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MW042807.1__QOV07432.1__EHPHDBNB_00140__00028

Bact-Vir

MW042807.1__QOV07432.1__EHPHDBNB_00140__00028

Identity

Accession:
MW042807 ↗
Kingdom:
phage

Quality

95.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Autotranscriptaviridae› Przondovirus› Klebsiella_phage_066053

TaxID: 2777402

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-63
PDB
Domain cluster: representative
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4exrA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.75 60.0 5.76e-01 100.0% 76.1%
3u1wA02 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.72 59.0 5.74e-01 100.0% 83.3%
3e99A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.67 59.0 4.46e-01 100.0% 85.1%
2i9xA00 3.30.1120.40 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › Stage V sporulation protein G 0.65 48.0 4.26e-01 81.7% 54.7%
1st8A01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.64 55.0 3.50e-01 100.0% 24.3%
3f8uB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 57.0 4.51e-01 100.0% 88.7%
5fgoA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 41.0 4.12e-01 73.3% 62.9%
4p04A01 2.60.40.3100 Mainly Beta › Sandwich › Immunoglobulin-like › Arylsulphate sulphotransferase monomer, N-terminal domain 0.64 52.0 4.31e-01 90.0% 69.8%
3iayA01 2.40.50.730 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.64 48.0 4.08e-01 81.7% 81.6%
4hj1B03 2.60.40.3770 Mainly Beta › Sandwich › Immunoglobulin-like › 0.63 43.0 3.82e-01 71.7% 68.9%
2ettA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.62 45.0 3.58e-01 78.3% 82.0%
3k59A01 2.40.50.590 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › DNA polymerase B, N domain, beta-barrel 0.62 47.0 4.21e-01 81.7% 83.5%
1k07A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.62 51.0 3.30e-01 90.0% 88.9%
3wyfE00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 49.0 3.79e-01 90.0% 39.4%
4ywzB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.61 49.0 3.77e-01 91.7% 87.0%
2oc3A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.61 48.0 3.12e-01 88.3% 43.0%
3fgqA01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.59 46.0 3.29e-01 85.0% 58.8%
3j7yD01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 42.0 3.51e-01 81.7% 42.5%
1tp6A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 50.0 4.07e-01 100.0% 92.1%
2ehgA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.58 41.0 3.13e-01 75.0% 97.3%
3f6gA01 3.30.160.740 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.58 43.0 4.36e-01 78.3% 84.5%
4mp8A01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.58 44.0 3.31e-01 85.0% 46.6%
4pifA00 2.100.10.30 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Jacalin-like lectin domain 0.58 49.0 3.70e-01 93.3% 89.2%
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 42.0 4.42e-01 96.7% 90.6%
2chrA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.57 42.0 3.34e-01 78.3% 82.7%
3sluB01 3.10.450.350 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 49.0 4.35e-01 100.0% 78.0%
3sjnA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.57 41.0 3.36e-01 78.3% 94.1%
2xswB00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.57 49.0 3.11e-01 98.3% 60.7%
3ci0J01 3.10.610.10 Alpha Beta › Roll › Pili subunits › GSPII I/J protein-like 0.57 49.0 4.16e-01 100.0% 71.2%
3gdoA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.57 43.0 3.14e-01 88.3% 83.9%
3bhcA01 3.30.460.20 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like 0.57 41.0 3.32e-01 78.3% 61.8%
2hzgB01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.57 41.0 3.15e-01 78.3% 77.6%
2mctA00 2.60.40.4250 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 43.0 3.68e-01 85.0% 82.4%
1g4wR02 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.56 47.0 3.28e-01 96.7% 51.1%
2opjA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.56 39.0 3.57e-01 75.0% 59.3%
3ip3A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.56 48.0 3.39e-01 100.0% 37.4%
1914A00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.55 43.0 3.16e-01 86.7% 36.3%
3e82E02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.54 44.0 3.20e-01 98.3% 68.5%
2acaA00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.53 41.0 3.08e-01 90.0% 66.7%
3o2uA01 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.53 46.0 3.43e-01 100.0% 38.9%
4dgwC00 2.60.40.2690 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 42.0 3.26e-01 90.0% 43.3%
5l37C00 2.40.50.220 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml 0.53 39.0 3.56e-01 83.3% 84.9%
3htxA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 44.0 4.13e-01 96.7% 93.4%
4fx9A03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.52 42.0 3.55e-01 95.0% 54.9%
2z13A00 2.30.29.170 Mainly Beta › Roll › PH-domain like › 0.52 37.0 3.12e-01 78.3% 43.6%
1a6aB01 3.10.320.10 Alpha Beta › Roll › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 0.51 35.0 3.18e-01 75.0% 49.4%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 40.0 4.05e-01 95.0% 88.5%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4929282 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.76 69.0 6.39e-01 100.0% 88.0%
5070387 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.73 65.0 6.06e-01 100.0% 89.3%
4946882 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.73 54.0 5.68e-01 85.0% 87.3%
4972327 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.71 63.0 5.44e-01 100.0% 95.8%
3988703 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.71 55.0 5.44e-01 85.0% 81.5%
