Back to structures

MT939242.1__QOI68874.1__phi9184_ORF055__00056

Bact-Vir

MT939242.1__QOI68874.1__phi9184_ORF055__00056

Identity

Accession:
MT939242 ↗
Kingdom:
phage

Quality

89.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-56
PDB
Domain cluster: representative
CATH (55)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.76 63.0 5.78e-01 100.0% 72.3%
2d9tA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 62.0 6.32e-01 100.0% 98.0%
1mhnA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 59.0 5.65e-01 100.0% 81.4%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.71 58.0 5.50e-01 100.0% 76.7%
2ej9A02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.70 56.0 5.72e-01 100.0% 91.8%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 60.0 5.46e-01 100.0% 79.4%
4krtB03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 59.0 5.44e-01 100.0% 98.5%
2jngA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.69 59.0 5.20e-01 100.0% 64.9%
6ghmC02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 58.0 5.39e-01 100.0% 89.1%
4cc2A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 57.0 5.37e-01 100.0% 92.1%
1ov3A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 57.0 5.61e-01 100.0% 98.2%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 55.0 5.23e-01 100.0% 79.0%
2pqhB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 56.0 5.24e-01 100.0% 83.1%
1udlA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 56.0 4.58e-01 100.0% 55.1%
2krsA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 56.0 5.33e-01 98.0% 98.3%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.66 53.0 4.88e-01 100.0% 69.7%
7u32F02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.65 55.0 5.50e-01 100.0% 100.0%
2nysA00 2.30.30.220 Mainly Beta › Roll › SH3 type barrels. › SspB-like 0.65 54.0 4.26e-01 100.0% 69.2%
4iimA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 54.0 5.26e-01 100.0% 93.0%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 52.0 5.29e-01 96.0% 100.0%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.64 55.0 4.83e-01 100.0% 70.1%
1gcqB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 53.0 5.19e-01 100.0% 94.7%
1x43A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 51.0 4.90e-01 100.0% 91.9%
1xreA02 3.55.40.20 Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain 0.62 43.0 3.40e-01 100.0% 33.0%
2iw3A05 2.40.50.990 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.61 50.0 4.01e-01 96.0% 60.6%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 50.0 4.62e-01 100.0% 86.8%
2fhdA02 2.30.30.810 Mainly Beta › Roll › SH3 type barrels. › 0.60 49.0 4.50e-01 100.0% 90.3%
2dn8A01 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.59 51.0 4.52e-01 96.0% 83.3%
2pmaA01 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.59 47.0 3.63e-01 90.0% 43.0%
6mv2A02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.58 40.0 3.18e-01 72.0% 94.3%
4hhvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 45.0 3.75e-01 94.0% 84.5%
1xovA03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 44.0 4.05e-01 92.0% 90.3%
2d9wA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 44.0 3.62e-01 94.0% 90.0%
2ou5A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 46.0 3.21e-01 94.0% 68.6%
2xzhA00 2.130.10.110 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Clathrin heavy-chain terminal domain 0.55 45.0 2.76e-01 96.0% 26.0%
5bn3A03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.55 42.0 3.92e-01 86.0% 81.5%
3ef2A02 3.30.460.70 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › 0.55 47.0 3.47e-01 100.0% 37.7%
1z6hA00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.54 44.0 3.97e-01 96.0% 84.7%
2fwvA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 45.0 3.09e-01 100.0% 72.1%
4rcnB02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.53 44.0 3.86e-01 94.0% 79.2%
2dhkA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 44.0 3.66e-01 100.0% 86.0%
1gpcA00 3.90.198.10 Alpha Beta › Alpha-Beta Complex › Replication Fork Single-Stranded DNA Binding Protein › Replication Fork Single-Stranded Dna Binding Protein 0.53 45.0 2.99e-01 100.0% 49.5%
3cp3A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 42.0 3.24e-01 94.0% 81.1%
