←Back to structures

MT897908.1__QNO12913.1__SEA_SHAKENBAKE_96__00096

Bact-Vir

MT897908.1__QNO12913.1__SEA_SHAKENBAKE_96__00096

Identity

Accession:
MT897908 ↗
Kingdom:
phage

Quality

70.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Streptomyces_phage_ShakeNBake

TaxID: 2768142

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-97
PDB
Domain cluster: rep: MK686071.1__QBZ73559.1__SEA_MISCHIEF19_74__00074__D4-90
D2 medium residues 103-187
PDB
D3 medium residues 188-238
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2gviA03 3.30.60.20 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.86 53.0 6.24e-01 94.1% 94.1%
1zbdB00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.73 52.0 3.87e-01 100.0% 30.9%
2xzm500 3.30.1740.20 Alpha Beta › 2-Layer Sandwich › first zn-finger domain of poly(adp-ribose) polymerase-1 › Ribosomal protein S26 0.66 56.0 4.64e-01 100.0% 67.3%
3ossD00 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.62 48.0 3.48e-01 88.2% 52.2%
3j7aZ00 3.30.1230.20 Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › Ribosomal protein S21 0.62 49.0 4.45e-01 92.2% 73.6%
1ne2B00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.61 43.0 2.99e-01 76.5% 43.2%
2xzmZ00 3.30.1230.20 Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › Ribosomal protein S21 0.60 47.0 3.95e-01 92.2% 49.5%
3goxA02 3.30.60.130 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.58 42.0 4.18e-01 92.2% 72.2%
1xcjA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.55 39.0 2.60e-01 76.5% 79.5%
2oktA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.54 37.0 2.80e-01 72.5% 94.5%
1x31D00 3.30.2270.10 Alpha Beta › 2-Layer Sandwich › Folate-binding fold › Folate-binding superfamily 0.53 41.0 3.61e-01 96.1% 70.3%
2ihmB03 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.53 39.0 3.11e-01 82.4% 62.3%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5034882 4203.1.1.0 ↗ few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like 0.87 62.0 6.54e-01 90.2% 84.4%
4965229 377.1.1.133 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › DUF7569 0.78 56.0 5.70e-01 90.2% 78.0%
4029989 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.77 54.0 5.30e-01 90.2% 69.1%
4009252 3371.1.1.2 ↗ few secondary structure elements › Regulator of transcription protein Rtr1 › Regulator of transcription protein Rtr1 › Regulator of transcription protein Rtr1 › PF27493 0.76 60.0 6.07e-01 98.0% 88.0%
3309565 376.1.3.3 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE 0.74 59.0 5.15e-01 98.0% 57.5%
3937349 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.73 64.0 3.86e-01 98.0% 18.2%
4120496 377.1.1.8 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_S26e 0.73 55.0 4.90e-01 100.0% 57.3%
5050861 377.1.1.8 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_S26e 0.72 63.0 5.22e-01 100.0% 65.6%
3466575 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.72 55.0 5.09e-01 94.1% 64.6%
4941505 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.71 57.0 5.32e-01 90.2% 78.5%
5024194 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.71 61.0 5.42e-01 100.0% 77.3%
3307915 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.70 54.0 5.03e-01 94.1% 66.2%
5035402 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.70 62.0 5.34e-01 100.0% 71.2%
5076107 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.69 60.0 5.19e-01 100.0% 75.0%
4943668 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.69 59.0 4.98e-01 100.0% 66.7%
4946657 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.68 61.0 5.62e-01 98.0% 92.3%
