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MW023914.1__QQM14043.1__X__00047

Bact-Vir

MW023914.1__QQM14043.1__X__00047

Identity

Accession:
MW023914 ↗
Kingdom:
phage

Quality

94.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Paadamvirus› Rhizobium_phage_vB_RleA_TRX32-1

TaxID: 2777321

Cluster

View cluster (19 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-143
PDB
Domain cluster: rep: LacPavin_0818_WC45_scaffold_30120_prodigal-single.1__X__X__00142__D155-325
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF17338.9 best GP88 99.6 3.40e-28 97.9% 55.8%
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1dk7A00 3.50.7.10 Alpha Beta › 3-Layer(bba) Sandwich › GroEL › GroEL 0.67 33.0 3.27e-01 88.7% 45.2%
2yk4A01 3.30.370.20 Alpha Beta › 2-Layer Sandwich › Barnase; Chain D › 0.60 28.0 3.52e-01 91.5% 72.0%
3icsA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 30.0 2.47e-01 76.1% 26.0%
1hp1A01 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.56 43.0 3.31e-01 100.0% 34.8%
3hl0A01 3.40.50.1970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 37.0 3.57e-01 93.0% 58.5%
3u80A00 3.40.50.9100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Dehydroquinase, class II 0.55 35.0 3.66e-01 92.3% 70.9%
1k77A00 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.53 43.0 3.48e-01 100.0% 46.7%
5hj9A00 3.40.800.10 Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Ureohydrolase domain 0.50 43.0 3.37e-01 93.0% 62.4%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3405177 2496.1.1.2 ↗ a/b three-layered sandwiches › SpoIIaa-like › SpoIIaa-like › SpoIIaa-like › STAS 0.70 43.0 4.48e-01 98.6% 64.4%
3408059 2496.1.1.2 ↗ a/b three-layered sandwiches › SpoIIaa-like › SpoIIaa-like › SpoIIaa-like › STAS 0.70 42.0 4.39e-01 98.6% 63.4%
4632177 3255.1.1.1 ↗ a/b three-layered sandwiches › a/b domain in flagellar biosynthesis protein flhA › a/b domain in flagellar biosynthesis protein flhA › a/b domain in flagellar biosynthesis protein flhA › FHIPEP 0.68 39.0 4.76e-01 92.3% 85.3%
4599886 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.66 45.0 3.84e-01 97.9% 43.6%
4277885 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.64 42.0 3.65e-01 97.9% 43.4%
4279469 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.63 42.0 3.74e-01 97.9% 46.2%
4303997 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.63 43.0 3.64e-01 97.9% 42.6%
5001398 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.62 44.0 3.34e-01 98.6% 30.1%
4932351 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.61 46.0 3.62e-01 97.9% 37.6%
3602602 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.61 46.0 3.82e-01 97.9% 45.7%
4618630 2008.1.1.141 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_19 0.61 36.0 3.83e-01 100.0% 65.6%
4936106 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.61 42.0 3.62e-01 97.9% 45.0%
5074235 7545.1.1.1 ↗ a/b three-layered sandwiches › YchN-like › YchN-like › YchN-like › DsrE 0.60 34.0 3.72e-01 92.3% 65.3%
4075924 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.60 41.0 4.49e-01 92.3% 84.3%
4957359 2002.1.1.60 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 0.60 42.0 3.42e-01 100.0% 38.8%
3697959 2003.1.10.27 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain › CPSase_L_D1 0.60 32.0 3.90e-01 90.1% 80.0%
5038961 327.7.1.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › ZT_dimer 0.59 30.0 3.98e-01 78.2% 90.7%
3639459 2006.1.6.5 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › Tfb4 0.59 49.0 4.17e-01 89.4% 73.6%
5076022 2008.1.1.141 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_19 0.59 34.0 3.78e-01 100.0% 71.8%
4986116 2002.1.1.165 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › FAD_oxidored 0.58 38.0 3.28e-01 86.6% 41.3%
3977266 2002.1.1.232 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Fer4_12 0.58 45.0 3.84e-01 97.9% 51.8%
2440205 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.58 45.0 3.80e-01 97.9% 50.7%
5074452 2002.1.1.32 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Oxidored_FMN 0.57 42.0 3.25e-01 98.6% 33.5%
4783704 109.49.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › Helical domain in acetyl-CoA carboxylase › Helical domain in acetyl-CoA carboxylase › ACC_central 0.57 41.0 4.53e-01 100.0% 95.5%
3718590 7579.1.1.14 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Lipase_3 0.56 42.0 3.10e-01 100.0% 29.6%
3680941 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.55 37.0 4.12e-01 100.0% 88.2%
2106034 327.18.1.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › 40S ribosomal protein S7-A › 40S ribosomal protein S7-A › Ribosomal_S7e 0.55 29.0 3.71e-01 78.9% 89.0%
3618616 327.11.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) 0.53 36.0 3.88e-01 84.5% 81.5%
4993363 2002.1.1.455 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM_2 0.53 41.0 3.14e-01 100.0% 32.8%
3970864 7512.1.1.0 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase 0.52 42.0 3.85e-01 100.0% 64.2%
3302216 2004.1.1.462 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NBD_SMAX1 0.51 46.0 3.94e-01 98.6% 82.2%
