←Back to structures

MT863715.1__QPX63065.1__F336_107__00107

Bact-Vir

MT863715.1__QPX63065.1__F336_107__00107

Identity

Accession:
MT863715 ↗
Kingdom:
phage

Quality

82.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Connertonviridae› Fletchervirus› Campylobacter_phage_F336

TaxID: 2794361

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-59
PDB
Domain cluster: rep: SRR1747021_scaffold_144_prodigal-single.1__X__X__00046__D4-52
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3oymA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 48.0 4.47e-01 73.7% 90.0%
1b8gA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.68 51.0 3.68e-01 80.7% 53.7%
2x3lA01 3.90.1150.150 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.66 50.0 4.07e-01 80.7% 74.3%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 46.0 4.40e-01 73.7% 76.5%
2dk3A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 45.0 4.00e-01 73.7% 73.3%
1xmbA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.65 54.0 3.58e-01 100.0% 87.2%
1s68A02 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.65 43.0 3.52e-01 70.2% 56.6%
4dq2A03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.64 43.0 4.69e-01 70.2% 95.7%
3npfB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 44.0 4.21e-01 71.9% 92.4%
2k5nA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 42.0 3.95e-01 70.2% 67.6%
2ldmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 42.0 4.39e-01 70.2% 92.5%
3d0fA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 42.0 3.87e-01 70.2% 86.3%
7razA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 45.0 4.04e-01 80.7% 61.2%
5yrzB00 3.30.920.30 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. 0.60 45.0 4.51e-01 82.5% 93.1%
6psyA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.60 42.0 2.91e-01 77.2% 74.9%
4dapA01 2.40.50.580 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 40.0 3.62e-01 70.2% 72.5%
1r9cA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.60 44.0 3.52e-01 82.5% 80.0%
5ajiB02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.59 42.0 4.38e-01 73.7% 92.0%
4hs5A00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.59 46.0 3.91e-01 91.2% 81.0%
2ra9A02 2.30.270.10 Mainly Beta › Roll › duf1285 protein fold › duf1285 protein 0.59 41.0 3.81e-01 73.7% 64.4%
1vgyA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.59 48.0 3.17e-01 94.7% 90.4%
1yr1A00 3.40.50.10960 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.58 46.0 3.73e-01 91.2% 52.1%
2re3A02 2.30.270.10 Mainly Beta › Roll › duf1285 protein fold › duf1285 protein 0.58 40.0 3.81e-01 73.7% 78.6%
4oonA03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 45.0 3.69e-01 84.2% 93.3%
1rypD00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.57 40.0 2.73e-01 77.2% 54.4%
3udfA03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 44.0 3.76e-01 84.2% 92.6%
2dl5A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 39.0 3.62e-01 73.7% 76.9%
1y13A00 3.30.479.10 Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › 6-pyruvoyl tetrahydropterin synthase/QueD 0.56 38.0 2.75e-01 70.2% 25.8%
3psiA06 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 40.0 3.37e-01 77.2% 59.0%
4wfsA01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.56 37.0 2.50e-01 70.2% 95.0%
4in3B00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.55 39.0 2.28e-01 77.2% 10.2%
1ugiD00 3.10.450.20 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Bacteriophage PBS2, uracil-glycosylase inhibitor 0.55 43.0 3.92e-01 91.2% 93.9%
5h80B03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.55 44.0 3.01e-01 96.5% 73.7%
2pm9A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 44.0 2.75e-01 89.5% 27.8%
6rjiA03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 37.0 3.89e-01 77.2% 76.9%
4opmA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.54 46.0 2.99e-01 100.0% 75.6%
