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MT889371.1__QOP64797.1__SEA_DELAGARZA_38__00038

Bact-Vir

MT889371.1__QOP64797.1__SEA_DELAGARZA_38__00038

Identity

Accession:
MT889371 ↗
Kingdom:
phage

Quality

82.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Microbacterium_phage_DelaGarza

TaxID: 2776865

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 23-90
PDB
Domain cluster: rep: NC_048761.1__YP_009845397.1__HWC17_gp16__00016__D33-90
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3mazA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.61 47.0 4.23e-01 92.6% 58.6%
1ksiA03 2.70.98.20 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain 0.61 45.0 2.76e-01 77.9% 73.1%
3n4fA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.60 54.0 4.39e-01 100.0% 83.5%
2jwpA00 2.60.120.430 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin 0.60 52.0 3.91e-01 100.0% 54.0%
1mkfA02 2.60.40.1340 Mainly Beta › Sandwich › Immunoglobulin-like › Chemokine-binding protein M3-like 0.59 50.0 3.83e-01 98.5% 45.3%
4qrlA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.57 45.0 3.88e-01 88.2% 72.7%
2el8A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.57 45.0 4.11e-01 91.2% 65.9%
2o62A02 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 46.0 3.79e-01 97.1% 92.7%
7px8A01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.55 37.0 2.59e-01 70.6% 42.5%
3oc5A02 2.60.40.3240 Mainly Beta › Sandwich › Immunoglobulin-like › Vibrio cholerae toxin co-regulated pilus biosynthesis protein F, C-terminal domain 0.55 40.0 3.26e-01 80.9% 78.0%
1tqzA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 47.0 3.93e-01 100.0% 94.3%
3cyjA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.54 45.0 3.73e-01 92.6% 95.9%
1foeC02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 45.0 3.54e-01 100.0% 73.3%
1z87A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 46.0 4.10e-01 98.5% 83.0%
2oqbA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 46.0 4.00e-01 100.0% 85.2%
3brnB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 43.0 3.43e-01 92.6% 67.6%
5fahA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.53 40.0 3.38e-01 82.4% 79.5%
1r0uA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 46.0 3.65e-01 98.5% 66.9%
7csoA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 45.0 3.75e-01 98.5% 78.0%
7t8tA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 44.0 3.65e-01 98.5% 79.4%
6h8oA00 3.40.1310.20 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.52 44.0 4.05e-01 100.0% 71.6%
1bakA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 44.0 3.78e-01 100.0% 68.9%
3tfmA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 43.0 3.90e-01 98.5% 84.8%
2eo6A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.51 40.0 3.53e-01 89.7% 69.4%
1btkA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 42.0 3.32e-01 98.5% 68.1%
2vifA01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.51 42.0 3.50e-01 94.1% 60.3%
2gumB03 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.50 44.0 3.71e-01 100.0% 90.9%
2djhA00 3.30.2310.30 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › Colicin E5 C-terminal ribonuclease domain (CRD) 0.50 40.0 3.66e-01 100.0% 65.6%
ECOD (47)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3404595 219.1.1.14 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Josephin 0.72 63.0 4.69e-01 100.0% 39.4%
4003825 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.67 51.0 3.14e-01 100.0% 14.1%
3244836 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 56.0 4.60e-01 100.0% 79.3%
3282528 3844.2.1.1 ↗ a+b two layers › hydrogenase expression protein-like › MybT EspG5 chaperone › MybT EspG5 chaperone › ESX-1_EspG 0.64 57.0 3.98e-01 100.0% 43.5%
3401352 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 55.0 4.59e-01 98.5% 91.7%
3238202 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.62 54.0 3.74e-01 100.0% 69.2%
2886668 807.1.1.1 ↗ a+b two layers › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › CpcD 0.62 40.0 4.44e-01 100.0% 88.2%
3863344 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 53.0 4.32e-01 98.5% 74.6%
3589333 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 52.0 4.67e-01 100.0% 69.5%
3514692 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.60 51.0 4.39e-01 98.5% 86.1%
3569462 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.60 52.0 4.18e-01 98.5% 70.7%
3627921 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.60 51.0 3.99e-01 98.5% 67.5%
3283544 3844.2.1.1 ↗ a+b two layers › hydrogenase expression protein-like › MybT EspG5 chaperone › MybT EspG5 chaperone › ESX-1_EspG 0.59 51.0 3.55e-01 100.0% 50.0%
4129309 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.59 51.0 4.08e-01 98.5% 70.7%
3216674 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.59 49.0 4.11e-01 92.6% 54.8%
4001931 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 50.0 4.08e-01 98.5% 68.1%
3217666 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.58 50.0 4.05e-01 100.0% 79.3%
1030893 11.26.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Viral chemokine binding protein m3 › Viral chemokine binding protein m3 › M3 0.58 50.0 3.81e-01 100.0% 45.1%
3885558 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.58 50.0 3.98e-01 98.5% 71.4%
3698484 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 48.0 3.85e-01 100.0% 78.7%
3274553 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.56 46.0 4.15e-01 98.5% 82.9%
5002155 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.56 43.0 3.81e-01 100.0% 57.0%
417536 11.1.1.87 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TcpF 0.55 41.0 3.39e-01 83.8% 84.3%
3409888 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.55 40.0 2.76e-01 80.9% 37.3%
3275991 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 46.0 3.75e-01 97.1% 67.4%
3186184 270.1.1.0 ↗ beta barrels › FMT C-terminal domain-like › FMT C-terminal domain-related › FMT C-terminal domain-related 0.54 47.0 3.60e-01 98.5% 49.4%
3888557 214.1.1.7 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2_1 0.54 43.0 3.60e-01 92.6% 53.1%
4197307 71.1.1.3 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.54 45.0 3.53e-01 100.0% 92.1%
3186506 4177.1.1.0 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.53 44.0 2.86e-01 98.5% 24.7%
4989205 219.1.1.13 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.53 47.0 3.49e-01 100.0% 38.3%
3743239 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 45.0 3.35e-01 98.5% 60.5%
872 9.9.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Hypothetical protein YwiB › Hypothetical protein YwiB › DUF1934 0.53 46.0 3.65e-01 98.5% 66.9%
4011110 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.53 44.0 3.68e-01 98.5% 69.2%
3198048 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 44.0 3.19e-01 98.5% 65.6%
3257612 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.53 40.0 3.04e-01 88.2% 81.5%
3707991 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 44.0 3.54e-01 100.0% 88.7%
3639931 220.1.1.91 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Spo7_2_N 0.52 43.0 3.32e-01 98.5% 54.3%
4216863 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 42.0 3.92e-01 89.7% 83.5%
3706520 2498.1.1.14 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M8 0.51 43.0 2.69e-01 100.0% 16.6%
4926801 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 36.0 2.99e-01 75.0% 77.8%
3900920 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.51 43.0 3.66e-01 100.0% 76.8%
3394537 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 43.0 3.77e-01 98.5% 86.4%
3621726 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.51 43.0 3.61e-01 98.5% 68.0%
5033672 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.51 42.0 3.18e-01 100.0% 50.8%
3939926 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.50 42.0 3.50e-01 100.0% 72.4%
3587958 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.50 39.0 3.62e-01 86.8% 73.3%
3555476 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.50 43.0 2.99e-01 98.5% 29.6%