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MT880870.1__QPB07621.1__PLKLOBMN_00050__00050

Bact-Vir

MT880870.1__QPB07621.1__PLKLOBMN_00050__00050

Identity

Accession:
MT880870 ↗
Kingdom:
phage

Quality

81.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Staphylococcus_phage_PhiSepi-HH1

TaxID: 2782524

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-95
PDB
Domain cluster: rep: MK448924.1__QBX27354.1__Javan384_0019__00046__D41-152
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF14265.12 best DUF4355 82.4 4.20e-23 100.0% 73.4%
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3b8mC02 1.10.287.210 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.68 42.0 4.08e-01 72.6% 55.8%
1lj2A00 1.20.5.970 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Nonstructural RNA-binding protein 0.66 52.0 5.05e-01 84.2% 84.0%
7p3rA01 1.20.1170.10 Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › 0.61 50.0 3.37e-01 88.4% 25.2%
2kbwA01 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.58 37.0 3.12e-01 71.6% 39.2%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4032135 632.2.1.39 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › DUF4355 0.89 71.0 7.72e-01 85.3% 98.8%
3596574 192.8.1.0 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.81 57.0 4.69e-01 73.7% 45.5%
3752375 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.78 44.0 3.42e-01 83.2% 27.7%
3461533 3755.3.1.610 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › UPF0114 0.77 54.0 4.90e-01 72.6% 57.6%
4043617 5001.1.1.0 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.66 55.0 3.95e-01 91.6% 99.6%
4975688 547.1.1.4 ↗ alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Shikimate_DH 0.66 48.0 3.54e-01 77.9% 32.7%
3448339 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.65 44.0 3.80e-01 70.5% 80.7%
3617266 632.1.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain 0.63 48.0 4.50e-01 82.1% 100.0%
3497236 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.62 48.0 3.39e-01 82.1% 44.9%
4476621 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.61 43.0 4.37e-01 72.6% 80.0%
3691418 601.19.1.21 ↗ alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › DUF7605 0.60 48.0 3.51e-01 87.4% 81.5%
3708249 604.5.1.31 ↗ alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › TRAM_LAG1_CLN8 0.57 41.0 3.05e-01 75.8% 67.5%
3560758 109.4.1.471 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › GCFC 0.53 40.0 3.23e-01 82.1% 100.0%
3937465 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.51 40.0 3.25e-01 91.6% 50.7%