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MW015081.1__QPX48267.1__X__00302
Bact-VirMW015081.1__QPX48267.1__X__00302
Identity
- Accession:
- MW015081 ↗
- Kingdom:
- phage
Quality
92.7
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Kyanoviridae›
Serangoonvirus›
Synechococcus_phage_S-SRM01
TaxID: 2781608
Cluster
View cluster (29 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 15-80
Domain cluster:
representative
CATH (37)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4xrpA02 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.86 | 78.0 | 6.19e-01 | 100.0% | 56.6% |
| 2hdoA01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.84 | 68.0 | 5.19e-01 | 100.0% | 40.1% |
| 3kbbA01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.79 | 62.0 | 4.73e-01 | 100.0% | 38.2% |
| 3e58B01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.77 | 65.0 | 4.98e-01 | 100.0% | 41.5% |
| 3qleA00 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.73 | 65.0 | 4.69e-01 | 100.0% | 37.4% |
| 4lgvA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.64 | 55.0 | 4.01e-01 | 100.0% | 67.7% |
| 4zfvB01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.63 | 53.0 | 3.95e-01 | 100.0% | 89.8% |
| 5jldA02 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.62 | 54.0 | 3.73e-01 | 100.0% | 53.4% |
| 4o5fA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.62 | 53.0 | 4.34e-01 | 100.0% | 57.3% |
| 2jfqA02 | 3.40.50.1860 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.61 | 52.0 | 4.44e-01 | 100.0% | 82.5% |
| 3a7eA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.60 | 52.0 | 3.71e-01 | 100.0% | 50.5% |
| 1w36C01 | 3.40.50.10930 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.60 | 47.0 | 3.38e-01 | 93.9% | 27.2% |
| 2dt5A02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.60 | 52.0 | 4.16e-01 | 100.0% | 63.8% |
| 4qnwA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.59 | 50.0 | 3.21e-01 | 100.0% | 24.9% |
| 3r2uA02 | 3.40.250.10 | Alpha Beta › 3-Layer(aba) Sandwich › Oxidized Rhodanese; domain 1 › Rhodanese-like domain | 0.59 | 51.0 | 4.78e-01 | 100.0% | 82.1% |
| 1up7A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.58 | 45.0 | 3.71e-01 | 100.0% | 43.1% |
| 4p1zA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.58 | 49.0 | 4.10e-01 | 100.0% | 70.9% |
| 2ziuB01 | 3.40.50.10130 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.57 | 46.0 | 3.68e-01 | 100.0% | 42.3% |
| 1hyeA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.56 | 49.0 | 3.82e-01 | 100.0% | 80.3% |
| 7d73A01 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.56 | 46.0 | 3.31e-01 | 100.0% | 33.5% |
| 2yc3A00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.55 | 46.0 | 3.29e-01 | 100.0% | 29.2% |
| 1oe4A00 | 3.40.470.10 | Alpha Beta › 3-Layer(aba) Sandwich › Uracil-DNA Glycosylase, subunit E › Uracil-DNA glycosylase-like domain | 0.55 | 46.0 | 3.26e-01 | 100.0% | 64.1% |
| 1yoeA00 | 3.90.245.10 | Alpha Beta › Alpha-Beta Complex › Inosine-uridine Nucleoside N-ribohydrolase; Chain A › Ribonucleoside hydrolase-like | 0.55 | 44.0 | 2.93e-01 | 100.0% | 19.9% |
| 2p9bA02 | 3.30.110.90 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Amidohydrolase | 0.55 | 41.0 | 3.90e-01 | 100.0% | 65.1% |
| 5ve3A02 | 3.40.250.10 | Alpha Beta › 3-Layer(aba) Sandwich › Oxidized Rhodanese; domain 1 › Rhodanese-like domain | 0.55 | 47.0 | 4.02e-01 | 100.0% | 62.5% |
| 1zejA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.54 | 47.0 | 3.60e-01 | 100.0% | 55.8% |
| 3v4cA02 | 3.40.309.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 2 › Aldehyde Dehydrogenase; Chain A, domain 2 | 0.54 | 46.0 | 3.43e-01 | 100.0% | 68.6% |
| 2qkxA01 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.54 | 46.0 | 3.24e-01 | 100.0% | 29.8% |
