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MW006477.1__QPI14653.1__GECvBMG_gp109c__00109

Bact-Vir

MW006477.1__QPI14653.1__GECvBMG_gp109c__00109

Identity

Accession:
MW006477 ↗
Kingdom:
phage

Quality

85.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Seunavirus› Salmonella_phage_GEC_vB_MG

TaxID: 2777376

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-36
PDB
Domain cluster: representative
CATH (55)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1cx8A01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.78 65.0 3.78e-01 97.2% 27.0%
3ksrA01 6.20.370.100 Special › Other non-globular › Rhinovirus 14, subunit 4 › 0.76 51.0 5.50e-01 72.2% 100.0%
2v8qB00 6.20.250.60 Special › Other non-globular › Double Stranded RNA Binding Domain › 0.75 50.0 4.03e-01 80.6% 34.2%
1jpyX00 2.10.90.10 Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines 0.72 56.0 4.05e-01 94.4% 32.5%
1xeuA02 2.60.40.1220 Mainly Beta › Sandwich › Immunoglobulin-like › 0.69 50.0 4.08e-01 88.9% 38.6%
3j7aV00 2.40.50.1000 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.68 53.0 3.60e-01 91.7% 78.8%
2hv2A01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.68 51.0 3.86e-01 86.1% 65.3%
2fdoA00 3.30.1970.10 Alpha Beta › 2-Layer Sandwich › AF2331-like fold › AF2331-like 0.67 50.0 3.81e-01 83.3% 33.3%
6gdxA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.66 48.0 3.58e-01 83.3% 67.3%
3cgbA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.66 50.0 3.67e-01 88.9% 30.9%
2p8jA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.65 50.0 3.23e-01 91.7% 40.3%
3qt2A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 53.0 3.87e-01 97.2% 55.8%
3ub1D02 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 45.0 3.32e-01 83.3% 28.1%
2ek0A00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.63 49.0 3.86e-01 94.4% 37.8%
3en2A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 45.0 3.61e-01 91.7% 38.5%
4noiA01 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.61 46.0 3.52e-01 86.1% 31.1%
3ce8A00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 46.0 3.56e-01 86.1% 67.4%
2z13A00 2.30.29.170 Mainly Beta › Roll › PH-domain like › 0.61 46.0 3.49e-01 100.0% 31.6%
2p35A01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.61 46.0 3.06e-01 91.7% 19.5%
2bs2B01 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.61 48.0 3.52e-01 86.1% 29.2%
3k8aB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 45.0 3.52e-01 97.2% 37.9%
1v1qA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 46.0 3.54e-01 100.0% 37.3%
3ddcB00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.60 42.0 3.01e-01 80.6% 29.3%
6lofA00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.60 45.0 3.13e-01 91.7% 21.0%
1y8cA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.60 43.0 3.85e-01 83.3% 50.0%
6pfzD02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.60 46.0 2.82e-01 97.2% 13.2%
2xzmJ00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.59 45.0 3.34e-01 88.9% 77.1%
2k6vA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.59 42.0 2.78e-01 80.6% 81.4%
5cm2Z00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.59 44.0 2.92e-01 86.1% 17.9%
2hqlA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 45.0 3.55e-01 86.1% 34.1%
2hj1A00 3.10.20.280 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RnfH-like 0.58 41.0 3.27e-01 91.7% 31.2%
7b1cD01 2.10.90.10 Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines 0.58 45.0 3.61e-01 94.4% 48.9%
2ql8A00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.58 49.0 3.32e-01 100.0% 45.7%
2g2sA00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.57 40.0 3.58e-01 83.3% 46.9%
3g2eB00 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.56 40.0 2.57e-01 88.9% 15.1%
6gp1A00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.56 39.0 3.46e-01 83.3% 46.2%
6tmfM00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.56 43.0 3.36e-01 100.0% 46.1%
2qsdA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.55 40.0 3.45e-01 80.6% 40.3%
4rx6D00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 45.0 3.32e-01 100.0% 98.1%
1p1lA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 43.0 3.22e-01 94.4% 100.0%
3p9aF00 1.10.132.80 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.54 39.0 2.88e-01 91.7% 56.7%
3o2iA00 3.30.70.2710 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 43.0 3.25e-01 91.7% 67.7%
4inaA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.54 38.0 2.66e-01 100.0% 20.3%
2c42A03 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.54 37.0 2.37e-01 77.8% 13.2%
7w3rB01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.54 37.0 2.33e-01 94.4% 52.4%
4mh4A02 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.52 42.0 3.22e-01 100.0% 63.8%
3ttqA03 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.52 36.0 2.38e-01 94.4% 13.7%
