Back to structures

MW032452.1__QPD96236.1__X__00160

Bact-Vir

MW032452.1__QPD96236.1__X__00160

Identity

Accession:
MW032452 ↗
Kingdom:
phage

Quality

84.8 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-56
PDB
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3i2fA02 1.10.3020.10 Mainly Alpha › Orthogonal Bundle › alpha-amino acid ester hydrolase ( Helical cap domain) › alpha-amino acid ester hydrolase ( Helical cap domain) 0.83 56.0 4.52e-01 100.0% 40.0%
4l7nA01 1.20.142.10 Mainly Alpha › Up-down Bundle › Poly(ADP-ribose) Polymerase; domain 1 › Poly(ADP-ribose) polymerase, regulatory domain 0.68 57.0 4.33e-01 100.0% 44.8%
1vhnA02 1.10.1200.80 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Putative flavin oxidoreducatase; domain 2 0.67 55.0 5.20e-01 100.0% 95.8%
2p1aB01 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.67 57.0 4.24e-01 98.2% 58.2%
3r2cA00 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.66 51.0 3.87e-01 87.3% 39.1%
1ohcA02 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.65 48.0 3.44e-01 80.0% 88.2%
4kjmA02 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.65 43.0 4.38e-01 98.2% 69.1%
2i6xA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.65 51.0 4.75e-01 87.3% 70.4%
3qnmA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.65 52.0 4.44e-01 89.1% 64.4%
2kvdA02 1.10.720.30 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › SAP domain 0.64 47.0 4.63e-01 83.6% 74.1%
3gfaA00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.64 45.0 3.12e-01 100.0% 21.4%
1zu4A01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.64 53.0 4.63e-01 96.4% 75.9%
1yz4B01 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.64 46.0 3.39e-01 78.2% 86.3%
3kd3A02 1.10.150.210 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Phosphoserine phosphatase; domain 2 0.63 47.0 4.61e-01 94.5% 73.3%
4jmjA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.63 47.0 3.32e-01 80.0% 82.9%
6t0bc01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.63 46.0 4.07e-01 100.0% 53.8%
2riqA01 1.10.20.130 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › 0.63 44.0 4.25e-01 80.0% 63.6%
2fnaA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 45.0 4.13e-01 80.0% 57.5%
1a41A02 1.20.120.380 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Type 1-topoisomerase catalytic fragment, domain 2 0.63 53.0 4.55e-01 98.2% 87.2%
3zdmB00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.62 47.0 4.83e-01 98.2% 94.0%
3k1hA00 3.30.1120.180 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › Flagellar FLiS export co-chaperone, HP1076 0.62 51.0 4.18e-01 100.0% 71.3%
5t1dB00 3.10.390.20 Alpha Beta › Roll › SAND domain › Viral glycoprotein L 0.61 37.0 3.10e-01 96.4% 34.3%
2prrA02 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.61 50.0 3.95e-01 98.2% 44.9%
1ma1A01 1.10.287.990 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain 0.60 44.0 4.23e-01 96.4% 67.2%
3s6jE02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.60 42.0 3.99e-01 80.0% 60.9%
2r0bA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.59 46.0 3.42e-01 85.5% 94.7%
1zp2A02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.59 47.0 3.83e-01 90.9% 82.1%
6z01B01 1.10.10.41 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Yeast DNA topoisomerase - domain 1 0.59 50.0 4.53e-01 100.0% 74.4%
4f3vB01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.59 50.0 3.27e-01 100.0% 25.7%
3ab3D00 1.10.167.10 Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 0.58 45.0 3.44e-01 96.4% 88.5%
3mabA00 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.58 43.0 3.87e-01 85.5% 64.7%
4g1tA02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.58 42.0 4.09e-01 78.2% 82.0%
1f5oA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.58 43.0 3.29e-01 85.5% 49.7%
4f03B02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.57 44.0 3.36e-01 89.1% 91.7%
4eqqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 44.0 4.65e-01 85.5% 100.0%
2g8lA02 1.10.285.20 Mainly Alpha › Orthogonal Bundle › Glutamate Dehydrogenase; Chain A, domain 3 › Uncharacterised protein PF01937, DUF89, domain 2 0.56 37.0 3.50e-01 96.4% 56.9%
