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MW021749.1__QPX73107.1__X__00110

Bact-Vir

MW021749.1__QPX73107.1__X__00110

Identity

Accession:
MW021749 ↗
Kingdom:
phage

Quality

88.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Pseudotevenvirus› Citrobacter_phage_vB_Cfr_Xman

TaxID: 2777347

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-43
PDB
Domain cluster: representative
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1yzmA00 4.10.860.20 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain 0.87 78.0 7.55e-01 100.0% 97.8%
4nb5B02 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.84 73.0 6.36e-01 100.0% 68.8%
2gv9A05 1.10.287.690 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain 0.80 72.0 6.31e-01 100.0% 69.5%
2lf0A01 4.10.860.10 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain 0.80 67.0 6.03e-01 100.0% 76.7%
6gy8A01 1.20.1170.10 Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › 0.79 67.0 3.96e-01 100.0% 39.5%
1o9gA02 1.10.287.540 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.79 63.0 6.23e-01 100.0% 88.4%
4l8eA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.77 65.0 4.80e-01 100.0% 38.2%
3t46A00 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.75 58.0 4.92e-01 100.0% 50.7%
4v1gA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.73 63.0 5.02e-01 100.0% 75.3%
3p42A02 6.10.250.2280 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.73 59.0 5.01e-01 97.6% 54.3%
8jx6A02 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.69 56.0 4.35e-01 100.0% 38.8%
1b3qA01 1.10.287.560 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Histidine kinase CheA-like, homodimeric domain 0.68 55.0 5.00e-01 100.0% 67.7%
1dd3A01 1.20.5.710 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Single helix bin 0.66 53.0 4.92e-01 97.6% 73.7%
2wgmA01 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.65 49.0 4.23e-01 100.0% 67.1%
6ictA01 3.90.1410.10 Alpha Beta › Alpha-Beta Complex › set domain protein methyltransferase, domain 1 › set domain protein methyltransferase, domain 1 0.62 48.0 2.98e-01 100.0% 68.7%
1w53A00 1.10.1240.30 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › KaiA/RbsU domain 0.62 52.0 4.22e-01 100.0% 51.2%
6ynwH01 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.61 54.0 4.44e-01 100.0% 60.8%
5dukB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 44.0 3.93e-01 87.8% 65.7%
2j82A00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.59 50.0 3.20e-01 100.0% 43.0%
2nr4A02 1.20.58.290 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. 0.58 45.0 4.25e-01 100.0% 70.7%
2e62A01 6.10.140.420 Special › Helix non-globular › Helix Hairpins › 0.58 49.0 4.56e-01 97.6% 75.0%
3qkaE02 1.10.287.2460 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.58 46.0 4.58e-01 100.0% 97.7%
2c42A03 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.56 48.0 3.10e-01 100.0% 23.1%
2da3A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.54 40.0 3.92e-01 92.7% 76.6%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3715996 4970.1.1.0 ↗ alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I 0.85 78.0 7.27e-01 100.0% 82.0%
148414 605.4.1.2 ↗ alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein › SCAB_CC 0.84 75.0 7.06e-01 100.0% 83.7%
3218879 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.83 73.0 6.46e-01 100.0% 68.3%
4056724 192.6.1.0 ↗ alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain 0.82 72.0 7.05e-01 100.0% 91.1%
1821875 4970.1.1.1 ↗ alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › DNA_pol_B 0.80 71.0 6.30e-01 100.0% 69.5%
3482751 192.1.1.0 ↗ alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain 0.80 70.0 5.98e-01 100.0% 63.1%
3361840 3796.1.1.0 ↗ alpha arrays › Iron-regulated surface determinant protein H linker domain › Iron-regulated surface determinant protein H linker domain › Iron-regulated surface determinant protein H linker domain 0.79 68.0 6.92e-01 97.6% 100.0%
4941665 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.78 67.0 5.67e-01 100.0% 59.4%
4078447 1.1.1.7 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › tRNA-synt_1_2 0.76 64.0 4.14e-01 100.0% 21.5%
4027274 273.1.1.2 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like › CEP76_C 0.75 64.0 4.43e-01 100.0% 28.3%
4322913 192.6.1.0 ↗ alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain 0.74 62.0 6.27e-01 97.6% 100.0%
3892326 192.21.1.1 ↗ alpha bundles › Long alpha-hairpin › Slp2a Rab-binding domain-like › Slp2a Rab-binding domain-like › FYVE_2 0.69 57.0 4.63e-01 100.0% 57.6%
3921635 603.2.1.0 ↗ alpha bundles › STAT-like › STAT › STAT 0.66 55.0 3.63e-01 100.0% 22.1%
3782518 4198.1.1.0 ↗ alpha arrays › TerB-like › TerB-like › TerB-like 0.64 54.0 3.68e-01 100.0% 25.5%
3281203 604.17.1.0 ↗ alpha bundles › Spectrin repeat-like › MTH_863 C-terminal domain-like › MTH_863 C-terminal domain-like 0.63 51.0 4.92e-01 100.0% 86.0%
1877692 6026.1.1.1 ↗ alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain › cwf21 0.63 53.0 5.06e-01 92.7% 81.2%
3680918 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.62 52.0 4.60e-01 100.0% 100.0%
4279766 3757.1.1.0 ↗ extended segments › AF1503 pre-HAMP domain › AF1503 pre-HAMP domain › AF1503 pre-HAMP domain 0.62 54.0 4.78e-01 100.0% 70.0%
5008102 148.1.1.0 ↗ alpha arrays › Histone-like › Histone-related › Histone 0.62 49.0 3.79e-01 95.1% 38.0%
4542817 3757.1.1.0 ↗ extended segments › AF1503 pre-HAMP domain › AF1503 pre-HAMP domain › AF1503 pre-HAMP domain 0.62 54.0 5.30e-01 100.0% 93.3%
314734 4982.1.1.2 ↗ alpha arrays › KaiA/RbsU domain-like › KaiA/RbsU domain › KaiA/RbsU domain › RsbU_N 0.62 52.0 4.19e-01 100.0% 50.0%