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MW015081.1__QPX48128.1__X__00163

Bact-Vir

MW015081.1__QPX48128.1__X__00163

Identity

Accession:
MW015081 ↗
Kingdom:
phage

Quality

79.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Serangoonvirus› Synechococcus_phage_S-SRM01

TaxID: 2781608

Cluster

View cluster (7 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-57
PDB
Domain cluster: rep: KU594606.1__AMO43059.1__R1080702_050__00044__D7-59
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3udcA02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.82 65.0 6.48e-01 100.0% 84.0%
3fb9B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.77 69.0 5.65e-01 100.0% 67.9%
5ajiB02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.76 61.0 6.10e-01 100.0% 88.0%
4k7cA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.75 66.0 3.83e-01 100.0% 24.6%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.73 60.0 6.08e-01 100.0% 91.7%
1dwnA00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.72 57.0 4.18e-01 87.5% 43.3%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 63.0 6.00e-01 100.0% 86.0%
1vwxT01 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.70 62.0 4.91e-01 100.0% 62.9%
6ya6A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.68 54.0 4.30e-01 87.5% 91.8%
2grgA01 3.40.1840.10 Alpha Beta › 3-Layer(aba) Sandwich › Profilin-like › YNR034W-A-like 0.68 52.0 4.32e-01 83.3% 98.8%
2lc4A00 2.30.30.830 Mainly Beta › Roll › SH3 type barrels. › 0.66 54.0 4.03e-01 87.5% 37.8%
1t6lA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.64 48.0 3.09e-01 85.4% 44.6%
1xg9A02 3.10.25.20 Alpha Beta › Roll › Methionyl-tRNA Fmet Formyltransferase; Chain A, domain 2 › 0.64 48.0 4.48e-01 83.3% 91.9%
6yfiB01 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.63 49.0 3.59e-01 85.4% 43.0%
1vhzA01 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.62 45.0 3.10e-01 79.2% 67.4%
6j8yC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.62 50.0 3.21e-01 93.8% 36.1%
7t28A01 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.60 43.0 2.76e-01 77.1% 22.5%
3bm4A00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.60 45.0 2.98e-01 81.2% 20.8%
3k7cA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 49.0 3.82e-01 93.8% 94.4%
3ovcA01 3.30.200.150 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › 0.59 48.0 4.23e-01 89.6% 83.1%
2qggA02 2.30.30.240 Mainly Beta › Roll › SH3 type barrels. › PRC-barrel domain 0.59 48.0 4.20e-01 100.0% 78.3%
3qwmA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 49.0 3.76e-01 100.0% 63.8%
1wuoA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.59 40.0 2.64e-01 72.9% 32.4%
3njcA00 3.30.1380.20 Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › Trafficking protein particle complex subunit 3 0.59 44.0 3.17e-01 83.3% 54.9%
2lmcB00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.58 45.0 4.29e-01 91.7% 75.4%
2kd2A01 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.58 44.0 3.83e-01 89.6% 83.3%
2qqpA03 2.60.40.4260 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 45.0 3.32e-01 89.6% 75.2%
1mfnA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 46.0 3.73e-01 87.5% 94.6%
1a87A01 3.30.1120.60 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › Colicin 0.56 47.0 3.86e-01 100.0% 80.4%
2gtlO02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.55 43.0 3.21e-01 100.0% 72.4%
3dlbA04 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.55 45.0 3.18e-01 97.9% 95.4%
1cauA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 46.0 3.17e-01 97.9% 65.7%
3kztA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 44.0 3.34e-01 95.8% 82.6%
2e4mC00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.55 41.0 3.13e-01 91.7% 97.2%
1a7tA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.55 48.0 3.10e-01 100.0% 29.1%
5mc9A02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 45.0 3.14e-01 100.0% 58.8%
3m1uA01 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.54 46.0 3.23e-01 100.0% 42.1%
4q63A00 2.40.10.430 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.53 40.0 3.40e-01 89.6% 73.1%
3n91A02 2.40.128.420 Mainly Beta › Beta Barrel › Lipocalin › 0.53 44.0 3.31e-01 100.0% 88.2%
1fc6A02 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.52 40.0 3.46e-01 95.8% 91.3%
3pg4A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.51 43.0 2.78e-01 95.8% 34.8%
4fxdA05 3.90.1600.10 Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain 0.51 37.0 2.86e-01 81.2% 85.5%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4952887 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.89 74.0 7.04e-01 100.0% 78.2%
