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MT880871.1__QPB07666.1__PLKLOBMN_00095__00044

Bact-Vir

MT880871.1__QPB07666.1__PLKLOBMN_00095__00044

Identity

Accession:
MT880871 ↗
Kingdom:
phage

Quality

88.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Staphylococcus_phage_PI-Sepi-HH2

TaxID: 2782523

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-62
PDB
Domain cluster: representative
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4gzrC00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.81 67.0 6.80e-01 90.3% 95.1%
2db7A01 6.10.250.980 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.81 62.0 6.65e-01 82.3% 100.0%
2e62A01 6.10.140.420 Special › Helix non-globular › Helix Hairpins › 0.77 54.0 5.83e-01 74.2% 100.0%
3txsC01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.76 67.0 6.33e-01 100.0% 100.0%
4dlqA02 1.25.40.610 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.76 64.0 5.59e-01 98.4% 62.1%
3fppA03 6.10.140.1990 Special › Helix non-globular › Helix Hairpins › 0.74 65.0 5.79e-01 98.4% 97.7%
3fxdB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.72 59.0 6.10e-01 90.3% 98.3%
2kwhA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.70 53.0 5.54e-01 83.9% 94.6%
3hr0B01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.70 61.0 5.67e-01 100.0% 92.4%
2rp4A00 6.10.280.60 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Transcription factor p53, C-terminal domain 0.70 50.0 4.86e-01 82.3% 67.6%
2itbB00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.69 61.0 4.29e-01 100.0% 56.1%
4nb5B02 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.69 58.0 5.82e-01 96.8% 100.0%
3icxA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.69 60.0 5.64e-01 98.4% 97.3%
1zpyA00 6.10.140.1960 Special › Helix non-globular › Helix Hairpins › 0.68 60.0 5.27e-01 96.8% 67.0%
3ce2A01 1.20.140.70 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Oligopeptidase f, N-terminal domain 0.68 57.0 4.36e-01 96.8% 39.6%
1lrzA03 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.68 58.0 5.89e-01 96.8% 100.0%
2hepA00 1.10.287.540 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.67 44.0 5.02e-01 75.8% 100.0%
4iggA01 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.66 56.0 5.53e-01 96.8% 91.0%
3qdnA02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.65 38.0 3.42e-01 72.6% 41.7%
2xzmO02 1.10.287.10 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding 0.65 51.0 4.96e-01 90.3% 75.7%
3u4qA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.65 53.0 3.60e-01 91.9% 30.3%
3vm9A02 6.10.140.2110 Special › Helix non-globular › Helix Hairpins › 0.64 52.0 5.37e-01 90.3% 96.5%
7ymiZ01 1.10.287.740 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Photosystem II PsbZ, reaction centre 0.63 53.0 5.47e-01 91.9% 98.3%
1b04A03 1.10.287.610 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.63 46.0 4.68e-01 82.3% 79.0%
1e52A00 4.10.860.10 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain 0.61 46.0 4.80e-01 90.3% 96.4%
4gywA02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.60 38.0 3.21e-01 72.6% 36.0%
5mmjb02 1.10.287.610 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.59 40.0 4.28e-01 74.2% 82.7%
5u1xA01 1.10.287.940 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › atp-gated p2x4 ion channel 0.57 39.0 4.22e-01 75.8% 100.0%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3168913 228.1.1.1 ↗ a+b three layers › Fe,Mn superoxide dismutase (SOD)-C › Fe,Mn superoxide dismutase (SOD)-C › Fe,Mn superoxide dismutase (SOD)-C › Sod_Fe_C 0.77 65.0 4.63e-01 100.0% 31.1%
3830963 603.1.1.100 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF27017 0.76 68.0 5.47e-01 100.0% 54.2%
4934444 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.74 66.0 6.32e-01 96.8% 87.1%
4946547 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.74 64.0 5.24e-01 100.0% 55.0%
1176726 4325.1.1.2 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like › P53_C 0.71 51.0 4.93e-01 82.3% 67.6%
3613914 3922.1.1.0 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.70 62.0 5.80e-01 96.8% 81.3%
3386800 192.8.1.0 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.70 59.0 6.02e-01 93.5% 100.0%
5020290 601.1.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.68 52.0 5.46e-01 87.1% 92.7%
4932775 616.1.1.1 ↗ alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › Ribosomal_S15 0.68 51.0 5.09e-01 83.9% 76.9%
D2 medium residues 67-243
PDB
Domain cluster: representative
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1yi9A02 2.60.120.230 Mainly Beta › Sandwich › Jelly Rolls › 0.61 37.0 4.14e-01 88.1% 75.9%
6b9tF02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.61 33.0 4.19e-01 87.6% 87.2%
3winE03 2.60.120.1090 Mainly Beta › Sandwich › Jelly Rolls › 0.58 33.0 4.12e-01 71.8% 90.0%
2xbzA00 2.60.40.2380 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 40.0 4.59e-01 88.7% 94.7%
2pn5A05 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.56 29.0 3.85e-01 79.7% 90.6%
3g7dA03 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 36.0 4.24e-01 90.4% 91.9%
5lz6A00 2.60.120.680 Mainly Beta › Sandwich › Jelly Rolls › GOLD domain 0.56 32.0 3.72e-01 71.8% 77.0%