4f6cB00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.56 43.0 2.65e-01 83.6% 21.2%
4houB00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.56 47.0 3.19e-01 100.0% 37.6%
4azsA03 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.56 43.0 3.34e-01 90.9% 51.4%
6d2qA02 1.20.80.10 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › 0.55 48.0 3.92e-01 98.2% 80.8%
3elkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 46.0 3.69e-01 90.9% 81.0%
1x4oA00 1.10.10.790 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Surp module 0.55 47.0 4.20e-01 100.0% 67.9%
1z9eA00 1.20.930.10 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 0.54 46.0 4.08e-01 100.0% 97.6%
3lnnB03 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.54 43.0 4.06e-01 100.0% 73.1%
1su0B00 3.90.1010.10 Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › 0.53 46.0 3.49e-01 100.0% 40.4%
6melB01 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.53 44.0 3.32e-01 100.0% 57.4%
2yqzA02 1.10.8.900 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.53 37.0 3.46e-01 74.5% 61.8%
4jvyB00 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.52 44.0 3.09e-01 100.0% 95.3%
4ol8B03 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.51 40.0 3.57e-01 94.5% 75.6%
3kbbA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.51 39.0 3.65e-01 90.9% 65.7%
3k3oA02 1.20.58.1360 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 42.0 3.72e-01 94.5% 81.0%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3575777 101.43.1.0 alpha arrays › HTH › Phage G20C small terminase N-terminal domain › Phage G20C small terminase N-terminal domain 0.77 59.0 6.14e-01 87.3% 90.0%
3786647 592.6.1.1 alpha arrays › PWI domain-like › Pre-mRNA-splicing helicase BRR2 plug domain › Pre-mRNA-splicing helicase BRR2 plug domain › BRR2_plug 0.77 60.0 5.31e-01 94.5% 58.7%
3742721 592.6.1.1 alpha arrays › PWI domain-like › Pre-mRNA-splicing helicase BRR2 plug domain › Pre-mRNA-splicing helicase BRR2 plug domain › BRR2_plug 0.75 59.0 4.82e-01 92.7% 47.0%
3180704 592.6.1.1 alpha arrays › PWI domain-like › Pre-mRNA-splicing helicase BRR2 plug domain › Pre-mRNA-splicing helicase BRR2 plug domain › BRR2_plug 0.75 59.0 4.60e-01 92.7% 40.9%
3720299 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.73 55.0 4.70e-01 85.5% 50.0%
3797432 130.1.1.0 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.72 57.0 5.81e-01 89.1% 90.6%
3629063 2007.2.3.2 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › DSPc 0.69 51.0 3.43e-01 80.0% 74.5%
3618803 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.67 59.0 5.78e-01 98.2% 91.7%
3244407 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.67 54.0 5.30e-01 89.1% 81.7%
3454767 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.67 48.0 4.90e-01 78.2% 76.4%
4678110 632.2.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains 0.67 44.0 3.85e-01 98.2% 46.3%
3455407 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 48.0 4.89e-01 78.2% 76.4%
4953311 604.20.1.0 alpha bundles › Spectrin repeat-like › C-terminal domain in hypothetical protein BACOVA_03992 › C-terminal domain in hypothetical protein BACOVA_03992 0.67 54.0 4.42e-01 89.1% 56.0%
3723123 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.65 49.0 4.80e-01 85.5% 75.0%
3606900 2007.2.3.2 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › DSPc 0.65 49.0 3.31e-01 81.8% 78.6%
3933329 2007.2.3.12 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Tc-R-P 0.64 50.0 3.41e-01 85.5% 79.0%
5014345 101.1.2.554 alpha arrays › HTH › HTH › winged helix domain › PF30184 0.64 47.0 4.05e-01 80.0% 50.0%
4933491 3997.1.1.1 alpha arrays › Helical insertion domain in magnesium chelatase catalytic subunit › Helical insertion domain in magnesium chelatase catalytic subunit › Helical insertion domain in magnesium chelatase catalytic subunit › CobN-Mg_chel 0.63 51.0 3.64e-01 100.0% 28.3%
3389605 2007.2.3.0 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II 0.63 47.0 3.14e-01 80.0% 60.4%
4387419 378.1.1.5 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › Endonuclease_1 0.63 43.0 3.40e-01 100.0% 31.7%
