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MT889387.1__QOP66228.1__SEA_DANIELLEIGNACE_88__00088

Bact-Vir

MT889387.1__QOP66228.1__SEA_DANIELLEIGNACE_88__00088

Identity

Accession:
MT889387 ↗
Kingdom:
phage

Quality

74.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 13-64
PDB
Domain cluster: representative
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4cxfA01 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.79 68.0 5.79e-01 100.0% 78.2%
1t98A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 54.0 4.55e-01 73.1% 47.1%
1tfeA02 1.10.286.20 Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › 0.78 53.0 5.56e-01 71.2% 86.7%
5xs2B02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.76 65.0 4.92e-01 100.0% 47.0%
4yosA02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.75 64.0 4.61e-01 100.0% 41.9%
2i5uA00 1.10.10.630 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DnaD domain-like 0.75 64.0 5.72e-01 100.0% 79.2%
4bbrM00 1.10.472.170 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › 0.74 63.0 4.30e-01 98.1% 33.7%
1zp2A02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.74 64.0 5.05e-01 100.0% 58.9%
2g8lB01 1.10.8.380 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 0.74 63.0 5.86e-01 98.1% 94.0%
2ffjA01 1.10.8.380 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 0.74 61.0 5.98e-01 94.2% 98.2%
6cnzF00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.74 63.0 4.55e-01 100.0% 52.5%
3qnmA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.73 63.0 5.24e-01 96.2% 76.7%
3ibyD02 1.10.287.1770 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.73 57.0 4.88e-01 94.2% 53.6%
1nxuA01 1.10.1530.10 Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel 0.73 61.0 5.41e-01 98.1% 77.2%
2lyiA01 1.10.274.60 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain 0.71 60.0 4.44e-01 100.0% 42.6%
2i53A01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.70 61.0 4.51e-01 100.0% 44.1%
3fblA00 1.20.58.800 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.70 57.0 4.90e-01 90.4% 86.6%
2iylD01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.70 56.0 5.32e-01 94.2% 76.9%
1rr7A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.70 47.0 4.96e-01 71.2% 80.4%
1c3cA03 1.10.40.30 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) 0.69 55.0 4.83e-01 90.4% 65.4%
1nvmA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.69 51.0 4.88e-01 84.6% 67.2%
4h8aB01 1.10.1530.10 Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel 0.69 58.0 5.58e-01 98.1% 100.0%
5l3wA01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.69 59.0 5.07e-01 98.1% 73.8%
4rocA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.69 57.0 4.71e-01 100.0% 65.0%
1yz6A02 1.10.150.190 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Translation initiation factor 2; subunit 1; domain 2 0.67 55.0 4.78e-01 96.2% 73.6%
2cdqA02 1.20.120.1320 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Aspartokinase, catalytic domain 0.67 58.0 4.78e-01 100.0% 73.2%
2px0A01 1.20.120.1380 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar FlhF biosynthesis protein, N domain 0.67 52.0 4.73e-01 88.5% 93.2%
4l0fA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.67 60.0 3.50e-01 100.0% 14.2%
4kjmA02 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.67 51.0 5.10e-01 88.5% 85.5%
2pmyA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.67 48.0 4.26e-01 75.0% 60.3%
3oc2A01 3.90.1310.10 Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) 0.66 45.0 3.18e-01 86.5% 22.0%
1oksA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.66 50.0 4.99e-01 88.5% 84.9%
3bbzA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.64 49.0 5.04e-01 96.2% 97.9%
1zv1A00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.64 52.0 5.08e-01 100.0% 84.7%
4heoA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.64 49.0 4.88e-01 94.2% 85.5%
1r4gA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.64 50.0 4.99e-01 90.4% 92.5%
3nz4B03 1.10.274.20 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Phenylalanine ammonia-lyase 1; domain 3 0.63 54.0 4.38e-01 100.0% 76.0%
1j09A04 1.10.8.70 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 0.62 47.0 4.89e-01 88.5% 100.0%
3kd3A02 1.10.150.210 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Phosphoserine phosphatase; domain 2 0.62 44.0 4.27e-01 78.8% 76.7%
2o38A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.62 50.0 4.61e-01 88.5% 92.3%
3bm1A00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.61 51.0 3.60e-01 94.2% 49.7%
3iieB03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.61 50.0 4.42e-01 100.0% 89.4%
3f2bA07 6.10.140.1510 Special › Helix non-globular › Helix Hairpins › 0.61 46.0 3.98e-01 90.4% 51.2%
4dhiB02 1.20.1300.20 Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Peptidase C65 Otubain, subdomain 2 0.60 46.0 3.51e-01 92.3% 98.6%
2ewfA02 1.20.1270.310 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.59 50.0 4.33e-01 96.2% 84.0%
1usyC00 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.57 49.0 3.12e-01 98.1% 62.0%
2xkrA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.56 47.0 2.89e-01 100.0% 16.7%
4p9tA01 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.56 47.0 3.71e-01 100.0% 70.0%
2p0tA01 1.10.60.30 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › PSPTO4464-like domains 0.56 40.0 3.58e-01 76.9% 67.1%
