Back to structures

MW032452.1__QPD96213.1__X__00134

Bact-Vir

MW032452.1__QPD96213.1__X__00134

Identity

Accession:
MW032452 ↗
Kingdom:
phage

Quality

88.7 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-75
PDB
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1o5yA00 3.10.690.10 Alpha Beta › Roll › Bifunctional nuclease domain › Bifunctional nuclease domain 0.63 50.0 4.05e-01 86.5% 97.9%
3mkcA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.63 51.0 4.18e-01 91.9% 91.0%
4dxkA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.62 52.0 4.53e-01 100.0% 95.2%
4fgoA00 3.10.620.30 Alpha Beta › Roll › C8orf32 fold › 0.61 44.0 3.35e-01 100.0% 31.5%
7ctpA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 49.0 4.17e-01 87.8% 85.8%
2q18X01 3.10.330.40 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.60 50.0 5.17e-01 93.2% 100.0%
4iapA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 50.0 4.67e-01 93.2% 88.0%
1gd5A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.59 45.0 3.82e-01 85.1% 92.3%
2wweA01 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.58 43.0 3.88e-01 81.1% 98.1%
1eucB01 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.58 51.0 4.05e-01 100.0% 62.6%
1jllB01 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.57 51.0 3.99e-01 100.0% 62.6%
4hcsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 37.0 3.88e-01 97.3% 74.6%
3fogA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.56 40.0 3.68e-01 77.0% 100.0%
1rl2A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 33.0 3.63e-01 98.6% 75.0%
6euaA01 3.90.215.10 Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 0.55 38.0 3.18e-01 73.0% 89.2%
6melB01 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.55 48.0 3.83e-01 100.0% 62.6%
5cbeE00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 33.0 3.56e-01 94.6% 68.8%
4qxaB00 2.30.29.230 Mainly Beta › Roll › PH-domain like › 0.54 45.0 3.64e-01 93.2% 72.8%
7byjA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 44.0 4.07e-01 90.5% 83.2%
2hzmA02 2.20.140.20 Mainly Beta › Single Sheet › q64v53_bacfr protein fold › 0.54 48.0 4.58e-01 98.6% 100.0%
1icwB00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 35.0 3.73e-01 100.0% 77.3%
3op1A02 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.51 38.0 3.40e-01 100.0% 54.1%
1gutA00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.51 37.0 3.85e-01 75.7% 83.6%
3kwrA00 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 43.0 4.19e-01 100.0% 86.7%
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 42.0 4.00e-01 91.9% 87.4%
1ri6A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 44.0 2.90e-01 100.0% 99.7%
1i7dA03 2.70.20.10 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 0.50 38.0 3.16e-01 83.8% 96.5%
4n9jA02 3.30.1120.130 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.50 36.0 3.21e-01 93.2% 52.3%
2kd2A01 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.50 43.0 4.15e-01 95.9% 98.8%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3656144 225.1.1.3 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.64 40.0 2.75e-01 100.0% 19.4%
4985853 802.1.1.1 a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 › BFN_dom 0.62 51.0 4.18e-01 91.9% 99.3%
4971091 802.1.1.1 a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 › BFN_dom 0.62 48.0 3.93e-01 83.8% 99.3%
5011439 802.1.1.0 a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 0.61 41.0 3.33e-01 70.3% 99.3%
3765075 220.1.1.164 beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26089 0.60 50.0 3.84e-01 93.2% 63.3%
3522681 220.1.1.164 beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26089 0.60 50.0 4.07e-01 93.2% 78.6%
3640969 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.59 52.0 3.42e-01 100.0% 92.6%
3914347 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.58 46.0 3.90e-01 91.9% 97.8%
3924073 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 48.0 4.32e-01 93.2% 77.1%
3581945 220.1.1.132 beta barrels › PH domain-like › PH domain-like › PH domain-like › KRIT1_FRMD8_FERM_C 0.56 33.0 3.68e-01 100.0% 73.3%
5075211 802.1.1.0 a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 0.56 35.0 4.17e-01 95.9% 94.0%
3174440 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.56 47.0 3.66e-01 93.2% 53.9%
3277633 896.1.1.0 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.55 38.0 3.73e-01 97.3% 66.3%
3439990 220.1.1.76 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.55 37.0 3.49e-01 100.0% 56.7%
4992788 2484.1.1.139 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF429 0.55 48.0 3.54e-01 98.6% 87.5%
4672032 848.1.1.1 a+b complex topology › Hsp33 domain › Hsp33 domain › Hsp33 domain › HSP33 0.55 48.0 3.38e-01 100.0% 98.4%
3789113 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.55 46.0 3.20e-01 95.9% 38.0%
4051907 848.1.1.1 a+b complex topology › Hsp33 domain › Hsp33 domain › Hsp33 domain › HSP33 0.54 47.0 3.40e-01 100.0% 97.8%
4946613 512.1.1.5 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_3rd 0.54 46.0 3.41e-01 95.9% 62.0%
4951189 802.1.1.0 a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 0.53 33.0 3.63e-01 97.3% 90.0%
3828973 252.1.1.1 a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › MBD 0.53 37.0 3.91e-01 93.2% 83.1%
4494049 5.1.4.35 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lactonase 0.53 45.0 2.88e-01 94.6% 100.0%
4934130 2484.1.1.139 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF429 0.52 46.0 3.43e-01 100.0% 86.5%
4961179 802.1.1.0 a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 0.52 32.0 3.56e-01 97.3% 90.0%
3449728 5.1.3.144 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like 0.52 45.0 3.01e-01 100.0% 98.7%
3901670 5.1.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed › Hemopexin 0.51 45.0 3.23e-01 100.0% 73.3%
3641570 3131.1.1.1 a+b two layers › FYR domain › FYR domain › FYR domain › FYRN,FYRC 0.51 41.0 3.30e-01 95.9% 44.7%
4563304 5.1.4.35 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lactonase 0.51 44.0 2.89e-01 98.6% 100.0%