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MT880872.1__QPB07833.1__PLKLOBMN_00262__00166
Bact-VirMT880872.1__QPB07833.1__PLKLOBMN_00262__00166
Identity
- Accession:
- MT880872 ↗
- Kingdom:
- phage
Quality
95.5
mean pLDDT
Taxonomy
TaxID: 2782522
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 380-533
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF24877.2 best | ILV_EDD_C | 219.7 | 3.10e-65 | 100.0% | 79.0% |
CATH (35)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5ze4A01 | 3.50.30.80 | Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › IlvD/EDD C-terminal domain-like | 0.95 | 92.0 | 8.76e-01 | 100.0% | 87.9% |
| 2gp4A03 | 3.50.30.80 | Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › IlvD/EDD C-terminal domain-like | 0.91 | 84.0 | 8.51e-01 | 98.1% | 97.4% |
| 5j83B01 | 3.50.30.80 | Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › IlvD/EDD C-terminal domain-like | 0.90 | 87.0 | 8.47e-01 | 100.0% | 94.6% |
| 5oynA01 | 3.50.30.80 | Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › IlvD/EDD C-terminal domain-like | 0.87 | 80.0 | 7.85e-01 | 95.5% | 98.2% |
| 1zymA01 | 3.50.30.10 | Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › Phosphohistidine domain | 0.72 | 48.0 | 5.34e-01 | 85.7% | 86.0% |
| 3nojA01 | 3.50.30.40 | Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › Ribonuclease E inhibitor RraA/RraA-like | 0.71 | 60.0 | 6.08e-01 | 88.3% | 99.3% |
| 3iibA02 | 3.50.30.30 | Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › | 0.70 | 56.0 | 5.70e-01 | 83.1% | 99.3% |
| 4tweA02 | 3.50.30.30 | Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › | 0.65 | 51.0 | 4.46e-01 | 82.5% | 97.8% |
| 4c84A00 | 3.50.30.30 | Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › | 0.63 | 51.0 | 5.28e-01 | 83.8% | 98.6% |
| 1xx1A00 | 3.20.20.190 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphatidylinositol (PI) phosphodiesterase | 0.60 | 45.0 | 3.68e-01 | 77.9% | 78.2% |
| 1h7nA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.60 | 45.0 | 3.47e-01 | 77.9% | 62.9% |
| 3m1lA02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.59 | 42.0 | 3.87e-01 | 73.4% | 96.6% |
| 3e48A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.58 | 42.0 | 4.03e-01 | 75.3% | 100.0% |
| 5wqoB00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.58 | 41.0 | 3.66e-01 | 71.4% | 97.3% |
| 2i5bA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.58 | 45.0 | 3.75e-01 | 81.8% | 94.8% |
| 3kzsA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.58 | 47.0 | 4.04e-01 | 85.7% | 92.3% |
| 4jhmA02 | 3.20.20.120 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain | 0.57 | 43.0 | 3.60e-01 | 77.9% | 77.8% |
| 2cqaA01 | 2.40.50.360 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain | 0.56 | 28.0 | 3.88e-01 | 75.3% | 97.3% |
| 5yrpA00 | 3.20.20.450 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain | 0.56 | 42.0 | 3.73e-01 | 77.9% | 83.5% |
| 3fcxB00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.55 | 39.0 | 3.19e-01 | 71.4% | 50.9% |
| 4c6sA00 | 3.40.50.10140 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Toll/interleukin-1 receptor homology (TIR) domain | 0.54 | 38.0 | 3.94e-01 | 71.4% | 98.6% |
| 3focA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.54 | 40.0 | 3.26e-01 | 76.0% | 67.7% |
| 1dtnA02 | 3.20.20.120 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain | 0.54 | 40.0 | 3.52e-01 | 77.3% | 71.7% |
| 4nwyA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.53 | 30.0 | 3.30e-01 | 85.1% | 65.6% |
| 3ro6A02 | 3.20.20.120 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain | 0.53 | 41.0 | 3.49e-01 | 79.2% | 81.7% |
| 3hv8A00 | 3.20.20.450 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain | 0.53 | 40.0 | 3.49e-01 | 79.2% | 82.6% |
| 7jt8I02 | 3.90.190.20 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Mur ligase, C-terminal domain | 0.53 | 40.0 | 4.19e-01 | 79.9% | 95.1% |
| 3nl6B01 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.53 | 43.0 | 3.82e-01 | 87.0% | 64.6% |
| 5gu7C01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.53 | 30.0 | 3.34e-01 | 87.7% | 69.1% |
| 6zb8A01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.52 | 45.0 | 3.46e-01 | 93.5% | 98.3% |
| 2yr1A00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.52 | 42.0 | 3.60e-01 | 87.7% | 89.5% |
| 5z3kB01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.52 | 46.0 | 3.57e-01 | 96.1% | 87.6% |
| 4eo3A01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.52 | 38.0 | 3.99e-01 | 92.2% | 85.5% |
| 3i6eA02 | 3.20.20.120 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain | 0.51 | 38.0 | 3.29e-01 | 77.9% | 67.2% |
| 2nytD00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.51 | 39.0 | 3.70e-01 | 81.2% | 68.2% |
ECOD (52)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4239929 | 2487.1.1.19 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › ILV_EDD_C | 0.98 | 95.0 | 8.81e-01 | 100.0% | 83.1% |
| 4481287 | 2007.1.20.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Dehydratase-like › ILV_EDD_C | 0.98 | 96.0 | 8.62e-01 | 100.0% | 83.3% |
| 3966870 | 2487.1.1.0 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" | 0.98 | 96.0 | 8.77e-01 | 100.0% | 85.8% |
| 4458993 | 2487.1.1.19 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › ILV_EDD_C | 0.98 | 96.0 | 8.66e-01 | 100.0% | 83.6% |
| 4582769 | 2487.1.1.19 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › ILV_EDD_C | 0.98 | 96.0 | 8.56e-01 | 100.0% | 82.0% |
| 4315745 | 2007.1.20.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Dehydratase-like › ILV_EDD_C | 0.97 | 95.0 | 8.69e-01 | 100.0% | 86.8% |
| 4184190 | 2007.1.20.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Dehydratase-like › ILV_EDD_C | 0.97 | 95.0 | 8.90e-01 | 100.0% | 85.6% |