2nvnA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.52 41.0 3.30e-01 98.0% 76.7%
4eq8A00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.52 42.0 3.11e-01 100.0% 43.7%
3r5lA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 42.0 3.38e-01 100.0% 50.9%
2w5eA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 39.0 3.59e-01 100.0% 60.8%
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.51 43.0 3.86e-01 100.0% 69.7%
4l68A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 41.0 3.34e-01 94.0% 94.5%
2ol5A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 42.0 2.98e-01 100.0% 29.0%
4yarA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 35.0 2.77e-01 100.0% 30.9%
3htyA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.51 41.0 3.48e-01 96.0% 97.9%
2a2jA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 41.0 2.88e-01 100.0% 26.1%
2o8lA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.50 41.0 3.36e-01 100.0% 47.5%
2e5yA01 2.60.15.10 Mainly Beta › Sandwich › ATP Synthase; domain 1 › F0F1 ATP synthase delta/epsilon subunit, N-terminal 0.50 40.0 3.52e-01 100.0% 84.1%
ECOD (76)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3738126 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.81 69.0 5.70e-01 100.0% 53.3%
3519774 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.80 70.0 5.45e-01 100.0% 46.7%
3617355 4.1.1.348 beta barrels › SH3 › SH3 › SH3 › SMN_Tudor, SMN_YG-box 0.77 64.0 5.27e-01 100.0% 50.5%
4209798 4.15.1.2 beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.77 68.0 5.68e-01 100.0% 72.9%
4964141 4.15.1.2 beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.76 68.0 5.58e-01 100.0% 71.1%
4524466 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.76 63.0 5.75e-01 100.0% 68.6%
5026284 4.15.1.2 beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.76 67.0 5.41e-01 100.0% 64.2%
3999725 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 63.0 5.35e-01 100.0% 56.5%
4888987 4.1.1.6 beta barrels › SH3 › SH3 › SH3 › KOW,40S_S4_C 0.75 66.0 5.89e-01 100.0% 71.0%
4354770 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.75 65.0 5.84e-01 100.0% 70.0%
3525406 4.1.1.43 beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.75 62.0 4.88e-01 100.0% 43.6%
4420173 4.1.1.43 beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.75 62.0 5.52e-01 100.0% 64.0%
3579591 4.1.1.43 beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.75 62.0 6.12e-01 100.0% 87.3%
5029655 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 65.0 6.11e-01 100.0% 81.7%
3195050 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.74 62.0 5.07e-01 100.0% 50.5%
4644007 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.74 64.0 6.10e-01 100.0% 83.1%
5069062 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.74 64.0 6.13e-01 100.0% 83.1%
4105328 4.1.1.43 beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.74 62.0 5.73e-01 100.0% 73.8%
4484893 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 63.0 5.85e-01 100.0% 75.4%
4138563 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 63.0 5.82e-01 100.0% 75.4%
3936885 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 62.0 5.70e-01 98.0% 73.8%
4621153 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 63.0 5.99e-01 100.0% 81.7%
4467360 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 62.0 5.90e-01 100.0% 81.7%
4286562 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.72 64.0 5.87e-01 100.0% 76.9%
4118552 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.72 62.0 5.48e-01 100.0% 70.7%
4941620 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 61.0 5.79e-01 100.0% 81.7%
4141828 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.71 61.0 5.44e-01 100.0% 74.3%
4168737 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 61.0 5.44e-01 100.0% 74.3%
3416068 4.1.1.187 beta barrels › SH3 › SH3 › SH3 › DIRP 0.71 62.0 4.40e-01 100.0% 33.5%
3910433 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 59.0 5.50e-01 100.0% 73.8%
3398023 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 60.0 4.19e-01 100.0% 30.3%
3656401 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 60.0 5.32e-01 100.0% 66.7%
3721787 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 61.0 5.15e-01 100.0% 76.5%
