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MW006476.1__QPI14365.1__GECvBGOT_gp030__00030

Bact-Vir

MW006476.1__QPI14365.1__GECvBGOT_gp030__00030

Identity

Accession:
MW006476 ↗
Kingdom:
phage

Quality

68.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-45
PDB
Domain cluster: representative
CATH (57)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2cveA02 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.78 60.0 5.14e-01 85.4% 90.9%
7npaA02 3.30.70.3340 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.77 59.0 4.67e-01 85.4% 75.3%
4jdmA02 6.10.250.2680 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.70 41.0 3.52e-01 100.0% 36.5%
4nzrM01 3.30.1370.200 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.69 38.0 2.96e-01 100.0% 25.0%
4e1oA03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.68 51.0 3.96e-01 85.4% 94.9%
2anrA02 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.66 49.0 4.15e-01 82.9% 90.7%
1js3A03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.66 50.0 3.90e-01 85.4% 95.9%
3fdjA03 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.65 48.0 3.53e-01 85.4% 30.5%
2yweA03 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.65 50.0 4.09e-01 87.8% 85.4%
2kyyA00 3.30.950.30 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Schlafen, AAA domain 0.65 46.0 3.12e-01 78.0% 54.2%
2jkgA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.62 45.0 3.15e-01 85.4% 24.2%
1c7uA01 3.40.1810.10 Alpha Beta › 3-Layer(aba) Sandwich › SRF-like › Transcription factor, MADS-box 0.62 37.0 3.26e-01 100.0% 36.5%
2nrjA01 1.20.1170.10 Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › 0.62 45.0 2.76e-01 97.6% 10.9%
2gukA00 3.30.2190.10 Alpha Beta › 2-Layer Sandwich › PG1857-like › PG1857-like 0.62 45.0 3.41e-01 80.5% 36.0%
1yx1A00 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.61 43.0 2.67e-01 75.6% 95.2%
7wu7501 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.61 45.0 3.36e-01 87.8% 43.7%
3tcaA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.61 46.0 3.70e-01 87.8% 51.1%
2y3aA01 3.10.20.770 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.61 49.0 3.00e-01 92.7% 19.3%
4qxaB00 2.30.29.230 Mainly Beta › Roll › PH-domain like › 0.60 47.0 3.34e-01 92.7% 28.6%
2wweA01 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.59 44.0 3.44e-01 87.8% 70.2%
1kyzA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 35.0 2.69e-01 100.0% 22.3%
5jk0B01 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.59 40.0 2.61e-01 70.7% 52.6%
3r0aA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 41.0 2.97e-01 73.2% 87.5%
2oarB00 1.10.1200.120 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Large-conductance mechanosensitive channel, MscL; domain 1 0.59 39.0 2.73e-01 100.0% 22.4%
1z9hA02 6.20.200.30 Special › Other non-globular › Defensin A-like › 0.59 39.0 3.93e-01 78.0% 67.4%
1yj7B01 3.30.70.1530 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hypothetical protein rpa1041 0.59 41.0 3.64e-01 80.5% 81.7%
2y9wA00 1.10.1280.10 Mainly Alpha › Orthogonal Bundle › di-copper center containing domain from catechol oxidase › Di-copper center containing domain from catechol oxidase 0.58 40.0 2.32e-01 70.7% 41.2%
3gqhA02 4.10.80.40 Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › succinate dehydrogenase protein domain 0.58 40.0 4.07e-01 73.2% 82.5%
4a55A01 3.10.20.770 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.58 47.0 2.90e-01 100.0% 21.6%
1bd3A00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.58 40.0 2.51e-01 73.2% 48.7%
4gxbA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.58 45.0 3.54e-01 92.7% 94.8%
2uvaG11 6.10.60.10 Special › Helix non-globular › Hydrophobic Seed Protein › 0.57 39.0 3.67e-01 78.0% 54.5%
1hbxA01 3.40.1810.10 Alpha Beta › 3-Layer(aba) Sandwich › SRF-like › Transcription factor, MADS-box 0.57 39.0 3.26e-01 70.7% 49.3%
1ttnA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.57 43.0 3.70e-01 90.2% 70.3%
4esbA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 39.0 3.04e-01 75.6% 78.6%