| 4599956 | 2007.1.20.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Dehydratase-like | 0.97 | 94.0 | 8.66e-01 | 100.0% | 82.2% |
| 4007572 | 2487.1.1.19 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › ILV_EDD_C | 0.93 | 90.0 | 7.77e-01 | 100.0% | 78.2% |
| 4044975 | 2487.1.1.19 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › ILV_EDD_C | 0.91 | 88.0 | 8.08e-01 | 100.0% | 82.6% |
| 11420 | 2487.1.1.19 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › ILV_EDD_C | 0.90 | 85.0 | 7.82e-01 | 100.0% | 79.5% |
| 3730809 | 2487.1.1.19 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › ILV_EDD_C | 0.90 | 87.0 | 7.64e-01 | 100.0% | 85.2% |
| 3696554 | 2487.1.1.19 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › ILV_EDD_C | 0.89 | 85.0 | 7.45e-01 | 100.0% | 79.4% |
| 5071293 | 2487.1.1.19 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › ILV_EDD_C | 0.76 | 59.0 | 6.57e-01 | 81.2% | 100.0% |
| 5064804 | 2487.1.1.2 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › PEP-utilizers | 0.72 | 45.0 | 5.23e-01 | 87.7% | 86.4% |
| 5000005 | 2487.1.1.8 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › RraA-like | 0.71 | 61.0 | 5.26e-01 | 89.0% | 69.1% |
| 4286959 | 2487.1.1.2 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › PEP-utilizers | 0.71 | 47.0 | 5.28e-01 | 87.7% | 85.8% |
| 4157266 | 2487.1.1.8 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › RraA-like | 0.71 | 60.0 | 5.40e-01 | 89.0% | 74.1% |
| 1790157 | 2487.1.1.8 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › RraA-like | 0.70 | 60.0 | 5.12e-01 | 89.0% | 64.7% |
| 4929983 | 2487.1.1.8 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › RraA-like | 0.70 | 60.0 | 5.31e-01 | 89.0% | 71.8% |
| 4974686 | 2487.1.1.8 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › RraA-like | 0.70 | 59.0 | 5.40e-01 | 89.0% | 76.4% |
| 3626802 | 2487.1.1.13 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › Ncstrn_small | 0.69 | 57.0 | 4.95e-01 | 87.0% | 97.0% |
| 4993078 | 2487.1.1.8 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › RraA-like | 0.68 | 59.0 | 4.18e-01 | 90.3% | 35.3% |
| 4952760 | 2487.1.1.8 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › RraA-like | 0.68 | 58.0 | 5.38e-01 | 90.3% | 81.6% |
| 3520585 | 2487.1.1.13 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › Ncstrn_small | 0.68 | 55.0 | 4.73e-01 | 87.0% | 95.5% |
| 4847775 | 2487.1.1.12 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › ZNRF_3_ecto | 0.66 | 53.0 | 5.33e-01 | 83.8% | 96.8% |
| 3189659 | 2487.1.1.7 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › PA | 0.66 | 52.0 | 4.36e-01 | 83.1% | 96.9% |
| 3422239 | 2487.1.1.7 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › PA | 0.65 | 52.0 | 4.48e-01 | 83.1% | 95.7% |
| 3647077 | 2487.1.1.7 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › PA | 0.65 | 52.0 | 4.51e-01 | 84.4% | 99.1% |
| 3695270 | 2487.1.1.7 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › PA | 0.64 | 52.0 | 4.71e-01 | 84.4% | 96.5% |
| 4502867 | 2002.1.1.97 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › TMP-TENI | 0.60 | 51.0 | 4.34e-01 | 90.3% | 65.7% |
| 1040170 | 2003.1.1.45 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › UDPG_MGDP_dh_N | 0.58 | 41.0 | 3.88e-01 | 72.7% | 96.8% |
| 4521590 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.58 | 46.0 | 3.78e-01 | 85.1% | 82.8% |
| 5018421 | 300.1.1.18 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › FilR1_middle | 0.56 | 33.0 | 3.24e-01 | 83.8% | 52.4% |
| 4378000 | 2002.1.1.290 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PF31264 | 0.55 | 41.0 | 3.81e-01 | 77.3% | 90.4% |
| 4962099 | 2002.1.1.174 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MR_MLE_C | 0.55 | 42.0 | 3.44e-01 | 78.6% | 68.7% |
| 3954289 | 2002.1.1.221 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DUF5131 | 0.55 | 41.0 | 3.58e-01 | 79.2% | 92.1% |
| 2771289 | 7570.1.1.1 ↗ | a/b three-layered sandwiches › MurD-like peptide ligases, peptide-binding domain › MurD-like peptide ligases, peptide-binding domain › MurD-like peptide ligases, peptide-binding domain › Mur_ligase_C | 0.54 | 41.0 | 4.12e-01 | 77.9% | 89.6% |
| 432902 | 2002.1.1.174 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MR_MLE_C | 0.54 | 41.0 | 3.52e-01 | 78.6% | 69.4% |
| 4147673 | 2002.1.1.174 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MR_MLE_C | 0.54 | 40.0 | 3.47e-01 | 77.9% | 78.7% |
| 4193972 | 2002.1.1.66 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DHquinase_I | 0.54 | 43.0 | 3.74e-01 | 83.8% | 87.8% |
| 3189147 | 7516.1.1.108 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_transf_17 | 0.54 | 43.0 | 3.30e-01 | 84.4% | 66.9% |
| None | — | 0.54 | 41.0 | 3.02e-01 | 79.9% | 90.8% | |
| 3616055 | 2002.1.1.290 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PF31264 | 0.54 | 40.0 | 3.59e-01 | 77.9% | 87.3% |
| 3485784 | 2485.1.1.1 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin | 0.54 | 30.0 | 3.41e-01 | 85.1% | 70.0% |
| 5078481 | 246.2.1.9 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos_2 | 0.52 | 40.0 | 3.50e-01 | 80.5% | 95.4% |
| 3265915 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.52 | 41.0 | 3.28e-01 | 84.4% | 82.7% |
| 5043208 | 2006.1.4.10 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_4 | 0.52 | 36.0 | 3.82e-01 | 79.9% | 80.0% |
| 3718571 | 2485.1.1.1 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin | 0.52 | 29.0 | 3.38e-01 | 79.9% | 75.5% |
| 5019934 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.52 | 42.0 | 3.28e-01 | 89.0% | 71.5% |
| 4984575 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.51 | 43.0 | 3.55e-01 | 92.9% | 81.0% |
