←Back to structures
MW009675.1__QWX10227.1__vBVpPBT1011_0028__00028
Bact-VirMW009675.1__QWX10227.1__vBVpPBT1011_0028__00028
Identity
- Accession:
- MW009675 ↗
- Kingdom:
- phage
Quality
91.7
mean pLDDT
Taxonomy
TaxID: 2799672
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-53
Domain cluster:
representative
CATH (34)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3hryA01 | 3.40.1620.10 | Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › YefM-like domain | 0.87 | 73.0 | 7.34e-01 | 93.9% | 95.9% |
| 2odkA00 | 3.40.1620.10 | Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › YefM-like domain | 0.87 | 77.0 | 7.72e-01 | 98.0% | 98.0% |
| 2a6qA01 | 3.40.1620.10 | Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › YefM-like domain | 0.79 | 54.0 | 5.71e-01 | 73.5% | 88.4% |
| 5hsgA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.62 | 41.0 | 2.90e-01 | 77.6% | 21.3% |
| 2gjwC01 | 3.40.1350.150 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.62 | 45.0 | 3.29e-01 | 79.6% | 29.3% |
| 2zyzC00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.62 | 48.0 | 3.92e-01 | 87.8% | 53.1% |
| 3ajvC02 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.59 | 44.0 | 3.74e-01 | 85.7% | 56.0% |
| 2gmoA01 | 3.30.30.90 | Alpha Beta › 2-Layer Sandwich › Defensin A-like › Polymerase Basic Protein 2, C-terminal domain | 0.58 | 36.0 | 3.60e-01 | 75.5% | 57.7% |
| 2azpA02 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.57 | 43.0 | 3.07e-01 | 83.7% | 43.9% |
| 4j3cA01 | 2.40.240.20 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 | 0.57 | 41.0 | 3.79e-01 | 77.6% | 73.4% |
| 3hl6A01 | 3.30.1300.50 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Putative mobile pathogenicity island, N-terminal domain | 0.57 | 42.0 | 3.74e-01 | 77.6% | 64.9% |
| 4hg0A01 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.56 | 41.0 | 3.02e-01 | 79.6% | 27.2% |
| 1fi4A02 | 3.30.70.890 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain | 0.56 | 43.0 | 2.98e-01 | 89.8% | 59.1% |
| 2gs8A02 | 3.30.70.890 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain | 0.56 | 45.0 | 3.31e-01 | 89.8% | 66.4% |
| 3orgA02 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.56 | 43.0 | 3.29e-01 | 87.8% | 36.5% |
| 3ieyB00 | 3.40.1350.150 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.55 | 40.0 | 3.00e-01 | 85.7% | 32.2% |
| 6xzqA01 | 3.40.91.90 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain | 0.55 | 39.0 | 2.81e-01 | 83.7% | 24.1% |
| 2l6oA01 | 2.40.10.320 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Uncharacterised protein PF13642 yp_926445, N-terminal domain | 0.55 | 39.0 | 3.55e-01 | 79.6% | 66.7% |
| 8gpsA02 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.54 | 40.0 | 3.18e-01 | 79.6% | 37.4% |
| 5dm6S01 | 2.40.240.10 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P | 0.54 | 40.0 | 3.52e-01 | 87.8% | 100.0% |
| 1vhkA01 | 2.40.240.20 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 | 0.54 | 39.0 | 3.58e-01 | 83.7% | 87.7% |
| 3pc3A03 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.53 | 46.0 | 3.37e-01 | 100.0% | 58.3% |
| 3hf7A00 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.53 | 43.0 | 3.31e-01 | 98.0% | 66.1% |
| 2p4zA00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.52 | 42.0 | 2.71e-01 | 95.9% | 73.1% |
| 1tueD00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 35.0 | 2.42e-01 | 71.4% | 28.7% |
| 1vr9A01 | 3.90.1280.20 | Alpha Beta › Alpha-Beta Complex › CBS domain Like › | 0.52 | 37.0 | 3.47e-01 | 79.6% | 62.5% |
| 3ltoA02 | 3.30.70.890 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain | 0.51 | 41.0 | 3.07e-01 | 89.8% | 72.4% |
| 6o38A04 | 2.60.120.1230 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 39.0 | 3.37e-01 | 89.8% | 94.4% |
| 3rhtA00 | 3.40.50.880 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain | 0.51 | 38.0 | 2.61e-01 | 93.9% | 54.4% |
| 2q2eB01 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.51 | 36.0 | 2.48e-01 | 81.6% | 72.4% |
| 1b63A01 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.51 | 36.0 | 2.53e-01 | 85.7% | 75.9% |
| 2bngC00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 36.0 | 2.74e-01 | 77.6% | 60.0% |
| 3snxA00 | 1.25.40.390 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.50 | 38.0 | 2.25e-01 | 83.7% | 72.7% |
| 2fj0A01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.50 | 40.0 | 2.35e-01 | 100.0% | 48.9% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3944219 | 4267.1.1.1 ↗ | a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like › PhdYeFM_antitox | 0.91 | 83.0 | 7.27e-01 | 100.0% | 71.4% |
