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MT889387.1__QOP66183.1__SEA_DANIELLEIGNACE_43__00043
Bact-VirMT889387.1__QOP66183.1__SEA_DANIELLEIGNACE_43__00043
Identity
- Accession:
- MT889387 ↗
- Kingdom:
- phage
Quality
68.5
mean pLDDT
Taxonomy
TaxID: 2776853
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 17-124
Domain cluster:
representative
CATH (41)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4bs9A05 | 3.30.160.660 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.64 | 50.0 | 4.93e-01 | 97.2% | 78.1% |
| 3kztA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.63 | 46.0 | 4.31e-01 | 75.9% | 93.2% |
| 2l2mA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.63 | 40.0 | 4.80e-01 | 82.4% | 100.0% |
| 3lydA01 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.60 | 43.0 | 3.96e-01 | 98.1% | 56.3% |
| 2h36X00 | 3.30.160.300 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.60 | 35.0 | 3.55e-01 | 90.7% | 56.5% |
| 2dixA01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.59 | 37.0 | 4.25e-01 | 84.3% | 87.2% |
| 5bkaE01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.59 | 52.0 | 4.83e-01 | 94.4% | 97.7% |
| 2hqsA01 | 3.40.50.10070 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › TolB, N-terminal domain | 0.59 | 50.0 | 4.60e-01 | 93.5% | 81.0% |
| 4ojdH01 | 2.60.98.60 | Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Cell-cell fusogen EFF/AFF, domain 1 | 0.59 | 44.0 | 3.89e-01 | 79.6% | 76.8% |
| 3n8bA00 | 3.10.450.700 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.59 | 37.0 | 4.23e-01 | 83.3% | 89.3% |
| 2w9jA00 | 3.30.720.10 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 | 0.58 | 32.0 | 3.79e-01 | 70.4% | 80.3% |
| 4gnxC03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.58 | 42.0 | 3.55e-01 | 76.9% | 71.6% |
| 3a9gA00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.57 | 47.0 | 3.34e-01 | 90.7% | 32.8% |
| 3e99A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 48.0 | 4.31e-01 | 91.7% | 98.0% |
| 3wodG00 | 2.30.30.1250 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 42.0 | 4.01e-01 | 98.1% | 69.3% |
| 2l3tA02 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.55 | 45.0 | 4.64e-01 | 91.7% | 96.0% |
| 2gtlO02 | 2.40.128.620 | Mainly Beta › Beta Barrel › Lipocalin › | 0.55 | 44.0 | 3.86e-01 | 87.0% | 71.2% |
| 2hngA00 | 3.10.420.10 | Alpha Beta › Roll › Bacterial Protein-export protein SecB › SecB-like | 0.55 | 38.0 | 3.70e-01 | 75.9% | 63.2% |
| 3o0lA00 | 2.60.40.3230 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 38.0 | 3.88e-01 | 96.3% | 72.5% |
| 1jkmA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.55 | 48.0 | 3.37e-01 | 98.1% | 85.5% |
| 2akjA03 | 3.30.413.10 | Alpha Beta › 2-Layer Sandwich › Sulfite Reductase Hemoprotein; domain 1 › Sulfite Reductase Hemoprotein, domain 1 | 0.55 | 47.0 | 4.56e-01 | 96.3% | 88.8% |
| 1zj8A04 | 3.30.413.10 | Alpha Beta › 2-Layer Sandwich › Sulfite Reductase Hemoprotein; domain 1 › Sulfite Reductase Hemoprotein, domain 1 | 0.53 | 46.0 | 4.17e-01 | 96.3% | 88.5% |
| 2gtlN02 | 2.40.128.620 | Mainly Beta › Beta Barrel › Lipocalin › | 0.53 | 43.0 | 3.77e-01 | 89.8% | 70.0% |
| 3f7sA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 47.0 | 4.31e-01 | 98.1% | 95.8% |
| 2hdwA01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.53 | 43.0 | 3.49e-01 | 91.7% | 74.8% |
| 3racA00 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.52 | 45.0 | 3.20e-01 | 95.4% | 61.4% |
| 1z5bB03 | 3.30.230.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.52 | 38.0 | 3.41e-01 | 98.1% | 54.4% |
| 3nqzA02 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 37.0 | 4.09e-01 | 96.3% | 97.6% |
| 1hp1A01 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.52 | 39.0 | 2.87e-01 | 81.5% | 88.7% |