| 3263813 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.51 | 35.0 | 3.83e-01 | 77.9% | 83.1% |
D2
medium
residues 32-148_190-256_271-287
Domain cluster:
representative
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00920.28 best | ILVD_EDD_N | 175.8 | 1.80e-51 | 58.2% | 36.8% |
| PF00920.28 | ILVD_EDD_N | 86.4 | 3.00e-24 | 42.8% | 31.4% |
CATH (59)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3lzdA03 | 3.40.50.11860 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Diphthamide synthesis DPH1/DPH2 domain 3 | 0.79 | 35.0 | 4.90e-01 | 82.6% | 83.3% |
| 3qk7A01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.77 | 50.0 | 5.95e-01 | 89.1% | 94.2% |
| 3bblA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.77 | 50.0 | 6.02e-01 | 88.6% | 95.7% |
| 6xehA01 | 3.40.50.11230 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.76 | 43.0 | 5.70e-01 | 82.1% | 100.0% |
| 3hcwA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.76 | 50.0 | 5.90e-01 | 89.1% | 94.3% |
| 4rweA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.76 | 47.0 | 5.86e-01 | 89.1% | 97.7% |
| 4ry8A01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.76 | 48.0 | 5.58e-01 | 89.1% | 86.5% |
| 4jgiB02 | 3.40.50.280 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cobalamin-binding domain | 0.75 | 46.0 | 5.79e-01 | 85.1% | 98.4% |
| 4ru1A01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.74 | 49.0 | 5.81e-01 | 89.1% | 95.0% |
| 3vzbB01 | 3.40.50.10330 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Probable inorganic polyphosphate/atp-NAD kinase; domain 1 | 0.73 | 49.0 | 5.79e-01 | 89.6% | 96.5% |
| 4y9tA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.71 | 49.0 | 5.70e-01 | 91.5% | 96.6% |
| 3ojcA01 | 3.40.50.1860 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.70 | 42.0 | 5.32e-01 | 84.1% | 100.0% |
| 1bmtA02 | 3.40.50.280 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cobalamin-binding domain | 0.68 | 49.0 | 5.44e-01 | 91.5% | 91.8% |
| 1o6cB01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.66 | 54.0 | 5.31e-01 | 85.6% | 95.4% |
| 4nesA01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.66 | 53.0 | 5.34e-01 | 82.6% | 100.0% |
| 2bisA01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.65 | 52.0 | 4.91e-01 | 84.1% | 96.3% |
| 3k1yA00 | 3.40.50.360 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain | 0.65 | 53.0 | 5.56e-01 | 84.6% | 100.0% |
| 2vptA00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.65 | 53.0 | 5.39e-01 | 85.6% | 100.0% |
| 4hwgA01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.65 | 55.0 | 5.45e-01 | 89.1% | 99.5% |
| 3wxmB02 | 3.30.420.60 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 | 0.65 | 40.0 | 4.96e-01 | 83.6% | 99.2% |
| 3bjrA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.65 | 52.0 | 4.90e-01 | 84.1% | 90.6% |
| 5bq3A02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.64 | 43.0 | 4.79e-01 | 92.5% | 85.8% |
| 4gx0B04 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.64 | 39.0 | 4.75e-01 | 76.1% | 92.4% |
| 2p6pB01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.64 | 53.0 | 5.23e-01 | 86.1% | 99.5% |
| 3h5lA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.63 | 45.0 | 4.91e-01 | 88.1% | 87.3% |
| 3vueA01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.63 | 51.0 | 4.54e-01 | 84.1% | 100.0% |
| 4pg4A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.63 | 48.0 | 5.32e-01 | 89.1% | 98.1% |
| 3c48A01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.63 | 56.0 | 5.45e-01 | 95.0% | 100.0% |
| 4hdrB02 | 3.40.50.10210 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase (CobT), large domain | 0.63 | 51.0 | 4.68e-01 | 84.6% | 100.0% |
| 3m1rB01 | 3.40.800.10 | Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Ureohydrolase domain | 0.62 | 51.0 | 4.43e-01 | 85.1% | 96.3% |
| 3fcsB03 | 3.40.50.410 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain | 0.62 | 49.0 | 4.63e-01 | 83.6% | 100.0% |
| 4ldpA01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.61 | 50.0 | 4.98e-01 | 85.6% | 100.0% |
| 5ybwA01 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.61 | 45.0 | 4.29e-01 | 73.1% | 79.7% |
| 3wadB01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.61 | 49.0 | 4.71e-01 | 84.6% | 100.0% |
| 2yjnA01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.61 | 50.0 | 4.67e-01 | 86.1% | 100.0% |
| 3tx6A01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.60 | 52.0 | 5.20e-01 | 91.5% | 96.1% |
| 1ihcA00 | 3.40.980.10 | Alpha Beta › 3-Layer(aba) Sandwich › Molybdenum Cofactor Biosythetic Enzyme; Chain A › MoaB/Mog-like domain | 0.60 | 45.0 | 4.92e-01 | 86.6% | 93.5% |
| 3e4cB00 | 3.40.50.1460 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.59 | 50.0 | 4.52e-01 | 89.1% | 84.0% |
| 3p0rA00 | 3.40.50.360 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain | 0.59 | 46.0 | 4.61e-01 | 81.6% | 100.0% |
| 1t1jA00 | 3.40.50.10400 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Hypothetical protein PA1492 | 0.58 | 35.0 | 4.39e-01 | 83.1% | 99.2% |
| 2we8A02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.58 | 44.0 | 4.91e-01 | 84.1% | 100.0% |
| 2hpvA00 | 3.40.50.360 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain | 0.58 | 45.0 | 4.54e-01 | 81.6% | 100.0% |
| 4zdjA02 | 3.40.50.880 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain | 0.58 | 48.0 | 4.50e-01 | 87.1% | 99.2% |
| 2qipA00 | 3.40.50.1010 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease | 0.58 | 43.0 | 4.77e-01 | 77.1% | 98.8% |
| 6vloD01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.57 | 48.0 | 4.77e-01 | 88.1% | 89.5% |
| 3kegA00 | 3.40.50.360 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain | 0.57 | 45.0 | 4.61e-01 | 81.1% | 100.0% |