| 1uarA01 | 3.40.250.10 | Alpha Beta › 3-Layer(aba) Sandwich › Oxidized Rhodanese; domain 1 › Rhodanese-like domain | 0.54 | 47.0 | 3.73e-01 | 100.0% | 61.3% |
| 3icsA03 | 3.40.250.10 | Alpha Beta › 3-Layer(aba) Sandwich › Oxidized Rhodanese; domain 1 › Rhodanese-like domain | 0.54 | 47.0 | 4.13e-01 | 100.0% | 65.7% |
| 3aayA02 | 3.40.250.10 | Alpha Beta › 3-Layer(aba) Sandwich › Oxidized Rhodanese; domain 1 › Rhodanese-like domain | 0.54 | 45.0 | 3.75e-01 | 100.0% | 72.5% |
| 5tz8A01 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.54 | 41.0 | 2.96e-01 | 100.0% | 24.9% |
| 3gk5A00 | 3.40.250.10 | Alpha Beta › 3-Layer(aba) Sandwich › Oxidized Rhodanese; domain 1 › Rhodanese-like domain | 0.54 | 46.0 | 4.09e-01 | 100.0% | 67.0% |
| 3ip3A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.54 | 47.0 | 3.88e-01 | 100.0% | 74.2% |
| 1e0cA01 | 3.40.250.10 | Alpha Beta › 3-Layer(aba) Sandwich › Oxidized Rhodanese; domain 1 › Rhodanese-like domain | 0.53 | 44.0 | 3.58e-01 | 100.0% | 59.7% |
| 1ez0A02 | 3.40.309.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 2 › Aldehyde Dehydrogenase; Chain A, domain 2 | 0.53 | 45.0 | 3.34e-01 | 100.0% | 69.2% |
| 2piaA02 | 3.40.50.80 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module | 0.51 | 43.0 | 3.66e-01 | 100.0% | 90.9% |
ECOD (48)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4319375 | 2006.1.1.10 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › NT5C | 0.88 | 82.0 | 5.68e-01 | 100.0% | 55.9% |
| 4160431 | 2006.1.1.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like | 0.88 | 81.0 | 5.67e-01 | 100.0% | 56.5% |
| 5032548 | 2006.1.1.10 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › NT5C | 0.87 | 80.0 | 5.64e-01 | 100.0% | 57.8% |
| 5040082 | 2006.1.1.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like | 0.86 | 79.0 | 6.16e-01 | 100.0% | 55.6% |
| 5057598 | 2006.1.1.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like | 0.86 | 79.0 | 6.48e-01 | 100.0% | 67.0% |
| 4959364 | 2006.1.1.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like | 0.86 | 78.0 | 6.30e-01 | 100.0% | 55.1% |
| 4992093 | 2006.1.1.43 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_PNKP | 0.85 | 78.0 | 5.88e-01 | 100.0% | 57.3% |
| 4038162 | 2006.1.1.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like | 0.85 | 78.0 | 5.52e-01 | 100.0% | 58.9% |
| 3775314 | 2006.1.1.40 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › LNS2_PITM1-3 | 0.85 | 77.0 | 5.64e-01 | 100.0% | 39.4% |
| 3726503 | 2006.1.1.28 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › APP1_cat | 0.85 | 77.0 | 5.29e-01 | 100.0% | 35.8% |
| 3375567 | 2006.1.1.10 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › NT5C | 0.84 | 77.0 | 5.26e-01 | 100.0% | 53.1% |
| 4956037 | 2006.1.1.6 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Acid_phosphat_B | 0.84 | 75.0 | 5.61e-01 | 100.0% | 61.9% |
| 5051201 | 2006.1.1.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like | 0.82 | 75.0 | 5.32e-01 | 100.0% | 43.8% |
| 3607844 | 2006.1.1.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › NIF | 0.81 | 70.0 | 4.89e-01 | 100.0% | 31.0% |
| 4028750 | 2006.1.1.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › NIF | 0.80 | 72.0 | 5.00e-01 | 100.0% | 32.5% |
| 3691458 | 2006.1.1.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › NIF | 0.79 | 71.0 | 4.93e-01 | 100.0% | 49.0% |
| 3614130 | 2006.1.1.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › NIF | 0.78 | 67.0 | 4.75e-01 | 100.0% | 32.6% |
| 3927755 | 2006.1.1.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › NIF | 0.78 | 70.0 | 4.85e-01 | 100.0% | 38.6% |
| 3597199 | 2006.1.1.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like | 0.78 | 66.0 | 4.66e-01 | 100.0% | 31.0% |
| 3364877 | 2006.1.1.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › NIF | 0.77 | 69.0 | 4.94e-01 | 100.0% | 44.1% |
