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MW015081.1__QPX48064.1__X__00099
Bact-VirMW015081.1__QPX48064.1__X__00099
Identity
- Accession:
- MW015081 ↗
- Kingdom:
- phage
Quality
84.9
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Kyanoviridae›
Serangoonvirus›
Synechococcus_phage_S-SRM01
TaxID: 2781608
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-70
Domain cluster:
representative
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4hkaA02 | 1.10.287.3810 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.84 | 52.0 | 5.95e-01 | 82.4% | 84.3% |
| 3icxA01 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.69 | 47.0 | 4.59e-01 | 77.9% | 64.0% |
| 2np9A01 | 1.20.58.1300 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.69 | 45.0 | 3.52e-01 | 76.5% | 33.6% |
| 1u89A00 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.67 | 49.0 | 3.83e-01 | 80.9% | 37.4% |
| 4akgA11 | 1.20.920.20 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › | 0.67 | 55.0 | 3.65e-01 | 89.7% | 31.2% |
| 5fmnA00 | 1.20.58.1000 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer | 0.66 | 60.0 | 5.53e-01 | 100.0% | 91.9% |
| 5a0uA01 | 3.20.70.20 | Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › | 0.64 | 58.0 | 3.25e-01 | 100.0% | 28.3% |
| 4nsmA00 | 6.10.250.2770 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.64 | 46.0 | 4.57e-01 | 75.0% | 73.2% |
| 1o6zA01 | 3.90.110.10 | Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal | 0.64 | 46.0 | 3.48e-01 | 75.0% | 44.7% |
| 3vkhB01 | 1.10.287.2620 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.63 | 43.0 | 4.40e-01 | 70.6% | 100.0% |
| 4zvaA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.62 | 56.0 | 4.31e-01 | 100.0% | 67.1% |
| 3i1aA03 | 1.20.58.840 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.62 | 56.0 | 4.66e-01 | 100.0% | 85.3% |
| 4ie5A02 | 1.20.58.1470 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › FTO C-terminal domain | 0.62 | 43.0 | 3.52e-01 | 73.5% | 38.8% |
| 4w4kA00 | 1.10.287.850 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain | 0.62 | 47.0 | 4.40e-01 | 80.9% | 70.7% |
| 4hzuS00 | 1.10.1760.20 | Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › | 0.61 | 54.0 | 4.07e-01 | 98.5% | 51.8% |
| 3ig5A04 | 1.10.8.960 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.58 | 42.0 | 4.34e-01 | 77.9% | 98.5% |
| 6ko5A02 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.58 | 49.0 | 3.31e-01 | 100.0% | 42.8% |
| 4nrjB01 | 3.90.20.10 | Alpha Beta › Alpha-Beta Complex › Hemagglutinin Ectodomain; Chain B › | 0.58 | 48.0 | 3.74e-01 | 97.1% | 57.1% |
| 6cw0A00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.55 | 36.0 | 3.15e-01 | 91.2% | 43.3% |
| 4hteA01 | 1.20.58.1730 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.53 | 46.0 | 3.63e-01 | 97.1% | 58.7% |
| 3r9bA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.53 | 46.0 | 2.88e-01 | 100.0% | 50.9% |
| 1d8cA02 | 2.170.170.11 | Mainly Beta › Beta Complex › Malate synthase G - maily-beta sub-domain › Malate synthase G - maily-beta sub-domain | 0.52 | 44.0 | 3.59e-01 | 100.0% | 49.2% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3641695 | 3843.1.1.0 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K | 0.77 | 61.0 | 6.05e-01 | 100.0% | 81.4% |
| 3620869 | 101.1.9.106 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › Ion_trans | 0.74 | 47.0 | 4.20e-01 | 79.4% | 46.3% |
| 3504474 | 192.5.1.1 ↗ | alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › HR1 | 0.73 | 52.0 | 4.54e-01 | 82.4% | 51.0% |
| 3509201 | 1008.1.1.1 ↗ | alpha bundles › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › BRCC36_C | 0.70 | 53.0 | 4.91e-01 | 82.4% | 64.7% |
| 3586169 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.69 | 61.0 | 4.81e-01 | 98.5% | 49.3% |
| 3719896 | 3755.2.1.0 ↗ | alpha bundles › YscO-like › Flagellar FliJ protein › Flagellar FliJ protein | 0.66 | 47.0 | 4.26e-01 | 80.9% | 53.7% |
| 3687272 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.66 | 50.0 | 4.08e-01 | 82.4% | 44.0% |
| 3620856 | 873.1.1.5 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › HNOB | 0.65 | 51.0 | 3.65e-01 | 100.0% | 29.0% |
| 3866777 | 5001.1.1.3 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_2 | 0.65 | 57.0 | 3.56e-01 | 97.1% | 36.2% |
| 3236195 | 603.2.1.0 ↗ | alpha bundles › STAT-like › STAT › STAT | 0.63 | 48.0 | 3.52e-01 | 80.9% | 41.7% |
| 3959227 | 150.7.1.2 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › PE › PE › EspB_PE | 0.63 | 45.0 | 4.17e-01 | 80.9% | 60.0% |
| 3194358 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.61 | 45.0 | 2.84e-01 | 79.4% | 75.5% |
| 3728650 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.60 | 42.0 | 4.18e-01 | 72.1% | 71.4% |
| 3175565 | 633.24.1.0 ↗ | alpha bundles › Bromodomain-like › RABEX-5 helical domain › RABEX-5 helical domain | 0.60 | 51.0 | 4.42e-01 | 97.1% | 61.0% |
| 3720488 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.58 | 51.0 | 4.12e-01 | 98.5% | 50.8% |
| 3403079 | 375.10.1.1 ↗ | few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha › zf-DNA_Pol | 0.56 | 39.0 | 3.40e-01 | 73.5% | 68.2% |
| 4534325 | 7516.1.1.2 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 | 0.53 | 43.0 | 2.92e-01 | 100.0% | 53.1% |
| 4263799 | 376.1.3.22 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › STL11_N | 0.52 | 38.0 | 2.93e-01 | 77.9% | 45.5% |
| 3988812 | 614.1.1.27 ↗ | alpha duplicates or obligate multimers › L27 domain › L27 domain › L27 domain › DDE_Tnp_1 | 0.50 | 38.0 | 3.72e-01 | 86.8% | 85.0% |