| 4e94A01 | 3.40.50.10740 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Murein tetrapeptidase LD-carboxypeptidase, N-terminal domain | 0.57 | 43.0 | 4.76e-01 | 85.1% | 100.0% |
| 6gs2C01 | 3.40.50.880 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain | 0.56 | 46.0 | 4.32e-01 | 85.1% | 88.0% |
| 3er6A00 | 3.40.50.880 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain | 0.56 | 45.0 | 4.59e-01 | 82.6% | 93.2% |
| 2fp3A01 | 3.40.50.1460 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.55 | 46.0 | 4.45e-01 | 89.1% | 90.3% |
| 4m9rB00 | 3.40.50.1460 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.54 | 46.0 | 4.48e-01 | 90.0% | 80.7% |
| 2b30A01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.54 | 43.0 | 4.60e-01 | 82.1% | 94.9% |
| 2d1cA01 | 3.40.718.10 | Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase | 0.54 | 46.0 | 3.70e-01 | 90.0% | 94.0% |
| 2ya0A02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.54 | 43.0 | 3.29e-01 | 83.6% | 93.8% |
| 4c5yA02 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.53 | 43.0 | 3.67e-01 | 85.1% | 99.7% |
| 4mwaA00 | 3.20.20.20 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Dihydropteroate synthase-like | 0.52 | 41.0 | 3.82e-01 | 83.1% | 96.2% |
| 3n05A02 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.51 | 37.0 | 3.85e-01 | 77.6% | 78.3% |
| 2r8cA02 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.51 | 41.0 | 3.60e-01 | 85.1% | 100.0% |
| 3b5iB01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.50 | 42.0 | 3.97e-01 | 89.1% | 90.2% |
ECOD (89)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4885999 | 2487.1.1.4 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › ILVD_EDD | 1.00 | 99.0 | 7.65e-01 | 100.0% | 69.2% |
| 4886012 | 2007.1.20.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Dehydratase-like › ILVD_EDD | 1.00 | 98.0 | 7.29e-01 | 100.0% | 62.1% |
| 4042375 | 4303.1.1.1 ↗ | alpha arrays › lvD/EDD N-terminal domain-like › lvD/EDD N-terminal domain-like › lvD/EDD N-terminal domain-like › ILVD_EDD | 0.99 | 98.0 | 7.66e-01 | 100.0% | 70.4% |
| 4934862 | 2007.1.20.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Dehydratase-like › ILVD_EDD | 0.99 | 98.0 | 7.58e-01 | 100.0% | 68.0% |
| 3974707 | 4303.1.1.0 ↗ | alpha arrays › lvD/EDD N-terminal domain-like › lvD/EDD N-terminal domain-like › lvD/EDD N-terminal domain-like | 0.99 | 98.0 | 7.36e-01 | 100.0% | 63.7% |
| 4399711 | 4303.1.1.1 ↗ | alpha arrays › lvD/EDD N-terminal domain-like › lvD/EDD N-terminal domain-like › lvD/EDD N-terminal domain-like › ILVD_EDD | 0.99 | 98.0 | 7.25e-01 | 100.0% | 64.2% |
| 4389572 | 4303.1.1.1 ↗ | alpha arrays › lvD/EDD N-terminal domain-like › lvD/EDD N-terminal domain-like › lvD/EDD N-terminal domain-like › ILVD_EDD | 0.99 | 98.0 | 7.41e-01 | 100.0% | 60.8% |
| 3205681 | 4303.1.1.1 ↗ | alpha arrays › lvD/EDD N-terminal domain-like › lvD/EDD N-terminal domain-like › lvD/EDD N-terminal domain-like › ILVD_EDD | 0.99 | 98.0 | 7.31e-01 | 100.0% | 64.8% |
| 4599955 | 4303.1.1.0 ↗ | alpha arrays › lvD/EDD N-terminal domain-like › lvD/EDD N-terminal domain-like › lvD/EDD N-terminal domain-like | 0.99 | 97.0 | 7.58e-01 | 100.0% | 68.9% |
| 5064752 | 4303.1.1.1 ↗ | alpha arrays › lvD/EDD N-terminal domain-like › lvD/EDD N-terminal domain-like › lvD/EDD N-terminal domain-like › ILVD_EDD | 0.99 | 97.0 | 7.54e-01 | 100.0% | 69.6% |
| 4176536 | 4303.1.1.1 ↗ | alpha arrays › lvD/EDD N-terminal domain-like › lvD/EDD N-terminal domain-like › lvD/EDD N-terminal domain-like › ILVD_EDD | 0.99 | 97.0 | 7.50e-01 | 100.0% | 67.1% |
| 3976932 | 4303.1.1.1 ↗ | alpha arrays › lvD/EDD N-terminal domain-like › lvD/EDD N-terminal domain-like › lvD/EDD N-terminal domain-like › ILVD_EDD | 0.99 | 97.0 | 7.49e-01 | 100.0% | 66.1% |
| 4256356 | 4303.1.1.1 ↗ | alpha arrays › lvD/EDD N-terminal domain-like › lvD/EDD N-terminal domain-like › lvD/EDD N-terminal domain-like › ILVD_EDD | 0.98 | 97.0 | 7.49e-01 | 100.0% | 68.0% |
| 4008873 | 4303.1.1.1 ↗ | alpha arrays › lvD/EDD N-terminal domain-like › lvD/EDD N-terminal domain-like › lvD/EDD N-terminal domain-like › ILVD_EDD | 0.97 | 95.0 | 7.08e-01 | 100.0% | 62.1% |
| 3509643 | 4303.1.1.1 ↗ | alpha arrays › lvD/EDD N-terminal domain-like › lvD/EDD N-terminal domain-like › lvD/EDD N-terminal domain-like › ILVD_EDD | 0.97 | 95.0 | 7.13e-01 | 100.0% | 61.0% |
| 3692091 | 4303.1.1.1 ↗ | alpha arrays › lvD/EDD N-terminal domain-like › lvD/EDD N-terminal domain-like › lvD/EDD N-terminal domain-like › ILVD_EDD | 0.95 | 94.0 | 7.23e-01 | 100.0% | 66.8% |
| 4514151 | 4303.1.1.1 ↗ | alpha arrays › lvD/EDD N-terminal domain-like › lvD/EDD N-terminal domain-like › lvD/EDD N-terminal domain-like › ILVD_EDD | 0.95 | 94.0 | 7.44e-01 | 100.0% | 66.3% |
| 2990673 | 4303.1.1.0 ↗ | alpha arrays › lvD/EDD N-terminal domain-like › lvD/EDD N-terminal domain-like › lvD/EDD N-terminal domain-like | 0.95 | 93.0 | 7.28e-01 | 100.0% | 68.1% |
| 4561047 | 4303.1.1.1 ↗ | alpha arrays › lvD/EDD N-terminal domain-like › lvD/EDD N-terminal domain-like › lvD/EDD N-terminal domain-like › ILVD_EDD | 0.95 | 93.0 | 7.19e-01 | 100.0% | 66.1% |
| 4882232 | 2007.1.20.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Dehydratase-like › ILVD_EDD | 0.95 | 93.0 | 7.14e-01 | 100.0% | 64.9% |
| 3195172 | 4303.1.1.1 ↗ | alpha arrays › lvD/EDD N-terminal domain-like › lvD/EDD N-terminal domain-like › lvD/EDD N-terminal domain-like › ILVD_EDD | 0.94 | 92.0 | 7.05e-01 | 100.0% | 64.3% |
| 4136512 | 2007.1.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I | 0.79 | 48.0 | 5.88e-01 | 89.6% | 91.1% |
| 4074764 | 2007.1.3.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like | 0.75 | 47.0 | 5.88e-01 | 86.6% | 100.0% |
| 4643270 | 2007.1.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I | 0.75 | 47.0 | 5.72e-01 | 89.1% | 96.2% |
