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MT889379.1__QOP65401.1__SEA_DIABLA_75__00074

Bact-Vir

MT889379.1__QOP65401.1__SEA_DIABLA_75__00074

Identity

Accession:
MT889379 ↗
Kingdom:
phage

Quality

70.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Montyvirus› Gordonia_phage_Diabla

TaxID: 2776859

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 20-187
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1xszA03 3.30.310.140 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › sec7 domains 0.55 44.0 4.60e-01 95.8% 91.1%
1uzxA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.54 34.0 3.66e-01 89.3% 73.6%
1tw0A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 41.0 4.30e-01 93.5% 90.4%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3251381 295.1.1.4 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.54 21.0 3.36e-01 82.7% 92.3%
3693249 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.53 28.0 3.12e-01 94.0% 62.3%
5003221 241.15.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.51 32.0 3.79e-01 94.6% 91.3%
4935307 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.51 24.0 3.45e-01 88.1% 95.0%
3212189 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.50 27.0 3.15e-01 73.8% 73.0%
D2 high residues 207-276
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2d56A00 3.30.30.110 Alpha Beta › 2-Layer Sandwich › Defensin A-like › Antibacterial factor-related peptide 0.57 29.0 3.36e-01 71.4% 66.0%
1ezvC00 1.20.810.10 Mainly Alpha › Up-down Bundle › Cytochrome Bc1 Complex; Chain C › Cytochrome Bc1 Complex; Chain C 0.56 44.0 2.82e-01 87.1% 53.8%
2x5cA01 3.30.70.3590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 37.0 3.45e-01 71.4% 71.4%
4ew5A00 3.10.450.160 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › inner membrane protein cigr 0.53 37.0 3.28e-01 72.9% 83.3%
3zcoA00 1.10.10.2450 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.53 43.0 3.62e-01 92.9% 52.8%
3ohsX02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.52 43.0 3.10e-01 91.4% 82.9%
4bzaA01 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.52 39.0 3.97e-01 95.7% 82.4%
1wj5A01 1.10.10.980 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › CST, Suppressor of Cdc13 homolog, complex subunit STN1, N-terminal domain 0.51 42.0 3.78e-01 90.0% 83.7%
4c1sA00 1.50.10.20 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.51 44.0 2.77e-01 95.7% 46.9%
2ndpA00 4.10.520.10 Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins 0.51 39.0 3.50e-01 82.9% 74.7%
4g6vA00 3.40.1350.120 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.50 38.0 3.11e-01 81.4% 89.4%
1d8cA02 2.170.170.11 Mainly Beta › Beta Complex › Malate synthase G - maily-beta sub-domain › Malate synthase G - maily-beta sub-domain 0.50 43.0 3.62e-01 100.0% 55.5%
3llcA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.50 43.0 2.91e-01 95.7% 52.9%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3580103 105.1.1.1 ↗ alpha duplicates or obligate multimers › HLH-like › HLH, helix-loop-helix DNA-binding domain › HLH, helix-loop-helix DNA-binding domain › HLH 0.66 34.0 3.29e-01 72.9% 43.8%
3217457 105.1.1.1 ↗ alpha duplicates or obligate multimers › HLH-like › HLH, helix-loop-helix DNA-binding domain › HLH, helix-loop-helix DNA-binding domain › HLH 0.66 40.0 3.74e-01 71.4% 47.8%
4992272 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 37.0 3.15e-01 92.9% 39.2%
3692189 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 41.0 3.30e-01 80.0% 58.5%
3596194 109.50.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Pre-mRNA-splicing factor 38A › Pre-mRNA-splicing factor 38A 0.55 48.0 3.44e-01 100.0% 45.1%
3846390 2008.1.1.84 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Rab15_effector 0.53 47.0 3.37e-01 100.0% 57.7%
3244600 101.1.2.178 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_61 0.53 43.0 3.79e-01 90.0% 75.2%
4968601 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 44.0 3.82e-01 90.0% 70.5%
5061575 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 34.0 3.09e-01 91.4% 46.0%
4932713 2004.1.1.5 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.53 40.0 2.76e-01 84.3% 81.5%
3432076 101.1.2.386 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.52 43.0 3.71e-01 90.0% 64.5%
3372743 328.7.1.0 ↗ a+b two layers › IF3-like › Smr domain › Smr domain 0.52 38.0 3.24e-01 78.6% 86.1%
1699722 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 38.0 3.54e-01 92.9% 62.9%
4955353 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 41.0 3.53e-01 90.0% 63.5%
4264297 101.1.2.760 ↗ alpha arrays › HTH › HTH › winged helix domain › PF30824 0.51 42.0 3.44e-01 92.9% 65.9%
3708520 2002.1.1.414 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Wyosine_form 0.51 46.0 2.86e-01 100.0% 82.4%
5054273 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.50 37.0 2.95e-01 77.1% 42.0%