3n4rA00 3.90.1150.80 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.54 42.0 3.70e-01 89.5% 96.8%
1ukfA00 3.90.70.20 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.54 41.0 2.96e-01 86.0% 31.4%
8c0zE01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 38.0 3.01e-01 77.2% 93.1%
4c5wA01 3.30.2020.30 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › 0.54 39.0 3.40e-01 80.7% 93.8%
2qetA02 4.10.470.10 Few Secondary Structures › Irregular › Ricin (A Subunit), domain 2 › Ricin (A Subunit), domain 2 0.53 36.0 3.31e-01 71.9% 86.4%
2zkmX01 2.30.29.240 Mainly Beta › Roll › PH-domain like › 0.53 36.0 2.51e-01 70.2% 46.1%
3e5zA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.53 40.0 2.67e-01 89.5% 23.1%
2uz8A01 3.40.30.90 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › 0.52 39.0 4.00e-01 84.2% 94.4%
1aisA02 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.52 38.0 3.50e-01 94.7% 56.3%
3ol0B00 6.20.90.30 Special › Other non-globular › SH3 type barrels. › 0.52 30.0 3.41e-01 70.2% 68.3%
3ayjA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 34.0 2.11e-01 82.5% 10.3%
1x6oA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 35.0 3.26e-01 75.4% 78.5%
4py5A01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.51 36.0 3.42e-01 77.2% 79.2%
2rloA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 34.0 2.76e-01 73.7% 77.3%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5081654 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.80 70.0 6.91e-01 98.2% 98.3%
3500406 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.68 49.0 3.00e-01 77.2% 22.5%
3544925 4.1.1.50 ↗ beta barrels › SH3 › SH3 › SH3 › MIB_HERC2 0.68 47.0 3.81e-01 73.7% 57.3%
3329054 3016.1.1.1 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_1_2 0.67 51.0 4.03e-01 84.2% 73.6%
1289661 4.1.1.101 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.67 46.0 4.37e-01 71.9% 74.6%
1152753 3016.1.1.1 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_1_2 0.66 50.0 4.03e-01 84.2% 77.3%
3256431 4.1.1.360 ↗ beta barrels › SH3 › SH3 › SH3 › KOW, G-patch_2 0.66 46.0 4.09e-01 71.9% 62.5%
3810217 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 46.0 4.82e-01 75.4% 100.0%
3993250 4.1.1.333 ↗ beta barrels › SH3 › SH3 › SH3 › PF29330 0.65 46.0 4.67e-01 73.7% 89.1%
4112414 2004.1.1.301 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_27 0.65 47.0 2.90e-01 77.2% 69.9%
3893368 4.1.1.99 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_10 0.65 45.0 4.37e-01 73.7% 93.8%
3623890 4.1.1.322 ↗ beta barrels › SH3 › SH3 › SH3 › GPKOW_C 0.65 45.0 4.01e-01 73.7% 65.9%
4997572 3016.1.1.0 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.65 55.0 4.55e-01 100.0% 92.7%
3222147 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 45.0 4.48e-01 73.7% 93.3%
3491137 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.64 44.0 4.39e-01 71.9% 93.3%
3840052 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 43.0 5.03e-01 70.2% 100.0%
3304602 4.1.1.427 ↗ beta barrels › SH3 › SH3 › SH3 › F-box 0.64 44.0 3.77e-01 71.9% 51.6%
3626531 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.64 44.0 3.83e-01 73.7% 65.6%
3621818 4.1.1.333 ↗ beta barrels › SH3 › SH3 › SH3 › PF29330 0.63 45.0 4.74e-01 73.7% 96.0%
3510676 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 45.0 3.81e-01 73.7% 55.8%
3263031 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 44.0 4.24e-01 73.7% 87.7%
4091771 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 44.0 4.38e-01 73.7% 91.7%
3487936 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 43.0 4.03e-01 71.9% 77.1%
4134876 4.1.1.334 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1, SH3_2 0.63 44.0 3.14e-01 73.7% 58.8%
4357648 6020.1.1.1 ↗ a+b two layers › Beta domain of DivIB/FtsQ › Beta domain of DivIB/FtsQ › Beta domain of DivIB/FtsQ › FtsQ_DivIB_C 0.62 51.0 4.08e-01 96.5% 53.6%