3636036 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.62 50.0 4.92e-01 90.9% 85.0%
4958195 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 46.0 4.62e-01 83.6% 78.2%
3366917 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.61 44.0 4.48e-01 83.6% 80.0%
3783885 1128.1.1.2 alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR_2 0.61 41.0 3.77e-01 70.9% 89.3%
3424102 604.30.1.1 alpha bundles › Spectrin repeat-like › Gamma-secretase subunit PEN-2 › Gamma-secretase subunit PEN-2 › PEN-2 0.60 44.0 3.68e-01 81.8% 59.0%
5053424 5081.1.1.1 alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid 0.60 54.0 3.68e-01 100.0% 30.4%
3252427 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 46.0 3.11e-01 85.5% 40.9%
4456370 5086.1.1.99 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › ApoL 0.59 49.0 4.23e-01 100.0% 57.8%
3474421 101.1.2.365 alpha arrays › HTH › HTH › winged helix domain › DEK_C 0.59 44.0 4.14e-01 80.0% 65.7%
4949368 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.59 45.0 4.51e-01 98.2% 87.3%
3723191 101.1.1.256 alpha arrays › HTH › HTH › Three-helical HTH › Clr5 0.59 46.0 4.68e-01 92.7% 87.3%
3252439 198.1.1.10 alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2, SapB_1, Saposin 0.59 50.0 4.49e-01 100.0% 88.7%
4941656 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 47.0 4.14e-01 89.1% 60.0%
3352882 101.7.1.1 alpha arrays › HTH › DEK-C › DEK-C › DEK_C 0.59 46.0 4.27e-01 85.5% 71.4%
5049118 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 46.0 4.46e-01 90.9% 81.5%
5081313 182.1.3.0 alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › PriX 0.58 46.0 4.05e-01 92.7% 63.3%
3261605 198.1.1.2 alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 0.58 51.0 4.53e-01 100.0% 90.0%
3732993 101.1.1.256 alpha arrays › HTH › HTH › Three-helical HTH › Clr5 0.58 43.0 4.24e-01 85.5% 75.0%
3902983 2006.1.2.1 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › DHH phosphoesterases › DHH 0.58 50.0 3.26e-01 96.4% 63.4%
3672635 101.1.1.295 alpha arrays › HTH › HTH › Three-helical HTH › HTH_70 0.58 46.0 4.26e-01 98.2% 69.3%
3923614 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.58 47.0 3.44e-01 100.0% 32.5%
3822906 101.7.1.1 alpha arrays › HTH › DEK-C › DEK-C › DEK_C 0.58 45.0 4.22e-01 87.3% 85.7%
4189431 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 43.0 4.30e-01 85.5% 83.6%
4980755 601.1.1.0 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.57 47.0 3.66e-01 100.0% 85.7%
3457600 103.1.1.34 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › PIR2-like_helical 0.57 43.0 3.02e-01 83.6% 28.7%
4362811 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.57 42.0 4.25e-01 85.5% 83.6%
3924903 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.57 44.0 4.18e-01 83.6% 75.4%
4506757 3922.1.1.129 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › SMC_N 0.56 45.0 2.74e-01 100.0% 58.5%
3255248 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.56 42.0 4.02e-01 87.3% 84.3%
3515586 2007.2.3.2 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › DSPc 0.56 43.0 3.30e-01 87.3% 89.3%
4271175 101.1.2.498 alpha arrays › HTH › HTH › winged helix domain › PF25870 0.56 42.0 3.31e-01 100.0% 35.6%
3517103 4992.1.1.12 extended segments › RelB-like › RelB-like › RelB-like › LIN9_C 0.55 50.0 4.62e-01 100.0% 88.6%
3591784 130.1.1.0 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.55 44.0 4.49e-01 92.7% 100.0%
4932863 101.1.2.947 alpha arrays › HTH › HTH › winged helix domain › PF27234 0.54 48.0 4.24e-01 100.0% 98.8%
5045223 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 45.0 3.89e-01 100.0% 58.9%
3216082 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.53 46.0 3.55e-01 94.5% 64.3%
3685074 101.7.1.1 alpha arrays › HTH › DEK-C › DEK-C › DEK_C 0.52 42.0 4.09e-01 90.9% 85.0%
3931480 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.52 42.0 3.62e-01 92.7% 77.8%
3534368 2484.1.1.204 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27046, PF27073 0.52 42.0 2.54e-01 100.0% 99.6%
4977432 7516.1.1.0 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases 0.51 40.0 2.44e-01 94.5% 41.1%