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MT889387.1__QOP66149.1__SEA_DANIELLEIGNACE_8__00008
Bact-VirMT889387.1__QOP66149.1__SEA_DANIELLEIGNACE_8__00008
Identity
- Accession:
- MT889387 ↗
- Kingdom:
- phage
Quality
76.0
mean pLDDT
Taxonomy
TaxID: 2776853
Cluster
View cluster (29 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 46-102
Domain cluster:
representative
D2
high
residues 107-311
Domain cluster:
rep: IMGVR_UViG_3300010237_000006-3300010237-Ga0136250_1000002017__D103-269
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF17289.9 best | Terminase_6C | 31.3 | 2.60e-07 | 78.0% | 92.9% |
CATH (34)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5m1pB00 | 3.30.420.240 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.82 | 72.0 | 7.51e-01 | 98.0% | 97.9% |
| 3c6aA00 | 3.30.420.240 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.78 | 70.0 | 7.16e-01 | 100.0% | 97.0% |
| 4dkwA00 | 3.30.420.280 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.78 | 66.0 | 6.79e-01 | 98.0% | 93.3% |
| 2wbnA00 | 3.30.420.280 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.77 | 64.0 | 6.84e-01 | 98.5% | 100.0% |
| 4ifeA02 | 3.30.420.240 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.77 | 70.0 | 6.76e-01 | 95.1% | 97.8% |
| 7essA01 | 3.30.420.140 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain | 0.72 | 47.0 | 5.76e-01 | 83.9% | 100.0% |
| 3bzcA03 | 3.30.420.140 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain | 0.70 | 44.0 | 5.51e-01 | 82.0% | 100.0% |
| 1sz2B01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.68 | 40.0 | 5.13e-01 | 86.3% | 99.2% |
| 3thxA02 | 3.30.420.110 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › MutS, connector domain | 0.67 | 46.0 | 5.13e-01 | 86.3% | 86.7% |
| 1vhxB00 | 3.30.420.140 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain | 0.66 | 44.0 | 5.33e-01 | 88.3% | 100.0% |
| 5d84A02 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.58 | 29.0 | 3.70e-01 | 90.7% | 82.0% |
| 3cgbA03 | 3.30.390.30 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain | 0.57 | 31.0 | 4.14e-01 | 90.7% | 96.4% |
| 2cduA03 | 3.30.390.30 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain | 0.57 | 31.0 | 4.16e-01 | 91.2% | 96.5% |
| 1vmiA01 | 3.40.50.10950 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.57 | 34.0 | 3.66e-01 | 88.3% | 67.4% |
| 1woqA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.57 | 39.0 | 4.64e-01 | 70.7% | 100.0% |
| 1yqzA03 | 3.30.390.30 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain | 0.57 | 30.0 | 4.10e-01 | 90.2% | 97.2% |
| 2x6nD00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.56 | 39.0 | 4.14e-01 | 70.2% | 100.0% |
| 7febA03 | 3.40.50.12790 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › FHIPEP family, domain 4 | 0.56 | 26.0 | 3.74e-01 | 78.5% | 96.7% |
| 1nhpA03 | 3.30.390.30 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain | 0.56 | 31.0 | 4.07e-01 | 91.2% | 97.3% |
| 3lkbA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.55 | 44.0 | 4.32e-01 | 87.8% | 78.1% |
| 1gkuB05 | 3.40.50.140 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.55 | 32.0 | 4.08e-01 | 82.9% | 96.7% |
| 2h9aA02 | 3.40.50.11600 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.55 | 33.0 | 4.04e-01 | 90.2% | 92.9% |
| 4pagA01 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.55 | 33.0 | 4.00e-01 | 84.9% | 89.0% |
| 5w56B02 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.54 | 34.0 | 4.11e-01 | 99.0% | 99.2% |
| 5cnxA01 | 3.40.350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Creatine Amidinohydrolase; Chain A, domain 1 › Creatinase/prolidase N-terminal domain | 0.54 | 33.0 | 4.18e-01 | 85.4% | 100.0% |