3556321 4.1.1.118 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_15 0.62 44.0 3.97e-01 73.7% 87.5%
4185536 101.8.1.4 ↗ alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › tRNA-synt_1f 0.62 44.0 2.59e-01 75.4% 13.6%
3702915 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.62 43.0 4.24e-01 71.9% 91.7%
4110542 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.62 47.0 3.86e-01 84.2% 70.0%
1068760 4.1.1.102 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.62 42.0 3.85e-01 71.9% 62.8%
4475219 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.62 46.0 3.67e-01 84.2% 58.5%
None — 0.62 43.0 2.83e-01 75.4% 26.2%
3701382 312.1.1.8 ↗ a+b three layers › HIT-like › HIT-related › HIT-related › DcpS_C 0.61 44.0 2.88e-01 77.2% 94.6%
5038405 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 43.0 4.70e-01 73.7% 93.3%
3571487 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 45.0 4.18e-01 80.7% 82.2%
2330317 330.7.1.2 ↗ a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain › HicA_toxin 0.60 45.0 4.51e-01 82.5% 93.1%
5073265 3016.1.1.0 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.60 49.0 4.03e-01 96.5% 97.4%
3240347 3016.1.1.1 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_1_2 0.59 46.0 3.29e-01 89.5% 47.4%
3494765 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.58 46.0 3.17e-01 91.2% 49.1%
3469125 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.57 39.0 3.14e-01 73.7% 63.1%
3404643 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 42.0 4.02e-01 80.7% 90.0%
5014724 295.1.1.51 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › FtsQ_DivIB_C 0.56 40.0 3.44e-01 80.7% 44.0%
4940177 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 41.0 3.97e-01 82.5% 88.6%
4965077 4161.1.1.2 ↗ beta complex topology › MOSC N-terminal domain-like › MOSC N-terminal domain-like › MOSC N-terminal domain-like › MOSC_N 0.56 42.0 2.83e-01 84.2% 32.7%
3696633 3393.1.1.2 ↗ extended segments › CAA3-type cytochrome c oxidase subunit IV › CAA3-type cytochrome c oxidase subunit IV › CAA3-type cytochrome c oxidase subunit IV › Kinesin_assoc 0.56 38.0 3.26e-01 71.9% 52.6%
3875067 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.56 38.0 2.79e-01 71.9% 31.2%
3804264 64.1.1.8 ↗ beta meanders › WW domain-like › WW domain › WW domain › DUF7028 0.55 40.0 3.65e-01 84.2% 61.2%
3595133 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 43.0 2.66e-01 87.7% 40.0%
3242411 719.2.1.1 ↗ beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N 0.54 39.0 3.27e-01 80.7% 86.4%
3992786 11.1.1.1176 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Beta-prop_Rol-3 0.54 38.0 2.48e-01 87.7% 14.1%
3384540 2485.1.1.122 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin, Thioredoxin_6 0.53 40.0 2.74e-01 87.7% 29.0%
3914367 5.1.2.44 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Beta-prop_HPS5 0.53 43.0 3.38e-01 100.0% 83.8%
4998989 3740.1.1.4 ↗ alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.53 38.0 2.50e-01 78.9% 40.7%
4119657 3740.1.1.1 ↗ alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_N,FrhB_FdhB_C 0.52 39.0 2.54e-01 80.7% 21.1%
5059435 2485.1.1.61 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › DCC1-like 0.52 38.0 3.40e-01 82.5% 74.4%
4949942 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 37.0 3.35e-01 80.7% 79.5%
3722125 2003.1.2.18 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.51 43.0 2.64e-01 94.7% 95.7%
3582085 5.1.4.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,ANAPC4_WD40 0.51 40.0 2.76e-01 89.5% 33.0%
3476114 2484.1.1.1 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 0.51 36.0 2.22e-01 75.4% 10.9%
3659428 3556.1.1.1 ↗ a+b two layers › Uncharacterized Protein Rru_A0810 › Uncharacterized Protein Rru_A0810 › Uncharacterized Protein Rru_A0810 › DUF3223 0.50 36.0 3.15e-01 78.9% 77.3%