4f0aB02 3.30.2460.20 Alpha Beta › 2-Layer Sandwich › Endo-n-acetylneuraminidase fold › Wnt (Wingless and Int-1), C-terminal domain 0.52 38.0 3.40e-01 97.2% 54.4%
3hm2A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 38.0 2.69e-01 100.0% 21.1%
3aonA00 1.10.287.3240 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.52 36.0 2.46e-01 83.3% 17.0%
5axmB00 3.30.70.3000 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) 0.51 38.0 2.49e-01 94.4% 66.1%
1j2vA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 40.0 3.08e-01 91.7% 70.3%
1l3iA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 40.0 2.73e-01 97.2% 19.5%
3bzwF00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.51 36.0 2.40e-01 100.0% 17.3%
2b9dA01 3.30.160.330 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.50 37.0 3.63e-01 94.4% 61.5%
ECOD (71)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5056319 177.1.1.0 ↗ alpha bundles › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease 0.84 72.0 4.56e-01 100.0% 21.1%
4281699 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 58.0 4.60e-01 83.3% 42.7%
5052927 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.78 64.0 4.36e-01 94.4% 25.2%
1555393 2.1.1.4 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17 0.78 57.0 3.90e-01 80.6% 23.8%
5044379 2004.1.1.19 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.77 60.0 3.84e-01 88.9% 17.8%
4972556 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.77 58.0 4.39e-01 86.1% 35.3%
5040847 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.75 53.0 3.07e-01 75.0% 9.2%
3404903 5001.1.1.0 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.74 61.0 3.91e-01 100.0% 23.1%
3474593 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.73 56.0 3.75e-01 91.7% 23.1%
3706357 298.1.1.0 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 0.73 62.0 3.76e-01 97.2% 15.6%
3287591 2004.1.1.5 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.73 55.0 3.00e-01 86.1% 5.3%
3691484 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.73 58.0 3.60e-01 97.2% 15.2%
3236416 5001.1.1.41 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw 0.72 60.0 3.46e-01 100.0% 14.4%
3251044 242.1.1.2 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_2 0.72 54.0 3.58e-01 83.3% 19.5%
3733648 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.72 57.0 3.63e-01 88.9% 47.2%
4022589 171.1.1.1 ↗ alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 0.71 58.0 3.62e-01 100.0% 58.2%
4856794 304.112.1.0 ↗ a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain 0.71 48.0 3.86e-01 94.4% 33.8%
5035417 3010.1.1.0 ↗ a/b three-layered sandwiches › C-terminal subdomain in Lon-related proteases catalytic domains › C-terminal subdomain in Lon-related proteases catalytic domains › C-terminal subdomain in Lon-related proteases catalytic domains 0.70 51.0 3.76e-01 94.4% 27.4%
3397147 11.1.1.9 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N 0.70 54.0 3.66e-01 100.0% 22.1%
4156749 3234.1.1.2 ↗ a+b two layers › GerBC protein › GerBC protein › GerBC protein › Spore_GerAC, Spore_GerAC_N 0.70 45.0 2.67e-01 97.2% 8.1%
3496677 3315.1.1.1 ↗ a+b complex topology › Insertion domain in O-GlcNAc transferase › Insertion domain in O-GlcNAc transferase › Insertion domain in O-GlcNAc transferase › Glyco_transf_41 0.70 55.0 4.06e-01 100.0% 47.8%
3264140 3082.1.1.0 ↗ extended segments › C-terminal region of nonsense mediated decay factor UPF2 › C-terminal region of nonsense mediated decay factor UPF2 › C-terminal region of nonsense mediated decay factor UPF2 0.69 51.0 5.20e-01 86.1% 91.4%
3190012 883.1.1.12 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › DUF5923 0.69 54.0 3.41e-01 100.0% 44.0%
5019603 3010.1.1.0 ↗ a/b three-layered sandwiches › C-terminal subdomain in Lon-related proteases catalytic domains › C-terminal subdomain in Lon-related proteases catalytic domains › C-terminal subdomain in Lon-related proteases catalytic domains 0.69 49.0 3.80e-01 83.3% 32.6%
4979109 2006.1.4.56 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › DUF5615 0.68 54.0 3.86e-01 94.4% 42.9%
5050213 192.2.1.87 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › ATP-synt_D 0.67 51.0 3.25e-01 83.3% 15.8%
3701882 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.67 47.0 3.61e-01 100.0% 29.5%
4027856 67.1.1.1 ↗ beta sandwiches › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › DnaJ_C 0.67 53.0 4.27e-01 91.7% 41.2%
3912477 5001.1.1.5 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_3 0.67 50.0 3.06e-01 100.0% 14.7%
4351239 4967.1.1.6 ↗ alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › Intron_maturas2 0.66 51.0 3.70e-01 97.2% 69.2%
4189845 4964.1.1.0 ↗ alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I 0.66 53.0 3.37e-01 100.0% 27.7%