3931962 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.68 61.0 3.73e-01 100.0% 29.0%
3696220 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.68 47.0 3.64e-01 100.0% 32.5%
5066402 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.67 57.0 5.28e-01 100.0% 83.8%
3301384 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.67 51.0 4.97e-01 94.1% 74.5%
5076094 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.66 42.0 4.08e-01 94.1% 56.7%
1438058 377.1.1.8 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_S26e 0.65 54.0 4.57e-01 100.0% 68.8%
4966035 376.1.3.98 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › DUF7562 0.64 49.0 4.67e-01 90.2% 70.0%
3267576 376.1.3.31 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › zf-4CXXC_R1 0.63 49.0 4.31e-01 88.2% 82.5%
2831825 3167.1.1.1 ↗ a+b two layers › 40S ribosomal protein rpS21 (S21e) › 40S ribosomal protein rpS21 (S21e) › 40S ribosomal protein rpS21 (S21e) › Ribosomal_S21e 0.62 49.0 4.58e-01 92.2% 77.9%
3440141 3012.1.1.11 ↗ a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › PF27677 0.62 44.0 3.66e-01 78.4% 96.0%
3599253 3167.1.1.0 ↗ a+b two layers › 40S ribosomal protein rpS21 (S21e) › 40S ribosomal protein rpS21 (S21e) › 40S ribosomal protein rpS21 (S21e) 0.62 48.0 4.30e-01 92.2% 66.3%
4833007 3167.1.1.1 ↗ a+b two layers › 40S ribosomal protein rpS21 (S21e) › 40S ribosomal protein rpS21 (S21e) › 40S ribosomal protein rpS21 (S21e) › Ribosomal_S21e 0.60 47.0 4.11e-01 92.2% 60.2%
3840997 371.1.1.2 ↗ few secondary structure elements › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 › Phospholip_A2_2 0.60 41.0 3.24e-01 98.0% 32.2%
1923015 3167.1.1.1 ↗ a+b two layers › 40S ribosomal protein rpS21 (S21e) › 40S ribosomal protein rpS21 (S21e) › 40S ribosomal protein rpS21 (S21e) › Ribosomal_S21e 0.60 47.0 3.94e-01 92.2% 49.5%
3377970 3167.1.1.1 ↗ a+b two layers › 40S ribosomal protein rpS21 (S21e) › 40S ribosomal protein rpS21 (S21e) › 40S ribosomal protein rpS21 (S21e) › Ribosomal_S21e 0.59 50.0 4.39e-01 100.0% 69.6%
4474912 377.4.1.1 ↗ few secondary structure elements › Glucocorticoid receptor-like › YlxR-like › YlxR-like › YlxR 0.58 50.0 4.10e-01 100.0% 54.4%
5073756 304.139.1.3 ↗ a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › Cas_Cas7 0.57 42.0 2.58e-01 78.4% 51.2%
3701445 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 45.0 3.50e-01 98.0% 65.9%
3229165 3167.1.1.1 ↗ a+b two layers › 40S ribosomal protein rpS21 (S21e) › 40S ribosomal protein rpS21 (S21e) › 40S ribosomal protein rpS21 (S21e) › Ribosomal_S21e 0.56 44.0 3.79e-01 90.2% 61.4%
5076338 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.56 44.0 3.14e-01 94.1% 46.5%
3493752 158.1.1.1 ↗ alpha bundles › Lipoxygenase › Lipoxygenase › Lipoxygenase › Lipoxygenase 0.54 46.0 2.64e-01 100.0% 20.9%
4378054 7587.1.1.0 ↗ a/b three-layered sandwiches › Rossmann-like domain in carbohydrate phosphatases › Rossmann-like domain in carbohydrate phosphatases › Rossmann-like domain in carbohydrate phosphatases 0.53 40.0 3.21e-01 90.2% 50.4%
3574338 101.1.21.0 ↗ alpha arrays › HTH › HTH › HTH in T7 RNA polymerase 0.53 45.0 2.92e-01 100.0% 74.1%
3274730 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 37.0 2.95e-01 80.4% 61.6%
3402556 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.52 44.0 2.73e-01 98.0% 37.2%
3915698 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 32.0 2.81e-01 90.2% 36.5%
3651912 2487.1.1.1 ↗ a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › Cpn60_TCP1 0.50 41.0 3.00e-01 98.0% 57.6%