| 1uzxA00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.52 | 45.0 | 4.20e-01 | 98.1% | 89.3% |
| 6zepA01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.52 | 45.0 | 3.26e-01 | 99.1% | 77.2% |
| 2rjzA02 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.51 | 39.0 | 4.10e-01 | 98.1% | 87.9% |
| 1mpxA01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.51 | 44.0 | 3.37e-01 | 98.1% | 86.7% |
| 4bj8K00 | 2.40.128.30 | Mainly Beta › Beta Barrel › Lipocalin › Avidin-like | 0.51 | 44.0 | 4.33e-01 | 99.1% | 86.7% |
| 2ciuA00 | 3.10.450.320 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Mitochondrial import inner membrane translocase subunit Tim21 | 0.51 | 43.0 | 4.17e-01 | 94.4% | 87.8% |
| 2qrdA00 | 3.30.310.80 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 | 0.51 | 38.0 | 3.82e-01 | 80.6% | 90.4% |
| 3ff2A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 42.0 | 4.10e-01 | 90.7% | 99.1% |
| 3m9qA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 32.0 | 3.77e-01 | 81.5% | 95.8% |
| 4fwwA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.51 | 42.0 | 2.85e-01 | 94.4% | 62.5% |
| 7f13A01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.50 | 44.0 | 4.06e-01 | 99.1% | 87.5% |
| 1oygA01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.50 | 43.0 | 2.88e-01 | 94.4% | 31.1% |
ECOD (49)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3412961 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.71 | 41.0 | 2.72e-01 | 70.4% | 14.7% |
| 3924083 | 2484.1.1.204 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27046, PF27073 | 0.69 | 40.0 | 3.46e-01 | 73.1% | 35.9% |
| 3735671 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.69 | 49.0 | 5.08e-01 | 86.1% | 79.0% |
| 3515197 | 4051.1.1.2 ↗ | a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A | 0.68 | 61.0 | 5.25e-01 | 100.0% | 80.6% |
| 3508989 | 2484.1.1.230 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27073 | 0.68 | 40.0 | 3.56e-01 | 74.1% | 40.0% |
| 3484227 | 4051.1.1.0 ↗ | a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz | 0.67 | 59.0 | 5.11e-01 | 99.1% | 80.6% |
| 3221077 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.66 | 41.0 | 4.73e-01 | 81.5% | 85.0% |
| 3610755 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.65 | 46.0 | 4.53e-01 | 79.6% | 67.8% |
| 3739446 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.65 | 49.0 | 5.18e-01 | 92.6% | 90.5% |
| 4011588 | 4325.1.1.0 ↗ | mixed a+b and a/b › YegP-like › YegP-like › YegP-like | 0.65 | 43.0 | 4.96e-01 | 82.4% | 97.3% |
| 3651732 | 2484.1.1.157 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF4371 | 0.62 | 40.0 | 3.00e-01 | 71.3% | 25.9% |
| 3710326 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.62 | 43.0 | 4.77e-01 | 86.1% | 91.8% |
| 3676745 | 2484.1.1.157 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF4371 | 0.62 | 40.0 | 3.66e-01 | 71.3% | 50.0% |
| 3987263 | 4321.1.1.3 ↗ | a+b two layers › Peptidoglycan deacetylase N-terminal noncatalytic region › Peptidoglycan deacetylase N-terminal noncatalytic region › Peptidoglycan deacetylase N-terminal noncatalytic region › PgdA_N | 0.61 | 46.0 | 3.66e-01 | 78.7% | 67.3% |
| 3683658 | 2484.1.1.157 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF4371 | 0.61 | 39.0 | 2.73e-01 | 71.3% | 19.4% |
| 3663874 | 2484.1.1.157 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF4371 | 0.61 | 40.0 | 2.67e-01 | 71.3% | 17.3% |
| 3823072 | 2484.1.1.165 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.60 | 46.0 | 2.99e-01 | 82.4% | 86.4% |
| 3259407 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.59 | 41.0 | 4.46e-01 | 85.2% | 89.4% |
| 4508852 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.59 | 52.0 | 5.11e-01 | 96.3% | 94.8% |