4972872 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.84 69.0 7.12e-01 100.0% 95.6%
3603357 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.84 72.0 6.88e-01 100.0% 81.8%
5017214 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.83 70.0 6.70e-01 100.0% 80.0%
4946165 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.82 69.0 6.59e-01 100.0% 80.0%
4964421 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.80 66.0 5.94e-01 100.0% 67.7%
3704356 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 71.0 5.93e-01 100.0% 60.0%
4981036 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.78 62.0 6.37e-01 100.0% 95.6%
5025079 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 64.0 6.19e-01 100.0% 81.8%
2321269 4.1.1.46 ↗ beta barrels › SH3 › SH3 › SH3 › VEG 0.77 69.0 5.65e-01 100.0% 67.9%
3834112 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.76 68.0 5.70e-01 100.0% 90.0%
3342814 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.76 67.0 5.35e-01 100.0% 75.8%
3981575 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 63.0 6.10e-01 100.0% 83.6%
4961138 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.72 63.0 5.46e-01 100.0% 72.0%
3700770 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 65.0 6.01e-01 100.0% 88.3%
3333322 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.71 63.0 4.55e-01 100.0% 40.0%
4293453 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 62.0 5.25e-01 100.0% 65.0%
4882197 219.1.1.28 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.70 60.0 4.57e-01 100.0% 52.5%
3964944 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.70 60.0 4.33e-01 100.0% 35.0%
3217772 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 60.0 4.99e-01 100.0% 84.7%
3231154 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 60.0 5.06e-01 100.0% 91.3%
4348606 4.1.1.440 ↗ beta barrels › SH3 › SH3 › SH3 › PF27165 0.66 56.0 5.15e-01 100.0% 78.5%
1905738 219.1.1.28 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.66 56.0 4.01e-01 100.0% 38.5%
3399407 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 56.0 4.47e-01 100.0% 87.0%
None — 0.65 48.0 2.90e-01 83.3% 21.6%
3207081 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.65 55.0 5.04e-01 97.9% 93.8%
4015238 219.1.1.28 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.63 55.0 4.11e-01 100.0% 39.2%
3619778 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.63 47.0 2.96e-01 83.3% 25.7%
999030 3454.1.1.1 ↗ beta barrels › GspC HR domain/PilP-like › GspC HR domain/PilP-like › GspC HR domain/PilP-like › PilP 0.63 50.0 3.94e-01 87.5% 41.7%
3595152 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.62 53.0 3.63e-01 100.0% 48.6%
4029209 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.62 48.0 4.36e-01 89.6% 88.6%
4001388 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.62 48.0 2.99e-01 87.5% 27.1%
3355345 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 48.0 4.30e-01 87.5% 81.4%
5042986 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 51.0 4.81e-01 100.0% 91.7%
None — 0.61 51.0 2.95e-01 95.8% 36.8%
3742908 4075.1.1.2 ↗ a+b complex topology › RGC domain › RGC domain › RGC domain › PF29130 0.61 50.0 4.15e-01 100.0% 92.6%
None — 0.60 53.0 3.13e-01 100.0% 63.3%
1731086 295.1.1.9 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › Imm42 0.60 47.0 3.41e-01 91.7% 91.0%
3381618 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 49.0 3.67e-01 95.8% 54.4%
4257535 1.1.5.25 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.58 46.0 3.58e-01 87.5% 67.0%
4054903 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.58 50.0 2.73e-01 100.0% 40.3%
3709808 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.58 45.0 3.65e-01 87.5% 52.6%
3710370 2484.1.1.1 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 0.58 43.0 2.68e-01 81.2% 89.4%
3241869 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.56 48.0 3.76e-01 100.0% 64.5%
3943626 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.55 39.0 2.79e-01 79.2% 68.6%
3501432 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.55 40.0 3.18e-01 81.2% 65.5%
3602032 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 41.0 3.13e-01 100.0% 56.9%
4029125 5.1.4.21 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Pep3_Vps18 0.54 44.0 2.71e-01 97.9% 22.3%
4484723 220.1.1.126 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Ycf4 0.54 46.0 3.67e-01 100.0% 69.2%
4025219 874.1.1.0 ↗ a+b duplicates or obligate multimers › Smc hinge domain › Smc hinge domain › Smc hinge domain 0.52 42.0 2.78e-01 91.7% 36.6%
2628565 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.51 36.0 3.78e-01 85.4% 97.5%
3890276 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.50 41.0 3.60e-01 97.9% 68.8%