| 3059315 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.74 | 51.0 | 5.99e-01 | 89.1% | 100.0% |
| 4948749 | 7512.1.1.0 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase | 0.72 | 44.0 | 5.57e-01 | 84.1% | 100.0% |
| 3958463 | 7579.1.1.11 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Cutinase | 0.72 | 56.0 | 5.78e-01 | 81.6% | 100.0% |
| 5047030 | 7512.1.1.0 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase | 0.71 | 59.0 | 6.00e-01 | 86.1% | 99.0% |
| 5079738 | 7512.1.1.0 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase | 0.67 | 55.0 | 5.45e-01 | 86.6% | 96.7% |
| 4438574 | 7512.1.1.10 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_28 | 0.67 | 57.0 | 5.85e-01 | 88.1% | 98.4% |
| 4995754 | 7563.1.1.0 ↗ | a/b three-layered sandwiches › MCP/YpsA-related › MCP/YpsA-related › MCP/YpsA-related | 0.67 | 33.0 | 3.94e-01 | 80.1% | 66.4% |
| 3785575 | 7590.1.1.0 ↗ | a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs | 0.67 | 48.0 | 4.91e-01 | 86.1% | 75.4% |
| 3177710 | 7512.1.1.54 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Alg14 | 0.67 | 51.0 | 4.96e-01 | 79.1% | 82.2% |
| 4072215 | 7512.1.1.10 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_28 | 0.67 | 53.0 | 5.71e-01 | 83.1% | 100.0% |
| 3300280 | 7512.1.1.0 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase | 0.66 | 51.0 | 4.93e-01 | 79.6% | 95.6% |
| 5045031 | 7512.1.1.30 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 | 0.66 | 53.0 | 5.02e-01 | 83.6% | 100.0% |
| 3527701 | 7512.1.1.52 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › PIGA | 0.65 | 60.0 | 5.36e-01 | 99.0% | 82.9% |
| 4171839 | 7512.1.1.52 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › PIGA | 0.65 | 60.0 | 5.54e-01 | 99.0% | 92.9% |
| 4971636 | 7539.1.1.1 ↗ | a/b three-layered sandwiches › Creatininase › Creatininase › Creatininase › Creatininase | 0.65 | 54.0 | 5.02e-01 | 86.1% | 93.2% |
| 4634374 | 2484.1.1.38 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › eRF1_2 | 0.65 | 40.0 | 5.00e-01 | 82.6% | 100.0% |
| 375270 | 2007.2.1.3 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Flavoproteins › FMN_red | 0.65 | 52.0 | 5.52e-01 | 83.6% | 100.0% |
| 167873 | 2007.5.1.8 ↗ | a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL_2 | 0.65 | 53.0 | 5.39e-01 | 85.6% | 100.0% |
| 5041200 | 7512.1.1.30 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 | 0.65 | 54.0 | 5.36e-01 | 87.1% | 96.1% |
| 4655073 | 7512.1.1.10 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_28 | 0.65 | 49.0 | 5.42e-01 | 79.1% | 100.0% |
| 5038649 | 7512.1.1.30 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 | 0.65 | 53.0 | 5.33e-01 | 86.1% | 98.5% |
| 4274212 | 7512.1.1.10 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_28 | 0.65 | 49.0 | 5.35e-01 | 79.1% | 100.0% |
| 4976031 | 7539.1.1.1 ↗ | a/b three-layered sandwiches › Creatininase › Creatininase › Creatininase › Creatininase | 0.64 | 54.0 | 5.02e-01 | 87.1% | 92.6% |
| 4462823 | 7512.1.1.10 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_28 | 0.64 | 47.0 | 5.32e-01 | 76.6% | 100.0% |
| 4974388 | 7512.1.1.30 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 | 0.64 | 53.0 | 5.28e-01 | 86.6% | 99.5% |
| 4086527 | 7512.1.1.0 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase | 0.64 | 49.0 | 4.41e-01 | 78.6% | 100.0% |
| 3290834 | 2007.2.1.3 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Flavoproteins › FMN_red | 0.63 | 53.0 | 5.33e-01 | 88.1% | 99.5% |
| 4338740 | 7512.1.1.10 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_28 | 0.63 | 48.0 | 5.36e-01 | 80.1% | 98.8% |
| 4957313 | 7512.1.1.30 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 | 0.63 | 53.0 | 5.12e-01 | 87.6% | 94.1% |
| 5046480 | 2007.1.5.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › ATC-like › CCG | 0.63 | 40.0 | 4.35e-01 | 84.1% | 75.8% |
| 5055792 | 7512.1.1.30 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 | 0.63 | 53.0 | 4.98e-01 | 88.6% | 88.7% |
| 4974867 | 7512.1.1.30 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 | 0.63 | 51.0 | 5.23e-01 | 84.6% | 100.0% |
| 3954691 | 7565.1.1.1 ↗ | a/b three-layered sandwiches › Resolvase-like › Resolvase-like › Resolvase-like › Resolvase | 0.62 | 41.0 | 4.82e-01 | 94.0% | 97.0% |
| 4998977 | 7512.1.1.30 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 | 0.62 | 51.0 | 4.94e-01 | 85.6% | 100.0% |
| 4974680 | 7512.1.1.30 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 | 0.62 | 52.0 | 5.24e-01 | 88.1% | 96.5% |
| 5079134 | 7512.1.1.0 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase | 0.62 | 47.0 | 3.89e-01 | 78.6% | 73.6% |
| 4972412 | 7512.1.1.30 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 | 0.62 | 46.0 | 4.74e-01 | 77.6% | 100.0% |
| 3594638 | 7512.1.1.0 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase | 0.61 | 57.0 | 5.49e-01 | 100.0% | 100.0% |
| 5014953 | 7512.1.1.30 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 | 0.61 | 47.0 | 5.06e-01 | 78.6% | 100.0% |
| 4009865 | 7512.1.1.31 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_trans_4_4 | 0.61 | 48.0 | 4.73e-01 | 81.6% | 100.0% |
| 5057769 | 7512.1.1.30 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 | 0.61 | 50.0 | 5.19e-01 | 86.1% | 100.0% |
| 4971689 | 7512.1.1.30 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 | 0.60 | 49.0 | 5.07e-01 | 85.6% | 100.0% |
| 4983923 | 2007.1.2.13 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_6 | 0.60 | 45.0 | 4.83e-01 | 85.6% | 90.2% |
| 3381753 | 2007.1.2.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor | 0.60 | 51.0 | 4.93e-01 | 89.6% | 81.8% |
| 4963595 | 7512.1.1.31 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_trans_4_4 | 0.60 | 46.0 | 5.10e-01 | 79.1% | 100.0% |