5062533 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 42.0 3.32e-01 90.1% 58.0%
D2 high residues 148-241
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF17338.9 best GP88 39.1 1.10e-09 100.0% 34.2%
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3chvA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.64 50.0 3.59e-01 85.1% 75.6%
3e74A02 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.62 49.0 3.41e-01 86.2% 70.3%
1vr6A02 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.61 47.0 3.38e-01 81.9% 68.7%
3lnpA02 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.61 50.0 3.52e-01 89.4% 63.5%
5jmuA00 3.20.20.370 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycoside hydrolase/deacetylase 0.60 47.0 3.64e-01 85.1% 82.3%
3c5qA02 3.20.20.10 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Alanine racemase 0.60 44.0 3.29e-01 78.7% 62.8%
6xehA01 3.40.50.11230 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.58 39.0 3.75e-01 98.9% 58.6%
3x2xA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.57 43.0 3.32e-01 81.9% 59.0%
5cheA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.56 40.0 3.49e-01 96.8% 47.4%
4by3A00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.55 42.0 2.92e-01 85.1% 96.1%
2f5tX01 3.30.870.10 Alpha Beta › 2-Layer Sandwich › Endonuclease; Chain A › Endonuclease Chain A 0.54 37.0 3.33e-01 97.9% 47.5%
7zs9401 3.40.50.410 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain 0.54 41.0 3.19e-01 83.0% 99.6%
2xmzA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 41.0 3.05e-01 85.1% 96.2%
3rotA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.52 42.0 3.74e-01 94.7% 61.5%
4q37A00 3.40.50.280 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cobalamin-binding domain 0.51 41.0 3.85e-01 91.5% 70.8%
3l6uA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.51 38.0 3.54e-01 94.7% 60.3%
3ca8A02 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.51 46.0 3.92e-01 98.9% 61.3%
1jcmP00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.51 44.0 3.23e-01 96.8% 46.3%
3nntA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.51 43.0 3.20e-01 95.7% 70.4%
3jx9A00 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.51 38.0 3.22e-01 80.9% 55.0%
4p22A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.51 41.0 3.19e-01 90.4% 50.7%
4hu8A02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.50 43.0 2.96e-01 100.0% 40.1%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
167501 2002.1.1.139 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › BKACE 0.64 50.0 3.59e-01 85.1% 75.6%
5035672 2002.1.1.236 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DHQS 0.59 40.0 3.55e-01 95.7% 47.1%
4248775 2002.1.1.10 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › IGPS 0.59 44.0 3.30e-01 80.9% 65.7%
3631972 2003.1.4.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › DHS-like NAD/FAD-binding domain 0.58 41.0 3.39e-01 97.9% 39.4%
3580799 2003.1.4.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › DHS-like NAD/FAD-binding domain 0.58 37.0 3.42e-01 97.9% 50.0%
3384651 1137.1.1.0 ↗ a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain 0.56 45.0 4.21e-01 86.2% 85.2%
3281939 2002.1.1.83 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_1 0.55 49.0 3.15e-01 100.0% 64.1%
3334182 2003.1.1.143 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NmrA, NAD_binding_10 0.55 46.0 3.34e-01 94.7% 46.1%
4464173 7570.1.1.0 ↗ a/b three-layered sandwiches › MurD-like peptide ligases, peptide-binding domain › MurD-like peptide ligases, peptide-binding domain › MurD-like peptide ligases, peptide-binding domain 0.54 46.0 4.16e-01 98.9% 87.9%
4395641 7570.1.1.1 ↗ a/b three-layered sandwiches › MurD-like peptide ligases, peptide-binding domain › MurD-like peptide ligases, peptide-binding domain › MurD-like peptide ligases, peptide-binding domain › Mur_ligase_C 0.54 46.0 4.16e-01 98.9% 87.9%
4286526 7570.1.1.1 ↗ a/b three-layered sandwiches › MurD-like peptide ligases, peptide-binding domain › MurD-like peptide ligases, peptide-binding domain › MurD-like peptide ligases, peptide-binding domain › Mur_ligase_C 0.53 45.0 4.09e-01 97.9% 88.1%
3278688 2003.1.1.65 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NAD_binding_7 0.52 35.0 3.01e-01 92.6% 41.9%
2643834 2007.1.3.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like 0.52 41.0 3.76e-01 90.4% 64.8%
5080532 2008.4.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › TBP-interacting protein N-terminal domain-like › TBP-interacting protein N-terminal domain-like 0.51 40.0 3.88e-01 88.3% 74.1%
3947382 2499.2.1.5 ↗ a/b three-layered sandwiches › Subtilisin-like › Domain III of tail sheath protein Gp18 › Domain III of tail sheath protein Gp18 › VipB 0.51 42.0 2.97e-01 92.6% 63.3%
3164095 2002.1.1.10 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › IGPS 0.51 43.0 3.18e-01 96.8% 44.4%
9148 2003.1.1.19 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › AlaDh_PNT_C 0.51 36.0 3.83e-01 93.6% 88.5%