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MT855965.1__QNL13388.1__X__00050

Bact-Vir

MT855965.1__QNL13388.1__X__00050

Identity

Accession:
MT855965 ↗
Kingdom:
phage

Quality

88.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Microcystis_phage_vB_MaeS-yong1

TaxID: 2762278

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 38-106
PDB
Domain cluster: rep: MK069556.2__QBF29258.1__X__00026__D42-110
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4urpA00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.63 53.0 3.97e-01 95.7% 51.7%
4ad9A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 47.0 4.46e-01 98.6% 73.8%
3djlA02 6.10.250.600 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.57 35.0 3.86e-01 91.3% 77.8%
1lp1A00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.56 35.0 3.81e-01 78.3% 78.2%
2ejaA00 3.20.20.210 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › 0.56 49.0 3.14e-01 100.0% 26.1%
1lkxC03 1.20.120.720 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain 0.55 44.0 3.92e-01 100.0% 60.7%
3e54A00 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.55 46.0 3.65e-01 100.0% 67.3%
3exmA01 2.40.380.10 Mainly Beta › Beta Barrel › FomD barrel-like fold › FomD-like 0.54 45.0 3.37e-01 97.1% 45.1%
3gr0D01 3.30.70.1780 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 28.0 3.26e-01 81.2% 73.2%
2wnsA00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 45.0 3.34e-01 98.6% 98.0%
2p92A00 3.30.70.1490 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp 0.52 36.0 3.27e-01 71.0% 70.5%
2yzkA00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 41.0 3.17e-01 92.8% 100.0%
2mkyA00 3.30.70.1530 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hypothetical protein rpa1041 0.51 30.0 3.16e-01 88.4% 63.8%
2h92A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 45.0 3.14e-01 97.1% 47.7%
3hrzB01 2.20.130.20 Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › 0.50 33.0 3.23e-01 95.7% 60.5%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3883105 3226.1.1.1 ↗ alpha complex topology › Uracil Transporter UraA › Uracil Transporter UraA › Uracil Transporter UraA › Xan_ur_permease 0.67 57.0 3.43e-01 97.1% 55.0%
3649913 5050.1.1.58 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › NFD4_C 0.65 38.0 2.82e-01 92.8% 22.9%
5049161 177.1.1.0 ↗ alpha bundles › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease 0.64 51.0 3.72e-01 91.3% 82.9%
3786716 101.1.2.12 ↗ alpha arrays › HTH › HTH › winged helix domain › DEP 0.62 53.0 4.54e-01 97.1% 86.1%
5022426 304.25.1.1 ↗ a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.62 45.0 3.80e-01 78.3% 74.2%
2505916 101.1.1.39 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Phage_antitermQ 0.62 44.0 3.52e-01 78.3% 82.1%
4964555 3604.1.1.1 ↗ a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion 0.61 46.0 4.69e-01 95.7% 87.7%
3742869 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 51.0 4.51e-01 97.1% 94.3%
5040756 3843.1.1.0 ↗ alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K 0.60 49.0 4.49e-01 92.8% 100.0%
3623214 327.11.2.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.59 37.0 3.44e-01 89.9% 48.9%
3639347 524.1.1.8 ↗ alpha arrays › Ypt/Rab-GAP domain of gyp1p-like › Ypt/Rab-GAP domain of gyp1p › Ypt/Rab-GAP domain of gyp1p › RabGAP-TBC, RabGap-TBC_2 0.59 41.0 3.04e-01 84.1% 27.0%
3759086 3016.1.1.21 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › PDXDC1-like_cen 0.59 42.0 3.42e-01 87.0% 37.2%
4928786 5081.1.1.1 ↗ alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid 0.58 41.0 2.93e-01 75.4% 61.9%
4961785 186.1.1.0 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.58 50.0 3.96e-01 100.0% 88.7%
4011706 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.58 46.0 2.70e-01 91.3% 23.0%
None — 0.57 48.0 4.09e-01 100.0% 63.2%
3699192 2484.1.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin 0.57 46.0 3.18e-01 92.8% 73.6%
4980158 2006.1.1.18 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.57 42.0 2.97e-01 91.3% 24.0%
3505042 327.11.2.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.55 35.0 3.34e-01 88.4% 54.2%
3948634 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 47.0 4.32e-01 100.0% 77.9%
3934420 5001.1.1.44 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srv 0.54 38.0 2.85e-01 78.3% 40.5%
3575404 207.1.1.141 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_5, LRR_8 0.54 42.0 2.45e-01 98.6% 9.4%
3290009 4107.1.1.1 ↗ alpha arrays › Jann2411-like › Jann2411-like › Jann2411-like › ABATE,zf-CGNR 0.54 44.0 3.34e-01 91.3% 76.5%
4125586 7573.1.1.1 ↗ a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran 0.52 43.0 3.20e-01 94.2% 95.3%
3286207 304.37.1.0 ↗ a+b two layers › Alpha-beta plaits › Sulfite reductase, domains 1 and 3 › Sulfite reductase, domains 1 and 3 0.52 31.0 3.09e-01 91.3% 53.3%
1194165 3016.1.1.0 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.52 40.0 3.17e-01 82.6% 46.3%
3738064 304.112.1.0 ↗ a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain 0.52 43.0 3.87e-01 97.1% 76.0%
3802552 601.1.1.91 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › DUF1218 0.52 40.0 3.08e-01 85.5% 62.4%
3565650 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.51 30.0 2.80e-01 95.7% 43.3%
4093446 2002.1.1.57 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › URO-D 0.51 43.0 2.79e-01 95.7% 25.8%
4093657 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.51 44.0 3.60e-01 100.0% 77.8%
3968916 101.1.9.63 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › Bro-N 0.50 42.0 3.75e-01 97.1% 94.3%
3994523 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.50 38.0 3.88e-01 85.5% 85.7%