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MT889371.1__QOP64809.1__SEA_DELAGARZA_50__00050
Bact-VirMT889371.1__QOP64809.1__SEA_DELAGARZA_50__00050
Identity
- Accession:
- MT889371 ↗
- Kingdom:
- phage
Quality
65.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 49-265
Domain cluster:
rep: IMGVR_UViG_3300020139_000054-3300020139-Ga0197143_10042646__D29-208
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF09588.17 best | YqaJ | 35.2 | 2.00e-08 | 71.4% | 100.0% |
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3syyA00 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.85 | 69.0 | 7.35e-01 | 95.9% | 93.3% |
| 3k93A00 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.76 | 67.0 | 6.68e-01 | 91.7% | 95.1% |
| 8d3mI01 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.76 | 58.0 | 5.94e-01 | 90.3% | 81.6% |
| 3sm4A00 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.74 | 69.0 | 6.86e-01 | 99.5% | 93.8% |
| 3l0aA00 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.70 | 66.0 | 6.13e-01 | 99.5% | 88.3% |
| 3h4rA00 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.66 | 58.0 | 5.88e-01 | 93.1% | 91.8% |
| 1azoA00 | 3.40.600.10 | Alpha Beta › 3-Layer(aba) Sandwich › ECO RV Endonuclease; Chain A › DNA mismatch repair MutH/Restriction endonuclease, type II | 0.57 | 34.0 | 3.44e-01 | 72.8% | 57.5% |
| 4hrvA00 | 3.40.50.10610 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ABC-type transport auxiliary lipoprotein component | 0.54 | 27.0 | 3.25e-01 | 80.2% | 68.3% |
| 1tx3D00 | 3.40.600.10 | Alpha Beta › 3-Layer(aba) Sandwich › ECO RV Endonuclease; Chain A › DNA mismatch repair MutH/Restriction endonuclease, type II | 0.52 | 37.0 | 3.55e-01 | 70.5% | 89.3% |
| 1lqlA02 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.50 | 25.0 | 3.50e-01 | 80.2% | 98.1% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 148043 | 2008.1.1.50 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › YqaJ | 0.85 | 69.0 | 7.40e-01 | 95.9% | 94.8% |
| 3647811 | 2008.1.1.50 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › YqaJ | 0.85 | 75.0 | 7.02e-01 | 100.0% | 77.6% |
| 3614372 | 2008.1.1.50 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › YqaJ | 0.84 | 70.0 | 6.54e-01 | 98.2% | 71.5% |
| 3945442 | 2008.1.1.50 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › YqaJ | 0.80 | 71.0 | 7.29e-01 | 100.0% | 96.6% |
| 3262255 | 2008.1.1.50 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › YqaJ | 0.80 | 63.0 | 7.00e-01 | 84.8% | 100.0% |
| 4559667 | 2008.1.1.50 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › YqaJ | 0.79 | 71.0 | 6.39e-01 | 92.2% | 82.9% |
| 2491448 | 2008.1.1.50 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › YqaJ | 0.79 | 75.0 | 6.01e-01 | 100.0% | 83.1% |
| 5012863 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.78 | 61.0 | 6.48e-01 | 90.8% | 89.2% |
| 5012280 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.76 | 58.0 | 5.96e-01 | 90.8% | 82.0% |
| 136966 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.76 | 67.0 | 6.68e-01 | 91.7% | 95.1% |
| 182718 | 2008.1.1.2 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Viral_alk_exo | 0.71 | 68.0 | 5.24e-01 | 100.0% | 71.2% |
| 5029815 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.70 | 62.0 | 6.26e-01 | 91.7% | 94.4% |
| 4062847 | 2008.1.1.18 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › eIF-3_zeta | 0.66 | 61.0 | 5.04e-01 | 100.0% | 86.4% |
| 3932439 | 2008.1.1.18 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › eIF-3_zeta | 0.65 | 61.0 | 5.02e-01 | 100.0% | 85.2% |
| 3735828 | 2008.1.1.18 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › eIF-3_zeta | 0.65 | 60.0 | 4.88e-01 | 100.0% | 83.0% |
| 3250545 | 2008.1.1.18 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › eIF-3_zeta | 0.65 | 60.0 | 5.07e-01 | 100.0% | 84.7% |
| 4024552 | 2008.1.1.18 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › eIF-3_zeta | 0.64 | 59.0 | 4.91e-01 | 100.0% | 86.8% |
| 3869106 | 2008.1.1.91 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NARG2_C | 0.63 | 58.0 | 4.92e-01 | 100.0% | 78.2% |
| 5056974 | 2008.1.1.159 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Csa1 | 0.63 | 59.0 | 5.06e-01 | 100.0% | 83.6% |
| 4081795 | 2008.1.1.27 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RAI1 | 0.62 | 58.0 | 4.96e-01 | 100.0% | 90.7% |
| 3599093 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.62 | 57.0 | 4.80e-01 | 100.0% | 87.0% |
| 3477161 | 5104.1.1.3 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA2 | 0.62 | 28.0 | 3.33e-01 | 80.2% | 61.3% |
| 3389714 | 2008.1.1.27 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RAI1 | 0.62 | 58.0 | 4.78e-01 | 100.0% | 80.5% |
| 3415033 | 2008.1.1.27 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RAI1 | 0.61 | 56.0 | 4.76e-01 | 100.0% | 80.6% |
| 3486967 | 5104.1.1.0 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases | 0.61 | 27.0 | 3.30e-01 | 80.2% | 61.3% |
| 5012774 | 324.1.1.0 ↗ | a+b two layers › OsmC-like › OsmC-like › OsmC-like | 0.60 | 26.0 | 3.85e-01 | 79.7% | 91.6% |
| 3243708 | 2008.1.1.27 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RAI1 | 0.60 | 55.0 | 4.76e-01 | 100.0% | 87.5% |
| 3230331 | 2008.1.1.27 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RAI1 | 0.60 | 55.0 | 4.75e-01 | 100.0% | 87.5% |
| 3628154 | 2008.1.1.91 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NARG2_C | 0.58 | 53.0 | 4.67e-01 | 100.0% | 79.7% |
| 3939159 | 2008.1.1.91 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NARG2_C | 0.57 | 53.0 | 4.55e-01 | 100.0% | 79.4% |
| 3636898 | 5104.1.1.3 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA2 | 0.55 | 28.0 | 3.28e-01 | 80.2% | 66.3% |
| 159540 | 2008.1.1.55 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RestrictionSfiI | 0.54 | 39.0 | 3.59e-01 | 72.8% | 64.0% |
| 3422343 | 325.1.2.1 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Molybdopterin synthase subunit MoaE › MoaE | 0.53 | 21.0 | 3.35e-01 | 78.3% | 96.2% |
| 4053844 | 2008.1.1.10 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › MutH | 0.53 | 38.0 | 3.82e-01 | 72.8% | 72.5% |
D2
medium
residues 281-368