| 4143377 | 7512.1.1.16 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Capsule_synth | 0.60 | 36.0 | 4.31e-01 | 92.0% | 88.1% |
| 5065619 | 2007.1.3.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › B12-binding | 0.59 | 51.0 | 4.97e-01 | 91.5% | 84.9% |
| 5047722 | 7512.1.1.30 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 | 0.59 | 48.0 | 4.96e-01 | 84.6% | 100.0% |
| 3382559 | 7512.1.1.52 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › PIGA | 0.59 | 54.0 | 5.21e-01 | 99.0% | 90.0% |
| 5064101 | 2007.1.20.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Dehydratase-like › ILVD_EDD | 0.59 | 53.0 | 5.12e-01 | 99.5% | 84.8% |
| 5033063 | 7512.1.1.0 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase | 0.59 | 48.0 | 4.24e-01 | 85.1% | 84.6% |
| 5003192 | 7512.1.1.0 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase | 0.58 | 46.0 | 4.94e-01 | 82.1% | 99.4% |
| 3723862 | 7575.1.1.1 ↗ | a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like › Peptidase_C14 | 0.58 | 49.0 | 4.39e-01 | 90.0% | 95.7% |
| 4948952 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.57 | 38.0 | 3.47e-01 | 87.6% | 48.7% |
| 4976814 | 2003.1.9.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins | 0.57 | 49.0 | 4.51e-01 | 89.1% | 91.2% |
| 2557291 | 7575.1.1.4 ↗ | a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like › Peptidase_C11 | 0.56 | 51.0 | 4.21e-01 | 97.0% | 98.3% |
| 3957606 | 7579.1.1.84 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › PE-PPE | 0.56 | 49.0 | 4.59e-01 | 93.5% | 96.8% |
| 3964017 | 7512.1.1.0 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase | 0.56 | 43.0 | 4.40e-01 | 80.1% | 99.5% |
| 3386860 | 7512.1.1.16 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Capsule_synth | 0.53 | 41.0 | 3.29e-01 | 80.1% | 97.9% |
| 4517368 | 2498.1.1.35 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M54 | 0.53 | 43.0 | 4.46e-01 | 85.6% | 100.0% |
| 1123736 | 2484.1.1.41 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › AnmK | 0.53 | 44.0 | 3.77e-01 | 88.6% | 97.5% |
| 4340814 | 2002.1.1.132 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › GcpE | 0.53 | 40.0 | 3.66e-01 | 79.6% | 87.6% |
| 4522690 | 2002.1.1.132 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › GcpE | 0.52 | 39.0 | 3.64e-01 | 77.6% | 91.5% |
| 4441604 | 7512.1.1.16 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Capsule_synth | 0.52 | 41.0 | 3.25e-01 | 81.1% | 97.5% |
| 3282046 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.50 | 41.0 | 3.41e-01 | 84.6% | 81.7% |
D3
medium
residues 150-185
Domain cluster:
representative
CATH (34)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3n2oA03 | 1.20.58.930 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.84 | 73.0 | 5.26e-01 | 97.2% | 66.7% |
| 4mt4A00 | 1.20.1600.10 | Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) | 0.82 | 64.0 | 3.53e-01 | 100.0% | 6.6% |
| 5azsC01 | 1.20.1600.10 | Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) | 0.82 | 64.0 | 3.62e-01 | 100.0% | 8.7% |
| 2nn4A00 | 1.10.287.760 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YqgQ-like | 0.80 | 65.0 | 5.46e-01 | 91.7% | 85.5% |
| 1iuqA01 | 1.10.1200.50 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Glycerol-3-phosphate acyltransferase, alpha helical bundle, N-terminal | 0.79 | 56.0 | 4.35e-01 | 75.0% | 36.8% |
| 5c8aA01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.78 | 69.0 | 5.33e-01 | 100.0% | 76.9% |
| 4ezeB00 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.76 | 53.0 | 3.14e-01 | 75.0% | 9.7% |
| 2rldA00 | 1.20.1440.60 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence | 0.75 | 63.0 | 4.47e-01 | 100.0% | 75.4% |
| 4kb2A01 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.72 | 58.0 | 4.16e-01 | 94.4% | 74.3% |
| 7xcnM01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.71 | 60.0 | 4.77e-01 | 100.0% | 78.2% |
| 4oydB00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.70 | 57.0 | 4.01e-01 | 94.4% | 75.2% |
| 2fe1A00 | 3.40.50.1010 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease | 0.70 | 51.0 | 3.59e-01 | 83.3% | 41.5% |
| 3bulA01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.70 | 60.0 | 4.59e-01 | 100.0% | 70.1% |
| 6hrdA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.69 | 58.0 | 3.72e-01 | 100.0% | 26.7% |
| 3eyeA00 | 3.40.35.10 | Alpha Beta › 3-Layer(aba) Sandwich › Fructose Permease › Phosphotransferase system, sorbose subfamily IIB component | 0.67 | 50.0 | 3.39e-01 | 88.9% | 26.8% |
| 3h5qA01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.67 | 50.0 | 4.20e-01 | 88.9% | 58.6% |
| 2lwxA00 | 1.10.8.840 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ribosome-associated complex head domain | 0.67 | 52.0 | 4.13e-01 | 97.2% | 76.1% |
| 1yxrA01 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.65 | 48.0 | 3.98e-01 | 83.3% | 71.6% |
| 5m9dA00 | 1.25.40.90 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.65 | 50.0 | 3.54e-01 | 94.4% | 33.3% |
| 6dv2G02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.65 | 52.0 | 3.42e-01 | 100.0% | 27.7% |
| 2q01A01 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.64 | 53.0 | 3.07e-01 | 100.0% | 85.4% |
| 2au5A00 | 1.20.120.590 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › EF2947-like | 0.63 | 45.0 | 3.18e-01 | 77.8% | 24.8% |
| 3mggA02 | 6.10.140.1580 | Special › Helix non-globular › Helix Hairpins › | 0.63 | 49.0 | 3.90e-01 | 97.2% | 77.5% |
| 5o6uB00 | 3.30.70.2540 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › CRISPR-associated endoribonuclease Cas6/Csy4 | 0.62 | 42.0 | 2.77e-01 | 75.0% | 14.8% |
| 1zvwA01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.61 | 46.0 | 4.01e-01 | 94.4% | 63.6% |
