0 7.79e-01 100.0% 98.0%
3589779 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.86 82.0 7.75e-01 100.0% 96.0%
5003452 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.86 78.0 7.91e-01 100.0% 96.2%
3943512 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.86 79.0 7.88e-01 100.0% 94.1%
4095013 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.86 78.0 7.77e-01 100.0% 93.3%
4975762 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.86 73.0 7.51e-01 100.0% 93.6%
4475168 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.85 78.0 6.67e-01 100.0% 64.6%
4137254 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.85 81.0 7.60e-01 100.0% 94.8%
4044870 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.85 76.0 7.54e-01 100.0% 91.1%
4313957 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.85 81.0 8.04e-01 100.0% 97.8%
4042318 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.85 78.0 7.74e-01 98.5% 93.3%
4929009 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.84 76.0 7.63e-01 100.0% 94.6%
4312876 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.84 77.0 7.81e-01 99.2% 96.9%
3958910 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.84 79.0 7.71e-01 100.0% 92.9%
4004713 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.83 71.0 7.05e-01 100.0% 86.7%
5073434 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.83 79.0 6.72e-01 100.0% 68.5%
5083506 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.83 76.0 6.63e-01 100.0% 67.6%
4453818 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.83 79.0 7.47e-01 100.0% 86.7%
4231677 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.83 79.0 7.56e-01 99.2% 94.5%
4181053 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.83 79.0 6.69e-01 100.0% 66.5%
5082761 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.83 77.0 7.78e-01 97.7% 99.2%
4997941 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.83 78.0 6.53e-01 100.0% 67.6%
3979114 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.83 71.0 7.20e-01 100.0% 91.5%
4166118 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.83 77.0 7.64e-01 100.0% 95.6%
4998614 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.83 78.0 6.53e-01 100.0% 72.4%
4180367 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.83 78.0 7.14e-01 100.0% 92.1%
4981563 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.82 61.0 6.67e-01 76.3% 100.0%
4659012 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.82 78.0 7.48e-01 100.0% 96.6%
4046017 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.82 78.0 7.50e-01 100.0% 94.5%
3588110 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.82 77.0 7.55e-01 100.0% 97.1%
4940128 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.82 74.0 7.57e-01 99.2% 99.2%
1267972 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.82 76.0 7.07e-01 98.5% 98.1%
4964815 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.81 77.0 7.31e-01 100.0% 94.0%
4969226 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.81 75.0 7.49e-01 100.0% 94.8%
5008464 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.81 66.0 5.82e-01 100.0% 60.5%
4927176 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.81 76.0 6.99e-01 100.0% 92.1%
3945160 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.81 73.0 7.34e-01 100.0% 94.6%
3588206 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.80 75.0 7.19e-01 100.0% 90.7%
5016957 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.80 75.0 6.76e-01 100.0% 76.0%
3587110 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.80 76.0 7.25e-01 100.0% 90.7%
4031846 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.80 71.0 7.29e-01 100.0% 98.4%
4931987 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.80 63.0 6.87e-01 97.7% 98.2%
5007182 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.80 61.0 5.78e-01 100.0% 67.1%
5083074 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.80 76.0 7.20e-01 100.0% 92.7%
3941418 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.80 67.0 7.04e-01 100.0% 97.5%
4101478 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.80 75.0 7.26e-01 100.0% 95.9%
3965072 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.80 72.0 7.23e-01 100.0% 95.4%
3964227 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.80 71.0 7.19e-01 100.0% 95.4%
3839627 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.79 73.0 7.27e-01 100.0% 95.6%
3271483 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.78 73.0 6.34e-01 100.0% 75.3%
3251731 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.78 73.0 6.83e-01 100.0% 92.3%
2805 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.77 72.0 7.06e-01 99.2% 92.9%
4964783 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.77 71.0 6.48e-01 100.0% 97.6%
4964778 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.77 70.0 6.38e-01 98.5% 96.5%
4981966 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.76 71.0 6.05e-01 100.0% 64.5%
5058518 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.76 71.0 6.09e-01 100.0% 66.7%
4934137 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.75 70.0 6.64e-01 100.0% 94.2%
5013304 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.75 58.0 6.27e-01 100.0% 97.3%
5008693 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.75 70.0 5.88e-01 100.0% 66.2%
4938259 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.74 68.0 6.54e-01 97.7% 99.3%
D2 high residues 155-204
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5jk0B01 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.88 59.0 3.94e-01 76.0% 20.2%
1u78A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 48.0 4.99e-01 84.0% 86.7%
1ignA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.64 48.0 4.08e-01 88.0% 77.4%
1ignB02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.63 49.0 4.13e-01 90.0% 78.3%
1ug2A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.62 46.0 4.62e-01 90.0% 100.0%
5nl9A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 45.0 4.00e-01 86.0% 57.1%
1wgxA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.57 42.0 3.86e-01 86.0% 63.0%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4959580 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.84 57.0 5.71e-01 76.0% 70.0%
4981564 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.82 57.0 5.50e-01 76.0% 65.5%
3989290 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.80 66.0 6.69e-01 100.0% 90.0%
4608916 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.80 57.0 5.53e-01 92.0% 69.1%
4332912 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.79 54.0 5.44e-01 84.0% 72.0%
4964784 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.78 62.0 6.22e-01 98.0% 90.0%
2417767 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.77 52.0 4.93e-01 76.0% 59.3%
4484837 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.77 55.0 5.38e-01 86.0% 69.1%
4960058 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.76 54.0 5.09e-01 76.0% 66.7%
3956306 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.73 60.0 5.85e-01 100.0% 81.8%
3800383 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.73 60.0 5.55e-01 94.0% 76.9%
4016103 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.73 55.0 5.51e-01 84.0% 90.0%
4390290 101.1.1.13 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 0.70 57.0 5.33e-01 94.0% 80.0%
3676556 101.1.1.250 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding_2 0.64 49.0 4.50e-01 88.0% 65.7%
3514133 101.1.1.3 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding 0.61 49.0 4.69e-01 100.0% 83.1%