| 2q07A01 | 3.40.50.10630 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Uracil-DNA glycosylase-like | 0.54 | 34.0 | 4.01e-01 | 90.2% | 92.1% |
| 3il0A00 | 3.40.350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Creatine Amidinohydrolase; Chain A, domain 1 › Creatinase/prolidase N-terminal domain | 0.53 | 33.0 | 4.17e-01 | 85.9% | 100.0% |
| 6tm3A02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.53 | 32.0 | 3.66e-01 | 84.4% | 78.8% |
| 4ldaB00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.53 | 32.0 | 3.91e-01 | 90.2% | 94.5% |
| 4kp7A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.53 | 32.0 | 3.60e-01 | 76.6% | 77.4% |
| 3q6dA01 | 3.40.350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Creatine Amidinohydrolase; Chain A, domain 1 › Creatinase/prolidase N-terminal domain | 0.52 | 32.0 | 4.09e-01 | 85.4% | 100.0% |
| 5kxhA02 | 3.40.50.11350 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.52 | 34.0 | 3.77e-01 | 79.0% | 81.5% |
| 3i09A01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.52 | 42.0 | 4.25e-01 | 90.7% | 85.9% |
| 3gaaB00 | 3.40.50.10900 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › PAC-like subunit | 0.50 | 40.0 | 3.79e-01 | 82.4% | 90.9% |
ECOD (50)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4929631 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.91 | 76.0 | 8.08e-01 | 99.0% | 96.7% |
| 5083931 | 2484.1.1.77 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_6C | 0.90 | 75.0 | 8.13e-01 | 97.6% | 100.0% |
| 4972935 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.88 | 74.0 | 7.91e-01 | 99.0% | 97.8% |
| 4975080 | 2484.1.1.77 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_6C | 0.88 | 73.0 | 7.71e-01 | 99.5% | 94.6% |
| 5031041 | 2484.1.1.77 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_6C | 0.85 | 77.0 | 7.90e-01 | 99.5% | 97.4% |
| 3964372 | 2484.1.1.77 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_6C | 0.84 | 72.0 | 7.36e-01 | 99.5% | 92.3% |
| 4988089 | 2484.1.1.77 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_6C | 0.84 | 75.0 | 7.87e-01 | 96.6% | 100.0% |
| 4975081 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.82 | 61.0 | 6.93e-01 | 90.2% | 100.0% |
| 5031052 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.81 | 76.0 | 7.63e-01 | 96.6% | 98.5% |
| 3946809 | 2484.1.1.77 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_6C | 0.81 | 76.0 | 7.64e-01 | 100.0% | 97.6% |
| 355225 | 2484.1.1.77 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_6C | 0.78 | 70.0 | 7.15e-01 | 100.0% | 97.0% |
| 185684 | 2484.1.1.77 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_6C | 0.78 | 66.0 | 6.79e-01 | 98.0% | 93.3% |
| 4034552 | 2484.1.1.76 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_3C | 0.77 | 63.0 | 6.80e-01 | 98.5% | 99.4% |
| 4524082 | 2484.1.1.76 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_3C | 0.77 | 64.0 | 6.77e-01 | 98.5% | 96.2% |
| 3166064 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.77 | 72.0 | 6.99e-01 | 97.1% | 99.5% |
| 2877581 | 2484.1.1.95 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase-T7_RNaseH-like | 0.76 | 72.0 | 6.54e-01 | 99.5% | 91.2% |
| 4263690 | 2484.1.1.48 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II | 0.75 | 46.0 | 5.36e-01 | 87.8% | 84.8% |
| 3164493 | 2484.1.1.76 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_3C | 0.75 | 72.0 | 6.91e-01 | 99.0% | 99.1% |
| 4031863 | 2484.1.1.86 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TerL_nuclease | 0.73 | 70.0 | 6.69e-01 | 100.0% | 95.2% |
| 4029684 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.71 | 47.0 | 5.30e-01 | 83.9% | 87.1% |
| 4093975 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.71 | 41.0 | 5.38e-01 | 84.9% | 99.2% |