1gcbA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.56 40.0 2.36e-01 80.5% 8.3%
7kfuC02 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.56 40.0 2.49e-01 97.6% 13.3%
2byvE05 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.56 43.0 3.66e-01 92.7% 73.4%
7r5mA01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.56 41.0 2.67e-01 82.9% 88.8%
5ek8A01 2.60.40.3330 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 42.0 3.22e-01 97.6% 73.8%
3uoxB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 44.0 2.70e-01 92.7% 52.5%
3q9tA02 3.30.560.10 Alpha Beta › 2-Layer Sandwich › Glucose Oxidase; domain 3 › Glucose Oxidase, domain 3 0.54 43.0 2.63e-01 97.6% 70.8%
4k7cA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.54 41.0 2.42e-01 87.8% 23.1%
2v79A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 36.0 2.76e-01 73.2% 63.5%
2mkyA00 3.30.70.1530 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hypothetical protein rpa1041 0.54 38.0 3.54e-01 80.5% 100.0%
5lp7E01 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.53 37.0 2.43e-01 73.2% 29.6%
1hp7A01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.53 39.0 3.06e-01 80.5% 56.8%
4wksC02 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.53 37.0 3.15e-01 75.6% 45.3%
3foeA02 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.53 38.0 3.28e-01 78.0% 49.3%
1nltA03 2.60.260.20 Mainly Beta › Sandwich › HSP40/DNAj peptide-binding domain › Urease metallochaperone UreE, N-terminal domain 0.53 37.0 3.14e-01 80.5% 64.6%
1gg1A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.53 41.0 2.37e-01 82.9% 20.6%
2fauA01 2.60.40.640 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 42.0 3.00e-01 100.0% 66.2%
1c0gA03 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.52 36.0 2.98e-01 80.5% 40.2%
4gs5A01 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.52 38.0 2.32e-01 78.0% 13.1%
1qmeA01 3.90.1310.10 Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) 0.52 35.0 2.79e-01 75.6% 30.2%
2r6fA04 1.10.8.280 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › ABC transporter ATPase domain-like 0.50 44.0 3.15e-01 100.0% 41.5%
3uw8A02 1.10.420.10 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 2 › Peroxidase, domain 2 0.50 37.0 2.65e-01 82.9% 89.6%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3873803 327.11.2.27 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_Vigilin 0.70 50.0 3.93e-01 78.0% 77.8%
5051534 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.68 38.0 2.45e-01 100.0% 11.9%
None 0.67 45.0 2.62e-01 75.6% 6.8%
5068497 101.1.2.110 alpha arrays › HTH › HTH › winged helix domain › HTH_IclR 0.67 38.0 2.75e-01 100.0% 19.5%
4011414 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.67 38.0 2.38e-01 100.0% 10.2%
3641356 221.1.1.44 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Rad60-SLD 0.64 53.0 4.43e-01 95.1% 78.7%
3238035 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.63 48.0 4.50e-01 85.4% 68.0%
3974474 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.63 38.0 2.94e-01 100.0% 27.8%
3985490 192.2.1.5 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › DUF4376 0.63 45.0 3.34e-01 85.4% 27.4%
3934420 5001.1.1.44 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srv 0.63 46.0 2.95e-01 80.5% 44.8%
3501234 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.62 42.0 2.50e-01 75.6% 8.5%
3453248 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.62 47.0 4.34e-01 85.4% 100.0%
3783976 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.60 45.0 3.66e-01 92.7% 40.0%
3723153 2484.1.1.2 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin 0.59 41.0 2.39e-01 75.6% 7.2%
3998381 2004.1.1.432 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA, Rad17 0.59 39.0 2.45e-01 78.0% 11.4%
3712687 67.1.1.1 beta sandwiches › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › DnaJ_C 0.58 41.0 3.08e-01 78.0% 47.0%
3700547 109.4.1.22 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N 0.58 40.0 2.21e-01 70.7% 42.0%
4615793 101.1.2.92 alpha arrays › HTH › HTH › winged helix domain › HTH_11 0.58 41.0 3.15e-01 75.6% 44.4%