2qffA00 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.54 45.0 4.04e-01 94.2% 89.2%
ECOD (45)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3720888 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.83 58.0 5.08e-01 73.1% 52.0%
4955004 4009.1.1.0 alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins 0.80 68.0 6.50e-01 94.2% 100.0%
4024271 3871.1.1.1 alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN 0.78 64.0 4.68e-01 90.4% 71.9%
4940761 4009.1.1.0 alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins 0.76 65.0 5.93e-01 98.1% 91.4%
4968425 4009.1.1.1 alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › ARMT1-like_dom 0.75 64.0 5.84e-01 98.1% 88.6%
3279424 632.2.1.34 alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › OmdA 0.75 58.0 5.79e-01 86.5% 98.1%
4976690 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.75 61.0 6.19e-01 92.3% 100.0%
3923444 7579.1.1.1 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › COesterase 0.74 63.0 3.59e-01 98.1% 33.6%
5059586 181.1.1.0 alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins 0.73 65.0 5.68e-01 100.0% 70.9%
4961006 103.2.1.2 alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.73 61.0 5.48e-01 96.2% 74.7%
4987113 103.2.1.0 alpha arrays › RuvA-C › ATP cone › ATP cone 0.72 61.0 5.47e-01 96.2% 74.7%
3226963 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.72 56.0 5.24e-01 86.5% 86.2%
5001059 103.2.1.2 alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.72 62.0 5.44e-01 100.0% 83.7%
4485423 101.1.10.3 alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.71 60.0 4.72e-01 100.0% 55.8%
4948813 103.2.1.2 alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.70 60.0 5.29e-01 100.0% 88.7%
1041203 3239.1.1.1 alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 0.70 61.0 3.76e-01 100.0% 36.7%
4987957 103.2.1.0 alpha arrays › RuvA-C › ATP cone › ATP cone 0.70 58.0 5.20e-01 96.2% 74.7%
3861518 108.1.1.98 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_5, EF-hand_7 0.69 52.0 4.53e-01 88.5% 67.8%
3926569 7579.1.1.1 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › COesterase 0.68 57.0 3.28e-01 98.1% 33.0%
3579201 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.68 53.0 3.89e-01 88.5% 38.7%
5070580 181.1.1.0 alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins 0.68 57.0 5.55e-01 100.0% 98.3%
3618000 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.68 53.0 4.58e-01 88.5% 68.2%
5038065 181.1.1.1 alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N 0.67 56.0 5.19e-01 98.1% 91.4%
3762580 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.67 46.0 4.07e-01 73.1% 50.0%
1320689 872.11.1.0 a+b two layers › Dodecin subunit-like › Hypothetical protein FTT_1539c › Hypothetical protein FTT_1539c 0.67 45.0 3.37e-01 71.2% 27.6%
3282626 632.3.1.9 alpha bundles › immunoglobulin/albumin-binding domain-like › Phosphoprotein XD domain › Phosphoprotein XD domain › DUF1707 0.64 49.0 5.20e-01 86.5% 100.0%
3249080 2498.5.1.0 mixed a+b and a/b › Zincin-like › GroEL-intermediate domain like › GroEL-intermediate domain like 0.64 53.0 4.25e-01 96.2% 81.8%
5054075 632.22.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.62 46.0 4.44e-01 80.8% 96.7%
4927047 632.19.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A 0.62 48.0 4.40e-01 92.3% 94.7%
5061334 632.22.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.61 53.0 4.59e-01 96.2% 81.2%
3286824 632.2.1.17 alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › DUF1707 0.60 45.0 4.64e-01 86.5% 100.0%
5070668 632.11.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.59 50.0 4.45e-01 94.2% 82.7%
4982048 632.11.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.59 51.0 4.41e-01 96.2% 80.0%
5061758 632.22.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.59 51.0 4.49e-01 96.2% 86.7%
3603627 632.11.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.59 50.0 4.45e-01 96.2% 85.3%
5061725 632.23.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Helical linker domain in nicking endonuclease N.BspD6I › Helical linker domain in nicking endonuclease N.BspD6I 0.59 49.0 4.29e-01 94.2% 77.5%
5061727 632.23.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Helical linker domain in nicking endonuclease N.BspD6I › Helical linker domain in nicking endonuclease N.BspD6I 0.59 49.0 4.59e-01 94.2% 93.8%
5013682 632.18.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › hypothetical protein PA2901 › hypothetical protein PA2901 0.58 50.0 4.18e-01 96.2% 72.2%
5061756 632.11.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.58 51.0 4.33e-01 98.1% 77.6%
5062044 632.11.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.57 48.0 4.22e-01 96.2% 77.5%
5059135 632.11.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.57 47.0 4.22e-01 90.4% 85.7%
5070510 632.11.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.56 49.0 4.25e-01 98.1% 80.0%
4981744 6091.1.1.0 alpha bundles › Helical bundle domain in Endo-alpha-N-acetylgalactosaminidase › Helical bundle domain in Endo-alpha-N-acetylgalactosaminidase › Helical bundle domain in Endo-alpha-N-acetylgalactosaminidase 0.55 40.0 4.03e-01 82.7% 87.3%
5060024 632.11.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.54 41.0 3.69e-01 88.5% 65.0%
5059134 632.22.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.53 40.0 3.88e-01 88.5% 86.7%