1w0nA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.55 35.0 4.23e-01 85.9% 95.0%
3zm8A01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 36.0 4.16e-01 87.6% 92.9%
1v70A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 30.0 3.73e-01 71.2% 88.6%
4a42A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 35.0 4.09e-01 87.6% 92.1%
1pk6C00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.53 35.0 4.08e-01 85.9% 92.2%
4devD01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 32.0 3.77e-01 88.1% 84.8%
5fuiA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 35.0 4.08e-01 85.3% 95.2%
4ht1T00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.52 36.0 4.11e-01 86.4% 93.9%
3skvA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 37.0 3.93e-01 89.3% 83.1%
1yudA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 36.0 3.83e-01 71.8% 80.6%
3nqhA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 35.0 4.00e-01 87.0% 90.4%
3loiA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 36.0 3.79e-01 71.8% 81.2%
6ovbA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 36.0 3.84e-01 87.6% 82.5%
4f3jA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.50 36.0 4.00e-01 88.1% 91.6%
1tvgA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.50 35.0 3.89e-01 87.6% 91.2%
4oumA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.50 34.0 3.90e-01 85.9% 93.2%
ECOD (38)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5041113 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.65 34.0 4.67e-01 85.3% 100.0%
5055086 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.63 33.0 4.34e-01 70.6% 92.6%
5036139 10.7.1.0 ↗ beta sandwiches › jelly-roll › Hypothetical protein TM1070 › Hypothetical protein TM1070 0.62 32.0 4.21e-01 88.1% 93.3%
4950754 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.61 33.0 4.21e-01 71.2% 89.4%
4000177 10.7.1.0 ↗ beta sandwiches › jelly-roll › Hypothetical protein TM1070 › Hypothetical protein TM1070 0.60 32.0 4.22e-01 71.2% 98.9%
5084067 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.59 33.0 4.26e-01 85.3% 97.9%
5039364 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.58 31.0 4.21e-01 73.4% 100.0%
5040234 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.58 34.0 4.11e-01 72.9% 88.7%
3973531 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.58 42.0 4.63e-01 88.7% 93.6%
4092778 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.57 38.0 4.33e-01 88.1% 90.0%
5045353 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.57 33.0 4.02e-01 87.6% 87.0%
5040182 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.57 33.0 3.99e-01 72.3% 88.2%
3796900 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.56 33.0 3.88e-01 71.8% 83.2%
3927098 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.56 34.0 4.21e-01 87.0% 96.4%
4172901 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.55 32.0 3.89e-01 71.2% 87.0%
1298682 10.32.1.168 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › HA70_C 0.55 41.0 4.58e-01 98.3% 100.0%
2417794 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.55 35.0 4.07e-01 74.0% 88.8%
3908435 10.3.1.1 ↗ beta sandwiches › jelly-roll › TNF-like › TNF-like › TNF 0.55 35.0 4.07e-01 85.3% 86.9%
4153058 10.32.1.51 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_35 0.55 36.0 4.17e-01 88.1% 91.5%
3246388 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.54 31.0 3.62e-01 85.9% 79.8%
3489211 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.53 36.0 4.29e-01 80.2% 100.0%
4416110 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.53 33.0 3.89e-01 88.7% 89.2%
5041729 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.53 35.0 3.95e-01 85.9% 85.9%
1258 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.53 32.0 3.82e-01 72.9% 87.6%
1144 10.32.1.12 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_6 0.53 36.0 4.14e-01 87.6% 93.9%
4277317 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.53 32.0 3.60e-01 88.7% 77.8%
4035909 10.3.1.2 ↗ beta sandwiches › jelly-roll › TNF-like › TNF-like › C1q 0.52 35.0 3.95e-01 85.9% 88.1%
3902170 10.3.1.2 ↗ beta sandwiches › jelly-roll › TNF-like › TNF-like › C1q 0.52 34.0 3.96e-01 72.3% 93.6%
3537016 10.3.1.2 ↗ beta sandwiches › jelly-roll › TNF-like › TNF-like › C1q 0.51 33.0 3.90e-01 72.3% 92.7%
3382260 10.12.1.40 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › JmjC_2 0.51 37.0 3.03e-01 72.9% 74.9%
139402 10.12.1.31 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_5 0.51 36.0 3.78e-01 71.8% 80.7%
1762256 10.32.1.51 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_35 0.51 35.0 3.92e-01 85.3% 91.7%
4646750 10.32.1.12 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_6 0.51 33.0 3.83e-01 89.8% 91.2%
3879619 10.3.1.2 ↗ beta sandwiches › jelly-roll › TNF-like › TNF-like › C1q 0.51 35.0 3.78e-01 87.0% 82.7%
4945064 10.1.2.192 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › Big_7 0.51 32.0 3.81e-01 87.0% 95.7%
4459811 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.50 31.0 3.69e-01 88.1% 90.0%
5003406 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.50 38.0 4.27e-01 98.3% 100.0%
4546057 10.32.1.12 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_6 0.50 34.0 3.82e-01 86.4% 89.6%