4025375 2008.1.1.86 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RAP 0.57 41.0 2.94e-01 75.6% 96.5%
4944834 3625.1.1.0 alpha bundles › CRISPR RNA silencing complex Cmr2 subunit second helical domain › CRISPR RNA silencing complex Cmr2 subunit second helical domain › CRISPR RNA silencing complex Cmr2 subunit second helical domain 0.57 40.0 2.92e-01 73.2% 27.3%
3520913 5054.1.1.8 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 0.57 43.0 2.42e-01 80.5% 30.6%
3766042 221.1.1.76 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 0.57 42.0 3.29e-01 90.2% 51.8%
3595427 67.1.1.0 beta sandwiches › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain 0.57 40.0 3.26e-01 80.5% 56.7%
5054779 2006.1.4.3 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › NYN 0.56 41.0 2.91e-01 80.5% 85.0%
3261706 67.1.1.1 beta sandwiches › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › DnaJ_C 0.56 39.0 3.31e-01 78.0% 71.2%
3200582 101.1.2.111 alpha arrays › HTH › HTH › winged helix domain › RQC 0.56 37.0 2.76e-01 70.7% 45.6%
4513294 67.1.1.1 beta sandwiches › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › DnaJ_C 0.56 38.0 3.25e-01 75.6% 65.0%
3256058 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.55 40.0 3.14e-01 92.7% 45.6%
3290062 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.55 43.0 2.62e-01 87.8% 20.5%
3656669 207.1.1.245 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_6, LRR_At5g56370, DUF7885 0.54 36.0 2.02e-01 70.7% 4.9%
3717686 67.1.1.1 beta sandwiches › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › DnaJ_C 0.54 38.0 2.89e-01 78.0% 49.1%
3590781 101.1.2.92 alpha arrays › HTH › HTH › winged helix domain › HTH_11 0.54 37.0 2.98e-01 75.6% 45.6%
3687833 5073.1.1.18 alpha bundles › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain M › Hydrolase 0.54 40.0 2.28e-01 85.4% 56.2%
3547409 604.1.1.153 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › DUF4455 0.54 41.0 2.60e-01 80.5% 79.5%
4441043 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.54 39.0 2.64e-01 78.0% 42.5%
3508428 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.54 37.0 2.49e-01 75.6% 23.3%
4979815 101.1.2.136 alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.54 37.0 2.95e-01 73.2% 83.3%
4495624 67.1.1.1 beta sandwiches › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › DnaJ_C 0.53 37.0 2.91e-01 80.5% 43.6%
185807 67.1.1.1 beta sandwiches › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › DnaJ_C 0.53 39.0 2.96e-01 82.9% 41.7%
4928248 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 38.0 2.71e-01 78.0% 30.0%
3592646 67.1.1.0 beta sandwiches › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain 0.53 37.0 2.86e-01 80.5% 51.3%
4505583 67.1.1.1 beta sandwiches › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › DnaJ_C 0.53 37.0 3.06e-01 80.5% 54.4%
3821553 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.53 37.0 3.53e-01 75.6% 72.0%
3636403 4001.1.1.4 a+b duplicates or obligate multimers › a+b domain in cullin-like proteins › a+b domain in cullin-like proteins › a+b domain in cullin-like proteins › Cullin_AB 0.52 41.0 3.10e-01 100.0% 75.4%
3695634 7573.1.1.4 a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › UPRTase 0.52 36.0 2.29e-01 73.2% 68.9%
4023956 3871.1.1.1 alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN 0.52 40.0 3.00e-01 90.2% 83.1%
4976267 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.52 37.0 2.37e-01 82.9% 33.3%
4026519 3871.1.1.1 alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN 0.52 41.0 2.95e-01 95.1% 78.5%
5000362 306.3.1.1 a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › SUI1 0.51 38.0 3.09e-01 90.2% 60.0%
3853273 327.11.2.27 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_Vigilin 0.51 37.0 3.55e-01 80.5% 76.0%
3782687 2003.1.5.63 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › CARME 0.51 40.0 2.38e-01 100.0% 50.0%
3252037 109.3.1.20 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank_2,Ank_4 0.51 34.0 2.31e-01 75.6% 15.1%
3305417 4232.1.1.0 few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28 0.50 34.0 3.24e-01 73.2% 56.4%