| 2623870 | 2484.1.1.44 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pox_A22 | 0.70 | 50.0 | 5.84e-01 | 83.9% | 100.0% |
| 4356839 | 2484.1.1.40 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX | 0.70 | 48.0 | 5.69e-01 | 85.9% | 100.0% |
| 4326104 | 2484.1.1.48 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II | 0.67 | 45.0 | 4.86e-01 | 88.8% | 78.3% |
| 4278038 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.67 | 49.0 | 3.22e-01 | 88.8% | 18.7% |
| 3589874 | 2484.1.1.40 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX | 0.67 | 46.0 | 5.45e-01 | 85.4% | 100.0% |
| 4662010 | 2484.1.1.48 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II | 0.64 | 47.0 | 5.02e-01 | 88.8% | 86.3% |
| 3457302 | 2484.1.1.40 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX | 0.63 | 47.0 | 5.08e-01 | 89.8% | 91.2% |
| 4255201 | 2484.1.1.7 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ribosomal_S11 | 0.63 | 34.0 | 4.48e-01 | 72.7% | 96.4% |
| 3988130 | 2484.1.1.9 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve | 0.59 | 34.0 | 4.26e-01 | 73.7% | 92.0% |
| 3476094 | 7590.1.1.2 ↗ | a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Piwi | 0.58 | 36.0 | 4.06e-01 | 87.3% | 78.1% |
| 3952404 | 2484.1.1.199 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Transposase_mut | 0.58 | 35.0 | 3.99e-01 | 78.0% | 79.3% |
| 4929499 | 2484.1.1.101 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS240 | 0.58 | 39.0 | 4.32e-01 | 84.9% | 84.4% |
| 4996596 | 7569.1.1.5 ↗ | a/b three-layered sandwiches › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › DUF6884 | 0.58 | 34.0 | 3.88e-01 | 98.0% | 76.7% |
| 4509268 | 2484.1.1.48 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II | 0.58 | 44.0 | 4.53e-01 | 87.3% | 81.0% |
| 3474979 | 7590.1.1.0 ↗ | a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs | 0.58 | 36.0 | 4.05e-01 | 87.3% | 80.0% |
| 4943061 | 244.2.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain | 0.55 | 34.0 | 4.31e-01 | 92.7% | 100.0% |
| 3570901 | 2484.1.1.315 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TNP-like_RNaseH_N, TNP-like_GBD, TNP-like_RNaseH_C | 0.55 | 45.0 | 3.65e-01 | 83.9% | 95.1% |
| 4958777 | 2484.1.1.18 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 | 0.55 | 40.0 | 3.47e-01 | 73.7% | 81.2% |
| 2050701 | 2007.1.14.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like | 0.55 | 34.0 | 3.90e-01 | 86.3% | 82.2% |
| 5021213 | 2007.1.14.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › Oxidored_nitro | 0.55 | 31.0 | 3.56e-01 | 88.8% | 72.7% |
| 5027917 | 2484.1.1.101 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS240 | 0.55 | 38.0 | 3.65e-01 | 83.9% | 59.6% |
| 4105352 | 2484.1.1.199 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Transposase_mut | 0.54 | 39.0 | 3.51e-01 | 72.7% | 81.0% |
| 4958703 | 2484.1.1.18 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 | 0.54 | 40.0 | 3.44e-01 | 75.1% | 91.3% |
| 3281104 | 2007.1.4.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain › DAGK_cat | 0.54 | 31.0 | 3.79e-01 | 86.3% | 87.7% |
| 3987418 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.53 | 36.0 | 3.83e-01 | 89.3% | 76.8% |
| 4952913 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.53 | 38.0 | 4.10e-01 | 83.9% | 85.0% |
| 4984498 | 7592.1.1.0 ↗ | a/b three-layered sandwiches › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains | 0.51 | 30.0 | 3.63e-01 | 85.4% | 87.2% |
| 3988981 | 2484.1.1.66 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_3 | 0.51 | 37.0 | 3.98e-01 | 86.3% | 86.1% |
| 4134911 | 2007.1.5.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › ATC-like › Asp_Glu_race | 0.50 | 34.0 | 3.99e-01 | 71.2% | 94.7% |