| 397699 | 4267.1.1.1 ↗ | a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like › PhdYeFM_antitox | 0.89 | 80.0 | 6.98e-01 | 100.0% | 69.4% |
| 4611720 | 4267.1.1.1 ↗ | a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like › PhdYeFM_antitox | 0.89 | 79.0 | 6.70e-01 | 100.0% | 63.7% |
| 4358836 | 4267.1.1.1 ↗ | a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like › PhdYeFM_antitox | 0.87 | 77.0 | 6.55e-01 | 100.0% | 63.7% |
| 3970114 | 4267.1.1.0 ↗ | a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like | 0.86 | 77.0 | 7.40e-01 | 100.0% | 87.3% |
| 3954634 | 4267.1.1.1 ↗ | a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like › PhdYeFM_antitox | 0.84 | 74.0 | 6.21e-01 | 100.0% | 58.3% |
| 2649940 | 4267.1.1.1 ↗ | a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like › PhdYeFM_antitox | 0.82 | 71.0 | 6.76e-01 | 100.0% | 86.4% |
| 3284279 | 4267.1.1.1 ↗ | a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like › PhdYeFM_antitox | 0.82 | 66.0 | 6.82e-01 | 89.8% | 97.8% |
| 3287302 | 4267.1.1.1 ↗ | a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like › PhdYeFM_antitox | 0.81 | 70.0 | 6.24e-01 | 100.0% | 68.6% |
| 3979098 | 4267.1.1.0 ↗ | a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like | 0.80 | 70.0 | 6.10e-01 | 100.0% | 65.3% |
| 3281701 | 4267.1.1.0 ↗ | a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like | 0.79 | 68.0 | 6.46e-01 | 100.0% | 85.0% |
| 4115104 | 4267.1.1.0 ↗ | a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like | 0.72 | 60.0 | 5.72e-01 | 100.0% | 81.7% |
| 3281080 | 4267.1.1.0 ↗ | a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like | 0.70 | 59.0 | 5.63e-01 | 100.0% | 96.7% |
| 3738691 | 101.1.2.271 ↗ | alpha arrays › HTH › HTH › winged helix domain › B-block_TFIIIC | 0.63 | 48.0 | 4.11e-01 | 83.7% | 95.0% |
| 3408663 | 7579.1.1.89 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › COesterase, BD-FAE | 0.62 | 44.0 | 2.55e-01 | 77.6% | 35.2% |
| 4528695 | 247.1.1.0 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase | 0.60 | 44.0 | 3.07e-01 | 79.6% | 28.0% |
| 3238508 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.59 | 46.0 | 4.08e-01 | 83.7% | 84.3% |
| 5036485 | 3688.1.1.0 ↗ | a+b two layers › N-terminal subdomain in UbiD middle domain › N-terminal subdomain in UbiD middle domain › N-terminal subdomain in UbiD middle domain | 0.58 | 44.0 | 4.07e-01 | 95.9% | 64.0% |
| 5056107 | 282.1.1.1 ↗ | a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS | 0.57 | 47.0 | 3.55e-01 | 95.9% | 79.2% |
| 3927049 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.56 | 47.0 | 2.75e-01 | 93.9% | 35.9% |
| 3242227 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.55 | 41.0 | 2.58e-01 | 83.7% | 16.0% |
| 3962817 | 3105.1.1.1 ↗ | a+b three layers › thylakoid acid phosphatase domain-related › thylakoid acid phosphatase domain-related › thylakoid acid phosphatase domain-related › TPM_phosphatase | 0.55 | 43.0 | 3.80e-01 | 98.0% | 64.7% |
| 2392643 | 2008.1.1.1 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Flu_PA | 0.54 | 39.0 | 2.61e-01 | 83.7% | 17.7% |
| 4989274 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 44.0 | 3.26e-01 | 95.9% | 80.0% |
| 3294223 | 304.9.1.47 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › DUF4283 | 0.53 | 41.0 | 3.70e-01 | 85.7% | 81.4% |
| 5060792 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.53 | 36.0 | 2.78e-01 | 71.4% | 49.2% |
| 3925479 | 207.1.1.156 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › PF27094 | 0.53 | 43.0 | 2.80e-01 | 100.0% | 58.1% |
| 5053065 | 225.1.1.7 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c_3 | 0.52 | 37.0 | 2.51e-01 | 81.6% | 68.8% |
| 4014050 | 603.2.1.0 ↗ | alpha bundles › STAT-like › STAT › STAT | 0.52 | 38.0 | 2.45e-01 | 77.6% | 55.7% |
| 5044840 | 225.1.1.0 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | 0.52 | 37.0 | 2.41e-01 | 81.6% | 59.0% |
| 4233929 | 225.1.1.7 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c_3 | 0.51 | 37.0 | 2.54e-01 | 85.7% | 74.7% |
| 4107504 | 225.1.1.3 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c | 0.50 | 35.0 | 2.45e-01 | 79.6% | 75.8% |
| 5011930 | 282.1.1.1 ↗ | a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS | 0.50 | 42.0 | 3.30e-01 | 100.0% | 66.1% |
| 4934340 | 101.1.2.1 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_1 | 0.50 | 34.0 | 2.74e-01 | 71.4% | 77.0% |