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MW032452.1__QPD96310.1__X__00163

Bact-Vir

MW032452.1__QPD96310.1__X__00163

Identity

Accession:
MW032452 ↗
Kingdom:
phage

Quality

91.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Drexlerviridae› Henuseptimavirus› Enterobacter_phage_N5822

TaxID: 2777323

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-38
PDB
Domain cluster: representative
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ymsB00 2.40.10.480 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.71 52.0 4.12e-01 94.6% 39.2%
3q7yA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.67 53.0 3.78e-01 94.6% 55.6%
4ldgA00 2.170.270.10 Mainly Beta › Beta Complex › Beta-clip-like › SET domain 0.67 50.0 3.08e-01 81.1% 94.0%
4govA01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.66 54.0 3.83e-01 100.0% 52.7%
1sr4A00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.66 54.0 3.59e-01 100.0% 44.9%
3n71A01 2.170.270.10 Mainly Beta › Beta Complex › Beta-clip-like › SET domain 0.66 46.0 3.46e-01 75.7% 91.4%
4phtY02 3.30.420.370 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › GspL cytoplasmic domain, C-terminal subdomain 0.64 44.0 3.81e-01 100.0% 43.5%
1zkkB00 2.170.270.10 Mainly Beta › Beta Complex › Beta-clip-like › SET domain 0.64 44.0 2.93e-01 75.7% 75.2%
1upsA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.64 52.0 3.67e-01 100.0% 55.6%
1jlxA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.62 49.0 3.48e-01 100.0% 52.9%
3jtzA00 3.30.160.390 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Integrase, DNA-binding domain 0.61 45.0 3.66e-01 83.8% 62.3%
6ictA01 3.90.1410.10 Alpha Beta › Alpha-Beta Complex › set domain protein methyltransferase, domain 1 › set domain protein methyltransferase, domain 1 0.61 44.0 2.64e-01 81.1% 74.8%
3ru0A01 2.170.270.10 Mainly Beta › Beta Complex › Beta-clip-like › SET domain 0.61 45.0 3.06e-01 81.1% 92.6%
2kxqA01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.60 42.0 4.43e-01 75.7% 93.3%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.60 42.0 3.92e-01 78.4% 73.1%
2dk7A00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.59 43.0 3.59e-01 83.8% 46.6%
6g0nA01 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.59 45.0 2.69e-01 97.3% 22.3%
3kreA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.57 44.0 3.51e-01 100.0% 70.1%
1j71A02 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.56 43.0 2.92e-01 91.9% 77.0%
3le4A00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.56 38.0 3.45e-01 73.0% 50.9%
1bm8A00 3.10.260.10 Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › Transcription regulator HTH, APSES-type DNA-binding domain 0.55 41.0 3.34e-01 100.0% 96.0%
1x4rA01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.55 40.0 3.31e-01 91.9% 39.2%
1g2bA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 38.0 3.43e-01 81.1% 87.1%
3kflA02 2.170.220.10 Mainly Beta › Beta Complex › Methionyl-trna Synthetase; domain 2 › 0.54 41.0 2.94e-01 81.1% 68.6%
6fdyU01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 41.0 3.36e-01 89.2% 97.5%
2js3A01 1.10.287.780 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ITPase-like domains 0.53 39.0 3.32e-01 91.9% 47.4%
5cq2A02 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.53 37.0 3.59e-01 75.7% 67.4%
2dy1A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 41.0 2.60e-01 100.0% 18.9%
2ysiA01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.51 37.0 3.77e-01 78.4% 87.9%
2yshA01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.51 35.0 3.64e-01 78.4% 90.9%
1n27A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 39.0 3.07e-01 97.3% 47.9%
2hdiA01 2.170.130.10 Mainly Beta › Beta Complex › Ferric Hydroxamate Uptake Protein; Chain A, domain 1 › TonB-dependent receptor, plug domain 0.51 38.0 2.78e-01 89.2% 61.4%
2ogqA01 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.51 38.0 2.85e-01 100.0% 34.1%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3477189 375.14.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) 0.69 47.0 4.47e-01 73.0% 60.0%
3614328 223.1.1.167 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › DUF4464 0.64 47.0 3.39e-01 83.8% 47.9%
3177203 375.14.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) 0.64 45.0 4.34e-01 75.7% 62.2%
3723104 70.3.1.1 ↗ beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.63 43.0 3.00e-01 73.0% 86.9%
None — 0.62 44.0 2.35e-01 78.4% 4.4%
3271649 70.3.1.1 ↗ beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.62 45.0 2.71e-01 81.1% 91.4%
3599423 4043.1.1.0 ↗ a+b complex topology › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › C-terminal domain in beta subunit of DNA dependent RNA-polymerase 0.61 42.0 2.96e-01 73.0% 25.4%
1614032 64.1.1.1 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW 0.60 42.0 4.30e-01 78.4% 81.1%
3229548 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.60 42.0 3.98e-01 75.7% 62.2%
3712063 4043.1.1.2 ↗ a+b complex topology › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › C-terminal domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_7 0.60 41.0 2.87e-01 73.0% 23.7%
3975782 7529.1.1.1 ↗ a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › Macro 0.59 42.0 2.60e-01 75.7% 11.9%
4968945 4294.1.1.2 ↗ few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › Trm112p 0.59 44.0 4.00e-01 86.5% 70.9%
3708672 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.59 41.0 3.22e-01 75.7% 38.8%
3610398 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.59 41.0 3.34e-01 75.7% 44.0%
3229357 70.3.1.1 ↗ beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.59 46.0 2.99e-01 89.2% 81.1%
3414335 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.58 44.0 3.35e-01 94.6% 33.0%
3330943 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.58 41.0 3.72e-01 78.4% 70.9%
3937471 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.58 43.0 3.41e-01 94.6% 36.7%
3253285 304.8.1.76 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › PF28943 0.57 40.0 2.87e-01 70.3% 21.7%
3596701 192.4.1.0 ↗ alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) 0.57 39.0 3.18e-01 75.7% 45.0%
3402772 207.1.1.130 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1, LRR_5, LRR_8 0.57 44.0 2.54e-01 91.9% 23.5%
3192627 633.1.1.1 ↗ alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain 0.56 41.0 2.71e-01 86.5% 40.5%
4018269 633.1.1.0 ↗ alpha bundles › Bromodomain-like › Bromodomain › Bromodomain 0.55 42.0 2.75e-01 89.2% 41.0%
3641040 807.1.1.4 ↗ a+b two layers › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › Prefoldin 0.55 38.0 3.16e-01 94.6% 40.0%
4433750 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.54 39.0 2.25e-01 78.4% 8.4%
3501387 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.54 38.0 2.31e-01 78.4% 11.7%
3994420 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.54 39.0 3.97e-01 78.4% 88.6%
3586791 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.53 37.0 3.78e-01 73.0% 85.7%
184680 6032.1.1.1 ↗ a+b two layers › DUF3222-like › DUF3222-like › DUF3222-like › DUF3222 0.53 39.0 3.10e-01 91.9% 37.5%
3575778 7579.1.1.42 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Hydrolase_4 0.53 37.0 2.25e-01 78.4% 27.5%
3619305 7579.1.1.6 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 0.52 37.0 2.31e-01 81.1% 29.3%
3259112 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.51 36.0 3.66e-01 78.4% 88.6%
3415601 73.1.1.13 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › Pellino_RING 0.51 38.0 3.13e-01 78.4% 41.3%
3482775 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.50 36.0 3.44e-01 75.7% 64.4%
4985708 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.50 34.0 3.33e-01 73.0% 60.0%