| 1xrtA02 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.61 | 46.0 | 2.92e-01 | 100.0% | 94.2% |
| 1vquA01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.60 | 48.0 | 4.12e-01 | 97.2% | 61.2% |
| 3crvA02 | 1.10.275.30 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › | 0.58 | 45.0 | 3.40e-01 | 97.2% | 70.4% |
| 2elcA01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.57 | 45.0 | 3.89e-01 | 97.2% | 55.2% |
| 4muoA01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.57 | 45.0 | 3.77e-01 | 97.2% | 69.4% |
| 4biuE01 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.56 | 43.0 | 3.37e-01 | 100.0% | 49.0% |
| 3zdmB00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.56 | 41.0 | 3.78e-01 | 80.6% | 72.0% |
| 4aktB00 | 3.40.50.200 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain | 0.55 | 43.0 | 2.56e-01 | 94.4% | 40.6% |
| 4ihuA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.55 | 44.0 | 2.83e-01 | 94.4% | 35.3% |
ECOD (48)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4885999 | 2487.1.1.4 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › ILVD_EDD | 0.98 | 90.0 | 4.99e-01 | 100.0% | 9.7% |
| 4934862 | 2007.1.20.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Dehydratase-like › ILVD_EDD | 0.94 | 82.0 | 4.59e-01 | 100.0% | 9.3% |
| 4996117 | 601.5.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Colicin D immunity protein › Colicin D immunity protein | 0.92 | 65.0 | 4.97e-01 | 75.0% | 37.3% |
| 3509643 | 4303.1.1.1 ↗ | alpha arrays › lvD/EDD N-terminal domain-like › lvD/EDD N-terminal domain-like › lvD/EDD N-terminal domain-like › ILVD_EDD | 0.88 | 66.0 | 3.66e-01 | 100.0% | 6.9% |
| 3973770 | 604.34.1.1 ↗ | alpha bundles › Spectrin repeat-like › Helical bundle domain in arginine decarboxylase › Helical bundle domain in arginine decarboxylase › Arg_decarb_HB | 0.87 | 72.0 | 5.22e-01 | 91.7% | 62.1% |
| 4961550 | 3156.1.1.8 ↗ | beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related › Cu-oxidase_2 | 0.87 | 73.0 | 4.51e-01 | 91.7% | 71.4% |
| 4567001 | 604.34.1.1 ↗ | alpha bundles › Spectrin repeat-like › Helical bundle domain in arginine decarboxylase › Helical bundle domain in arginine decarboxylase › Arg_decarb_HB | 0.86 | 71.0 | 5.17e-01 | 91.7% | 60.0% |
| 4416227 | 604.34.1.1 ↗ | alpha bundles › Spectrin repeat-like › Helical bundle domain in arginine decarboxylase › Helical bundle domain in arginine decarboxylase › Arg_decarb_HB | 0.86 | 73.0 | 5.20e-01 | 94.4% | 62.0% |
| 4095580 | 604.34.1.1 ↗ | alpha bundles › Spectrin repeat-like › Helical bundle domain in arginine decarboxylase › Helical bundle domain in arginine decarboxylase › Arg_decarb_HB | 0.85 | 70.0 | 5.09e-01 | 91.7% | 62.1% |
| 4306757 | 604.34.1.1 ↗ | alpha bundles › Spectrin repeat-like › Helical bundle domain in arginine decarboxylase › Helical bundle domain in arginine decarboxylase › Arg_decarb_HB | 0.82 | 71.0 | 5.02e-01 | 97.2% | 65.7% |
| 3915619 | 7015.1.1.1 ↗ | alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › DHHC | 0.82 | 72.0 | 4.28e-01 | 100.0% | 19.6% |
| 4102269 | 604.34.1.1 ↗ | alpha bundles › Spectrin repeat-like › Helical bundle domain in arginine decarboxylase › Helical bundle domain in arginine decarboxylase › Arg_decarb_HB | 0.81 | 69.0 | 5.05e-01 | 97.2% | 63.2% |
| 5073662 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.80 | 69.0 | 4.24e-01 | 100.0% | 68.1% |
| 3974625 | 5086.1.1.84 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_MFP_RND | 0.79 | 61.0 | 4.91e-01 | 100.0% | 44.3% |
| 4944710 | 604.5.1.82 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › TrkA_C | 0.78 | 67.0 | 4.82e-01 | 94.4% | 73.7% |
| 1688882 | 4995.1.1.1 ↗ | alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 | 0.78 | 68.0 | 5.16e-01 | 100.0% | 69.8% |
| 3926356 | 5081.1.1.4 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › DUF1751 | 0.78 | 64.0 | 3.89e-01 | 97.2% | 40.4% |
| 3724547 | 4317.1.1.1 ↗ | a+b duplicates or obligate multimers › YdfO-like › YdfO-like › YdfO-like › DUF1398 | 0.77 | 57.0 | 4.88e-01 | 100.0% | 50.0% |
| 3953651 | 4317.1.1.1 ↗ | a+b duplicates or obligate multimers › YdfO-like › YdfO-like › YdfO-like › DUF1398 | 0.76 | 57.0 | 4.76e-01 | 100.0% | 47.6% |
| 3279151 | 4995.1.1.1 ↗ | alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 | 0.76 | 65.0 | 4.90e-01 | 100.0% | 67.8% |
| 4997097 | 4995.1.1.1 ↗ | alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 | 0.76 | 67.0 | 5.27e-01 | 100.0% | 80.0% |
| 5003027 | 4995.1.1.1 ↗ | alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 | 0.76 | 65.0 | 4.87e-01 | 100.0% | 67.8% |
| 5076363 | 4995.1.1.1 ↗ | alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 | 0.76 | 65.0 | 4.97e-01 | 100.0% | 70.6% |
| 4983557 | 4995.1.1.1 ↗ | alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 | 0.75 | 66.0 | 5.18e-01 | 100.0% | 81.3% |
| 3988856 | 4146.1.1.1 ↗ | alpha bundles › YqgQ-like › YqgQ-like › YqgQ-like › YqgQ-like | 0.75 | 64.0 | 5.11e-01 | 100.0% | 68.9% |
| 2889550 | 4995.1.1.0 ↗ | alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like | 0.75 | 64.0 | 4.93e-01 | 100.0% | 72.6% |
| 4927448 | 4995.1.1.1 ↗ | alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 | 0.74 | 63.0 | 4.91e-01 | 100.0% | 76.2% |
| 5050014 | 4995.1.1.1 ↗ | alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 | 0.74 | 64.0 | 4.96e-01 | 100.0% | 76.2% |
| 3434498 | 4.1.1.12 ↗ | beta barrels › SH3 › SH3 › SH3 › PWWP | 0.74 | 60.0 | 4.50e-01 | 100.0% | 87.0% |
| 4955947 | 4995.1.1.1 ↗ | alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 | 0.72 | 60.0 | 4.85e-01 | 100.0% | 81.3% |
| 3802965 | 109.4.1.1271 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, TPR_24 | 0.71 | 59.0 | 3.75e-01 | 100.0% | 30.0% |