| 3266504 | 2006.1.1.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › NIF | 0.77 | 69.0 | 4.85e-01 | 100.0% | 34.0% |
| 3814987 | 2006.1.1.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › NIF | 0.77 | 69.0 | 4.87e-01 | 100.0% | 43.1% |
| 3638928 | 2006.1.1.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › NIF | 0.76 | 67.0 | 4.54e-01 | 100.0% | 27.8% |
| 2494333 | 2006.1.1.44 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase, Hydrolase_like | 0.76 | 67.0 | 4.60e-01 | 100.0% | 61.1% |
| 4216246 | 2006.1.1.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › NIF | 0.75 | 68.0 | 4.65e-01 | 100.0% | 30.5% |
| 4057644 | 2006.1.1.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › NIF | 0.75 | 67.0 | 4.51e-01 | 100.0% | 28.3% |
| 4405875 | 2006.1.1.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › NIF | 0.74 | 66.0 | 4.39e-01 | 100.0% | 26.2% |
| 3607243 | 2007.2.5.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Rhodanese/Cell cycle control phosphatase › Rhodanese | 0.62 | 53.0 | 4.24e-01 | 100.0% | 55.7% |
| 4248051 | 2007.1.19.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › FabD/lysophospholipase-like › SAT | 0.61 | 53.0 | 3.55e-01 | 100.0% | 96.8% |
| 4945657 | 300.1.1.0 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease | 0.59 | 42.0 | 3.31e-01 | 100.0% | 32.5% |
| 5053058 | 2002.1.1.106 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › GDPD | 0.59 | 50.0 | 3.58e-01 | 100.0% | 44.7% |
| 5004976 | 2007.2.5.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Rhodanese/Cell cycle control phosphatase › Rhodanese | 0.59 | 51.0 | 4.43e-01 | 100.0% | 65.7% |
| 4631364 | 7516.1.1.5 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › IspD | 0.57 | 48.0 | 3.37e-01 | 100.0% | 30.2% |
| 2093977 | 7514.1.1.0 ↗ | a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain | 0.56 | 48.0 | 3.96e-01 | 100.0% | 92.1% |
| 5046669 | 2007.1.5.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › ATC-like › CCG | 0.55 | 46.0 | 3.89e-01 | 100.0% | 80.8% |
| 4998980 | 7512.1.1.3 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1 | 0.55 | 43.0 | 3.23e-01 | 100.0% | 30.8% |
| 3981925 | 2484.1.1.9 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve | 0.55 | 47.0 | 3.86e-01 | 100.0% | 66.2% |
| 4439294 | 2484.1.1.174 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH | 0.55 | 47.0 | 3.90e-01 | 100.0% | 76.8% |
| 4346334 | 7523.1.1.15 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › LysR_substrate | 0.55 | 38.0 | 3.32e-01 | 97.0% | 48.0% |
| 4312605 | 7514.1.1.3 ↗ | a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › NAD_binding_6 | 0.54 | 45.0 | 3.71e-01 | 100.0% | 86.6% |
| 4943599 | 2007.2.5.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Rhodanese/Cell cycle control phosphatase | 0.54 | 47.0 | 4.08e-01 | 100.0% | 63.8% |
| 3181264 | 7514.1.1.0 ↗ | a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain | 0.54 | 45.0 | 3.50e-01 | 100.0% | 92.1% |
| 3955654 | 2007.2.5.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Rhodanese/Cell cycle control phosphatase › Rhodanese | 0.53 | 44.0 | 3.59e-01 | 100.0% | 66.2% |
| 4103748 | 2484.1.1.60 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_E_G | 0.52 | 44.0 | 3.95e-01 | 100.0% | 77.0% |
| 3959076 | 2007.2.5.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Rhodanese/Cell cycle control phosphatase | 0.51 | 42.0 | 3.48e-01 | 100.0% | 62.9% |
| 4936732 | 2003.1.5.22 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_Mtase | 0.51 | 42.0 | 2.78e-01 | 100.0% | 38.3% |
| 4382988 | 2484.1.1.174 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH | 0.51 | 43.0 | 3.63e-01 | 100.0% | 70.8% |
| 4858505 | 2003.2.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Formate dehydrogenase/DMSO reductase, domains 2 and 3 › Formate dehydrogenase/DMSO reductase, domains 2 and 3 › Molybdopterin | 0.51 | 41.0 | 3.99e-01 | 93.9% | 86.7% |