None — 0.65 46.0 3.35e-01 83.3% 24.0%
4777486 11.1.1.1386 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF28858, PF28861 0.64 51.0 3.66e-01 94.4% 28.9%
4989866 205.1.1.17 ↗ a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_11 0.64 48.0 3.12e-01 100.0% 50.0%
3725152 376.1.3.11 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › zf-HC5HC2H_2 0.64 45.0 3.27e-01 83.3% 24.0%
3255418 2011.1.1.8 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M28 0.63 50.0 2.94e-01 100.0% 26.2%
3740450 328.1.1.3 ↗ a+b two layers › IF3-like › AlbA-like › AlbA-like › Rpp20 0.62 47.0 3.81e-01 94.4% 37.8%
4860339 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 50.0 3.84e-01 91.7% 37.1%
3761138 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.62 46.0 3.48e-01 94.4% 66.1%
4938548 3010.1.1.2 ↗ a/b three-layered sandwiches › C-terminal subdomain in Lon-related proteases catalytic domains › C-terminal subdomain in Lon-related proteases catalytic domains › C-terminal subdomain in Lon-related proteases catalytic domains › Lon_C 0.62 48.0 3.45e-01 94.4% 59.2%
3982740 5086.1.1.190 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › OEP 0.61 49.0 3.23e-01 97.2% 17.5%
3968270 3103.1.1.2 ↗ alpha arrays › Uncharacterized protein yqbN › Uncharacterized protein yqbN › Uncharacterized protein yqbN › Phage_TAC_13 0.61 47.0 3.56e-01 94.4% 32.7%
4997962 304.139.1.2 ↗ a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › RAMPs 0.61 47.0 2.93e-01 94.4% 14.2%
3717787 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.61 43.0 2.51e-01 77.8% 6.9%
4973867 314.1.1.0 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases 0.60 43.0 3.04e-01 91.7% 21.3%
3513729 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.60 45.0 2.55e-01 91.7% 15.8%
4027772 213.1.1.10 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Leu_Phe_trans 0.60 51.0 3.09e-01 97.2% 67.1%
3592605 298.1.1.0 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 0.59 45.0 2.98e-01 88.9% 18.3%
5070432 314.1.1.11 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA_synthFbeta 0.59 42.0 2.90e-01 91.7% 18.3%
4946616 512.1.1.2 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.59 43.0 3.52e-01 94.4% 80.0%
4466937 11.1.1.248 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › bMG6 0.59 42.0 3.13e-01 94.4% 26.2%
3728856 171.1.1.9 ↗ alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3, Ribonucleas_3_3 0.58 42.0 2.78e-01 97.2% 72.4%
10062 2007.5.1.8 ↗ a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL_2 0.58 43.0 2.71e-01 88.9% 29.8%
4541164 3926.1.1.1 ↗ alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D 0.57 41.0 2.62e-01 80.6% 13.6%
3291254 2004.1.1.286 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › TraG-D_C 0.56 43.0 2.45e-01 97.2% 10.9%
3675789 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 40.0 3.39e-01 77.8% 48.6%
4009783 205.1.1.0 ↗ a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin 0.56 44.0 2.91e-01 100.0% 22.1%
5045252 878.1.1.1 ↗ a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 0.56 41.0 3.17e-01 91.7% 30.0%
4187457 4967.1.1.6 ↗ alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › Intron_maturas2 0.56 41.0 3.12e-01 100.0% 67.7%
5031862 304.48.1.0 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.56 46.0 3.08e-01 88.9% 47.6%
4197190 812.1.1.1 ↗ a+b duplicates or obligate multimers › MinE-like › Cell division protein MinE topological specificity domain › Cell division protein MinE topological specificity domain › MinE 0.55 40.0 3.59e-01 100.0% 51.7%
3788285 395.1.1.4 ↗ few secondary structure elements › Midkine-related › Midkine-related › Midkine-related › Flocculin_t3 0.55 44.0 4.00e-01 91.7% 74.0%
3734626 171.1.1.1 ↗ alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 0.55 38.0 2.59e-01 100.0% 40.0%
5034346 207.2.1.13 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD 0.54 42.0 2.54e-01 97.2% 10.2%
5007619 3010.1.1.2 ↗ a/b three-layered sandwiches › C-terminal subdomain in Lon-related proteases catalytic domains › C-terminal subdomain in Lon-related proteases catalytic domains › C-terminal subdomain in Lon-related proteases catalytic domains › Lon_C 0.54 40.0 3.08e-01 91.7% 31.8%
5075588 512.1.1.0 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) 0.54 42.0 3.40e-01 100.0% 48.9%
3967497 5085.1.1.1 ↗ a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › OEP 0.54 41.0 2.41e-01 91.7% 10.8%
3591159 376.1.3.11 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › zf-HC5HC2H_2 0.52 39.0 2.76e-01 91.7% 23.2%
329607 5084.5.1.4 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › OprD 0.52 35.0 3.43e-01 91.7% 78.2%
4985875 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.52 41.0 3.70e-01 86.1% 66.0%
1411401 304.48.1.7 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Flu_PB1 0.51 37.0 2.17e-01 94.4% 7.2%