| 3939338 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.58 | 43.0 | 3.50e-01 | 76.9% | 71.3% |
| 3920627 | 192.18.1.0 ↗ | alpha bundles › Long alpha-hairpin › MxiH-like › MxiH-like | 0.58 | 42.0 | 2.68e-01 | 75.0% | 86.0% |
| 3198929 | 331.4.1.3 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › AdenylateSensor | 0.57 | 45.0 | 4.17e-01 | 85.2% | 65.2% |
| 3736768 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.57 | 51.0 | 3.73e-01 | 100.0% | 77.0% |
| 3913149 | 216.1.1.3 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › UEV | 0.56 | 49.0 | 4.49e-01 | 100.0% | 91.3% |
| 3891434 | 216.1.1.3 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › UEV | 0.55 | 48.0 | 4.50e-01 | 100.0% | 98.6% |
| 4937519 | 2.1.1.135 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF3592 | 0.55 | 37.0 | 3.65e-01 | 77.8% | 63.3% |
| 3566979 | 2484.1.1.198 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Dimer_Tnp_hAT, DUF4371 | 0.54 | 41.0 | 2.59e-01 | 78.7% | 81.6% |
| 3811894 | 2484.1.1.198 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Dimer_Tnp_hAT, DUF4371 | 0.54 | 41.0 | 2.75e-01 | 78.7% | 73.7% |
| 5073154 | 2004.1.1.19 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras | 0.54 | 46.0 | 3.96e-01 | 93.5% | 94.3% |
| 3818311 | 216.1.1.3 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › UEV | 0.54 | 47.0 | 4.21e-01 | 100.0% | 87.5% |
| 3610972 | 330.1.1.22 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › PF26536 | 0.54 | 42.0 | 3.95e-01 | 83.3% | 83.8% |
| 3647962 | 216.1.1.3 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › UEV | 0.53 | 46.0 | 4.22e-01 | 97.2% | 95.9% |
| 3603591 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.53 | 45.0 | 3.20e-01 | 94.4% | 38.3% |
| 3566243 | 2484.1.1.239 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Dimer_Tnp_hAT, PF27046, PF27073 | 0.53 | 39.0 | 2.53e-01 | 75.9% | 82.1% |
| 3406375 | 223.1.1.29 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_11 | 0.53 | 39.0 | 3.37e-01 | 80.6% | 46.7% |
| 3571382 | 2484.1.1.204 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27046, PF27073 | 0.53 | 41.0 | 2.64e-01 | 81.5% | 83.5% |
| 4984611 | 2004.1.1.16 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Arf | 0.53 | 47.0 | 3.77e-01 | 98.1% | 90.6% |
| 3531937 | 2484.1.1.317 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF28925 | 0.53 | 40.0 | 2.57e-01 | 78.7% | 86.7% |
| 3537025 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.53 | 40.0 | 2.49e-01 | 78.7% | 82.1% |
| 4608992 | 243.1.1.1 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Ring_hydroxyl_B | 0.52 | 47.0 | 4.14e-01 | 98.1% | 95.6% |
| 3928581 | 2484.1.1.157 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF4371 | 0.52 | 39.0 | 2.51e-01 | 78.7% | 86.3% |
| 3376135 | 2484.1.1.106 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF659 | 0.52 | 39.0 | 2.56e-01 | 76.9% | 78.1% |
| 3432530 | 7579.1.1.42 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Hydrolase_4 | 0.52 | 46.0 | 3.31e-01 | 100.0% | 91.9% |
| 1822898 | 2004.1.1.199 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23,SbcC_Walker_B | 0.51 | 36.0 | 3.12e-01 | 74.1% | 70.4% |
| 3841343 | 2484.1.1.239 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Dimer_Tnp_hAT, PF27046, PF27073 | 0.51 | 39.0 | 2.55e-01 | 81.5% | 84.0% |
| 3507177 | 2484.1.1.204 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27046, PF27073 | 0.51 | 39.0 | 2.65e-01 | 81.5% | 98.6% |
| 4074364 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.51 | 43.0 | 4.08e-01 | 93.5% | 84.6% |
| 3780866 | 2484.1.1.204 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27046, PF27073 | 0.51 | 39.0 | 2.51e-01 | 81.5% | 84.0% |
| 3826575 | 2484.1.1.198 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Dimer_Tnp_hAT, DUF4371 | 0.51 | 38.0 | 2.50e-01 | 79.6% | 82.5% |