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MW015081.1__QPX48082.1__X__00117

Bact-Vir

MW015081.1__QPX48082.1__X__00117

Identity

Accession:
MW015081 ↗
Kingdom:
phage

Quality

92.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Serangoonvirus› Synechococcus_phage_S-SRM01

TaxID: 2781608

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-48
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2yfvC00 6.10.250.2010 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.79 49.0 4.45e-01 71.7% 48.3%
3ewiB00 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.62 52.0 3.68e-01 97.8% 97.5%
1rsgA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.60 50.0 3.21e-01 97.8% 97.6%
4ht4A00 3.30.930.30 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › 0.57 49.0 3.26e-01 97.8% 89.7%
1ehiA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.57 49.0 3.49e-01 100.0% 91.0%
3weeA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.56 49.0 3.31e-01 100.0% 78.1%
1tkeA01 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.55 31.0 2.76e-01 82.6% 39.1%
3zg9A00 6.20.370.110 Special › Other non-globular › Rhinovirus 14, subunit 4 › 0.53 30.0 3.18e-01 91.3% 61.0%
2vx3C02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.53 45.0 2.86e-01 97.8% 29.0%
2il5A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 47.0 3.19e-01 100.0% 37.7%
1vwxY00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.52 44.0 3.20e-01 95.7% 77.6%
3ztvA01 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.51 43.0 2.53e-01 91.3% 97.1%
4uijA00 3.30.710.10 Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A 0.50 44.0 3.43e-01 100.0% 90.4%
6vg3B02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.50 38.0 2.57e-01 82.6% 39.7%
1hbxA01 3.40.1810.10 Alpha Beta › 3-Layer(aba) Sandwich › SRF-like › Transcription factor, MADS-box 0.50 36.0 3.27e-01 89.1% 53.5%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3959053 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.72 49.0 3.22e-01 71.7% 17.8%
3287147 4177.1.1.0 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.67 47.0 3.20e-01 73.9% 91.8%
5080148 7523.1.1.0 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.64 44.0 3.23e-01 71.7% 93.0%
3957374 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.63 43.0 3.81e-01 87.0% 48.6%
3798928 59.1.4.2 ↗ beta complex topology › triple barrel › triple barrel › TFIID subunits TAF1-TAF7 › DUF3591 0.62 48.0 2.74e-01 84.8% 9.2%
3613249 221.4.1.0 ↗ a+b two layers › beta-Grasp › Nudix › Nudix 0.59 45.0 2.84e-01 87.0% 69.6%
4947615 3604.1.1.0 ↗ a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain 0.59 42.0 3.89e-01 80.4% 70.8%
5056488 2003.1.5.66 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 0.58 51.0 3.34e-01 100.0% 26.2%
5078195 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 39.0 3.41e-01 100.0% 42.7%
3959431 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.55 39.0 3.19e-01 80.4% 57.1%
1007369 235.1.1.0 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like 0.54 28.0 2.98e-01 87.0% 56.1%
3655226 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.53 46.0 3.27e-01 97.8% 61.5%