| 3602465 | 2007.1.14.25 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › PF27317 | 0.71 | 54.0 | 4.07e-01 | 88.9% | 80.0% |
| 3810709 | 109.4.1.883 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 | 0.71 | 56.0 | 3.53e-01 | 91.7% | 29.0% |
| 4930916 | 4995.1.1.1 ↗ | alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 | 0.70 | 59.0 | 4.58e-01 | 100.0% | 71.8% |
| 3288811 | 2003.1.1.36 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › 3HCDH_N | 0.69 | 59.0 | 3.71e-01 | 100.0% | 25.5% |
| 4984734 | 601.7.1.2 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HEPN | 0.67 | 55.0 | 3.73e-01 | 100.0% | 32.4% |
| 3730681 | 633.10.1.23 ↗ | alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like › DUF4267 | 0.65 | 53.0 | 3.58e-01 | 100.0% | 82.0% |
| 4973789 | 298.2.1.1 ↗ | a+b two layers › FwdE/GAPDH domain-like › FwdE-like › FwdE-like › FmdE | 0.65 | 45.0 | 2.99e-01 | 75.0% | 16.4% |
| 3823250 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.65 | 54.0 | 3.52e-01 | 100.0% | 36.0% |
| 5061885 | 298.2.1.0 ↗ | a+b two layers › FwdE/GAPDH domain-like › FwdE-like › FwdE-like | 0.65 | 46.0 | 2.90e-01 | 77.8% | 13.3% |
| 5020018 | 298.2.1.1 ↗ | a+b two layers › FwdE/GAPDH domain-like › FwdE-like › FwdE-like › FmdE | 0.64 | 44.0 | 3.04e-01 | 72.2% | 22.2% |
| 2841796 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.64 | 44.0 | 4.34e-01 | 80.6% | 68.2% |
| 3168879 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.63 | 47.0 | 3.26e-01 | 88.9% | 27.6% |
| 4030724 | 4156.1.1.0 ↗ | alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like | 0.61 | 47.0 | 3.08e-01 | 94.4% | 86.4% |
| 3228081 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.61 | 49.0 | 4.47e-01 | 100.0% | 96.4% |
| 3958989 | 184.1.1.0 ↗ | alpha arrays › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N | 0.61 | 46.0 | 3.96e-01 | 94.4% | 60.0% |
| 4952057 | 298.2.1.1 ↗ | a+b two layers › FwdE/GAPDH domain-like › FwdE-like › FwdE-like › FmdE | 0.60 | 41.0 | 2.79e-01 | 75.0% | 19.4% |
| 3435472 | 376.1.4.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog | 0.58 | 48.0 | 4.13e-01 | 100.0% | 69.2% |
D4
medium
residues 257-270_288-379
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00920.28 best | ILVD_EDD_N | 68.0 | 1.20e-18 | 71.7% | 22.2% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4885999 | 2487.1.1.4 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › ILVD_EDD | 1.00 | 96.0 | 6.22e-01 | 98.1% | 32.7% |
| 5064752 | 4303.1.1.1 ↗ | alpha arrays › lvD/EDD N-terminal domain-like › lvD/EDD N-terminal domain-like › lvD/EDD N-terminal domain-like › ILVD_EDD | 0.94 | 90.0 | 5.85e-01 | 98.1% | 31.5% |
| 4934862 | 2007.1.20.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Dehydratase-like › ILVD_EDD | 0.94 | 88.0 | 5.76e-01 | 97.2% | 32.0% |
| 4399711 | 4303.1.1.1 ↗ | alpha arrays › lvD/EDD N-terminal domain-like › lvD/EDD N-terminal domain-like › lvD/EDD N-terminal domain-like › ILVD_EDD | 0.94 | 89.0 | 5.67e-01 | 99.1% | 37.0% |
| 3692091 | 4303.1.1.1 ↗ | alpha arrays › lvD/EDD N-terminal domain-like › lvD/EDD N-terminal domain-like › lvD/EDD N-terminal domain-like › ILVD_EDD | 0.93 | 89.0 | 5.80e-01 | 99.1% | 31.8% |
| 4389572 | 4303.1.1.1 ↗ | alpha arrays › lvD/EDD N-terminal domain-like › lvD/EDD N-terminal domain-like › lvD/EDD N-terminal domain-like › ILVD_EDD | 0.93 | 88.0 | 5.66e-01 | 98.1% | 40.3% |
| 4882232 | 2007.1.20.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Dehydratase-like › ILVD_EDD | 0.93 | 89.0 | 5.79e-01 | 100.0% | 31.4% |
| 4256356 | 4303.1.1.1 ↗ | alpha arrays › lvD/EDD N-terminal domain-like › lvD/EDD N-terminal domain-like › lvD/EDD N-terminal domain-like › ILVD_EDD | 0.93 | 86.0 | 5.63e-01 | 96.2% | 32.0% |
| 4976233 | 2007.1.20.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Dehydratase-like › ILVD_EDD | 0.92 | 89.0 | 7.51e-01 | 100.0% | 75.0% |
| 4599955 | 4303.1.1.0 ↗ | alpha arrays › lvD/EDD N-terminal domain-like › lvD/EDD N-terminal domain-like › lvD/EDD N-terminal domain-like | 0.92 | 86.0 | 5.63e-01 | 97.2% | 32.7% |
| 3509643 | 4303.1.1.1 ↗ | alpha arrays › lvD/EDD N-terminal domain-like › lvD/EDD N-terminal domain-like › lvD/EDD N-terminal domain-like › ILVD_EDD | 0.92 | 86.0 | 5.53e-01 | 98.1% | 31.9% |
| 4176536 | 4303.1.1.1 ↗ | alpha arrays › lvD/EDD N-terminal domain-like › lvD/EDD N-terminal domain-like › lvD/EDD N-terminal domain-like › ILVD_EDD | 0.92 | 85.0 | 5.53e-01 | 96.2% | 31.3% |
| 2990673 | 4303.1.1.0 ↗ | alpha arrays › lvD/EDD N-terminal domain-like › lvD/EDD N-terminal domain-like › lvD/EDD N-terminal domain-like | 0.91 | 84.0 | 5.54e-01 | 96.2% | 31.4% |
| 3205681 | 4303.1.1.1 ↗ | alpha arrays › lvD/EDD N-terminal domain-like › lvD/EDD N-terminal domain-like › lvD/EDD N-terminal domain-like › ILVD_EDD | 0.91 | 86.0 | 5.51e-01 | 99.1% | 29.6% |
| 4514151 | 4303.1.1.1 ↗ | alpha arrays › lvD/EDD N-terminal domain-like › lvD/EDD N-terminal domain-like › lvD/EDD N-terminal domain-like › ILVD_EDD | 0.91 | 84.0 | 5.58e-01 | 96.2% | 33.1% |
| 4042375 | 4303.1.1.1 ↗ | alpha arrays › lvD/EDD N-terminal domain-like › lvD/EDD N-terminal domain-like › lvD/EDD N-terminal domain-like › ILVD_EDD | 0.91 | 84.0 | 5.53e-01 | 96.2% | 31.5% |
| 4561047 | 4303.1.1.1 ↗ | alpha arrays › lvD/EDD N-terminal domain-like › lvD/EDD N-terminal domain-like › lvD/EDD N-terminal domain-like › ILVD_EDD | 0.89 | 85.0 | 5.57e-01 | 100.0% | 32.4% |
| 4008873 | 4303.1.1.1 ↗ | alpha arrays › lvD/EDD N-terminal domain-like › lvD/EDD N-terminal domain-like › lvD/EDD N-terminal domain-like › ILVD_EDD | 0.89 | 82.0 | 5.23e-01 | 96.2% | 32.6% |
| 3976932 | 4303.1.1.1 ↗ | alpha arrays › lvD/EDD N-terminal domain-like › lvD/EDD N-terminal domain-like › lvD/EDD N-terminal domain-like › ILVD_EDD | 0.89 | 82.0 | 5.37e-01 | 96.2% | 34.5% |