4183853 4.1.1.435 beta barrels › SH3 › SH3 › SH3 › PF29216 0.69 60.0 5.42e-01 100.0% 85.7%
3405627 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 56.0 4.66e-01 100.0% 50.5%
3712451 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 58.0 4.47e-01 100.0% 41.6%
5080336 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 60.0 5.54e-01 100.0% 78.1%
3714156 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 58.0 4.97e-01 100.0% 61.2%
4031435 4.1.1.143 beta barrels › SH3 › SH3 › SH3 › TagH_SH3-like 0.68 59.0 5.46e-01 100.0% 84.6%
3888226 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.67 57.0 5.10e-01 100.0% 76.0%
4359892 4.1.1.96 beta barrels › SH3 › SH3 › SH3 › Hfq 0.67 55.0 4.73e-01 100.0% 57.5%
1263519 4.1.1.96 beta barrels › SH3 › SH3 › SH3 › Hfq 0.67 54.0 5.13e-01 100.0% 74.2%
3281271 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.67 56.0 4.75e-01 100.0% 65.6%
3931418 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 57.0 5.46e-01 100.0% 90.0%
4650162 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 56.0 5.23e-01 100.0% 92.3%
4034320 4.1.1.398 beta barrels › SH3 › SH3 › SH3 › YolD 0.66 58.0 5.28e-01 100.0% 83.8%
3408330 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 55.0 4.54e-01 100.0% 52.0%
3286662 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.66 56.0 4.59e-01 100.0% 53.0%
4069560 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 56.0 5.01e-01 100.0% 78.7%
5015352 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 57.0 4.87e-01 100.0% 62.7%
4574546 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.65 57.0 5.24e-01 100.0% 80.0%
5024227 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 56.0 5.29e-01 100.0% 87.3%
5033892 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 56.0 5.21e-01 100.0% 80.0%
4071824 4.17.1.1 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.65 55.0 4.92e-01 100.0% 70.7%
3204891 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 54.0 4.81e-01 100.0% 97.3%
3576940 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 56.0 3.65e-01 100.0% 28.0%
3246086 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 54.0 4.49e-01 100.0% 54.7%
3712219 4.1.1.19 beta barrels › SH3 › SH3 › SH3 › LSM 0.64 54.0 5.08e-01 100.0% 76.9%
3482868 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.64 53.0 5.22e-01 100.0% 100.0%
3564972 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 51.0 4.78e-01 100.0% 74.3%
5005510 325.1.7.1 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Biotin_lipoyl 0.60 50.0 4.06e-01 94.0% 65.3%
5046498 219.1.1.51 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39_2 0.59 50.0 3.57e-01 100.0% 35.8%
4989491 3174.2.1.0 beta barrels › Ribosomal protein L14-like › Barrel domain in flagellar protein FlgA › Barrel domain in flagellar protein FlgA 0.58 46.0 4.31e-01 100.0% 82.9%
4136160 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.58 48.0 3.90e-01 94.0% 75.0%
163634 1.1.5.30 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_oxase_2 0.56 46.0 3.21e-01 94.0% 68.6%
3470429 325.1.7.1 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Biotin_lipoyl 0.56 47.0 4.59e-01 94.0% 90.9%
3687295 325.1.7.1 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Biotin_lipoyl 0.56 48.0 3.90e-01 100.0% 75.0%
2141735 219.1.1.69 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › GtgE 0.55 48.0 3.22e-01 100.0% 25.6%
3827152 325.1.7.1 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Biotin_lipoyl 0.55 46.0 3.93e-01 96.0% 73.8%
3472100 325.1.7.1 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Biotin_lipoyl 0.54 44.0 3.85e-01 94.0% 77.5%
1240248 325.1.7.1 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Biotin_lipoyl 0.54 46.0 4.16e-01 98.0% 85.9%
3969056 325.1.7.1 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Biotin_lipoyl 0.53 43.0 3.90e-01 96.0% 92.0%
4674798 3430.1.1.1 a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD 0.52 43.0 3.46e-01 100.0% 44.5%
4431199 1.1.5.9 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx,PNP_phzG_C 0.52 42.0 2.93e-01 100.0% 25.5%
4129418 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.51 41.0 3.21e-01 100.0% 40.0%
4554209 3430.1.1.1 a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD 0.50 40.0 3.33e-01 100.0% 45.5%