4405445 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.70 61.0 5.84e-01 100.0% 88.6%
1140900 809.2.1.0 ↗ a+b two layers › BLIP-like › BT0923-like › BT0923-like 0.69 59.0 6.03e-01 100.0% 98.3%
4988831 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.69 52.0 5.38e-01 86.7% 89.1%
4986209 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.68 59.0 4.69e-01 98.3% 50.8%
5038444 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.68 59.0 5.67e-01 100.0% 88.6%
3587998 243.1.1.102 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF28180 0.67 58.0 4.89e-01 100.0% 90.5%
3281635 330.2.1.1 ↗ a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › Ribosomal_S30AE 0.67 56.0 4.76e-01 100.0% 63.6%
4342479 4178.1.1.0 ↗ beta sandwiches › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain 0.67 46.0 4.16e-01 71.7% 60.0%
5010129 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.66 50.0 5.24e-01 81.7% 98.2%
4964560 330.2.1.5 ↗ a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › PF29181 0.66 57.0 4.82e-01 100.0% 68.6%
4956007 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.66 54.0 4.47e-01 90.0% 69.5%
3598080 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.66 57.0 3.56e-01 100.0% 22.0%
4995606 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.66 51.0 4.43e-01 83.3% 74.4%
3397097 5.1.5.68 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › RAB3GAP2_N 0.65 58.0 3.51e-01 100.0% 20.0%
4989747 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.64 48.0 4.76e-01 81.7% 98.5%
4568161 283.2.1.18 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › Lipoprotein_17 0.64 49.0 4.51e-01 93.3% 63.7%
3281018 330.2.1.0 ↗ a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) 0.63 52.0 4.56e-01 100.0% 72.0%
5045089 330.2.1.5 ↗ a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › PF29181 0.61 53.0 4.54e-01 100.0% 73.0%
4960250 330.2.1.5 ↗ a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › PF29181 0.61 51.0 4.46e-01 100.0% 73.0%
5011932 330.2.1.5 ↗ a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › PF29181 0.61 51.0 4.40e-01 100.0% 66.7%
5008812 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.61 48.0 4.08e-01 90.0% 73.3%
5013768 330.2.1.5 ↗ a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › PF29181 0.60 51.0 4.46e-01 100.0% 74.7%
4952059 809.2.1.0 ↗ a+b two layers › BLIP-like › BT0923-like › BT0923-like 0.60 52.0 4.75e-01 100.0% 78.8%
3933230 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.60 43.0 3.37e-01 76.7% 42.3%
4983377 330.2.1.5 ↗ a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › PF29181 0.59 49.0 4.26e-01 100.0% 66.7%
3439912 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.59 42.0 3.64e-01 76.7% 52.0%
3876167 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.59 47.0 3.45e-01 90.0% 48.6%
4969099 246.3.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos 0.59 52.0 3.36e-01 100.0% 59.0%
3939024 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.59 43.0 2.96e-01 78.3% 59.1%
3232364 3335.1.1.0 ↗ beta barrels › Handle domain in transferrin-binding protein B › Handle domain in transferrin-binding protein B › Handle domain in transferrin-binding protein B 0.59 49.0 4.78e-01 91.7% 93.8%
3718119 2004.1.1.348 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SbcC_Walker_B 0.59 41.0 3.05e-01 75.0% 37.1%
5014865 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 46.0 3.81e-01 90.0% 51.3%
3305964 246.3.1.4 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos2 0.58 50.0 3.25e-01 98.3% 68.8%
3493129 220.1.1.248 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_32 0.58 47.0 4.17e-01 91.7% 97.8%
3592050 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 47.0 3.70e-01 93.3% 76.3%
4600893 4121.1.1.0 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.57 40.0 2.67e-01 73.3% 25.8%
3408648 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 47.0 4.03e-01 93.3% 88.0%
3926535 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.57 41.0 3.28e-01 76.7% 43.2%
4970559 330.2.1.5 ↗ a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › PF29181 0.57 48.0 4.20e-01 100.0% 70.0%
3427908 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.57 41.0 3.55e-01 76.7% 57.9%
3458138 375.1.1.131 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF702 0.56 44.0 4.36e-01 88.3% 100.0%
5062762 2.1.1.127 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti_2 0.56 43.0 3.58e-01 85.0% 63.6%
4967863 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.56 48.0 3.85e-01 100.0% 57.6%
3973929 243.4.1.0 ↗ a+b two layers › Cystatin-like › DsbC/DsbG N-terminal domain-like › DsbC/DsbG N-terminal domain-like 0.55 41.0 3.73e-01 83.3% 89.8%
3957539 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.55 43.0 3.40e-01 85.0% 44.0%
3934686 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.55 45.0 3.87e-01 90.0% 63.2%
3479861 7579.1.1.0 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases 0.55 40.0 2.60e-01 80.0% 50.2%
5039125 375.1.1.83 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-TFIIB 0.54 41.0 4.05e-01 88.3% 78.5%
3568302 220.1.1.28 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › hSac2 0.54 44.0 3.30e-01 98.3% 75.0%
3733469 375.1.1.26 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.53 41.0 3.19e-01 88.3% 37.9%
3975106 4121.1.1.1 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA 0.52 38.0 2.55e-01 78.3% 27.1%
None — 0.52 36.0 2.55e-01 76.7% 22.1%
3877924 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.52 44.0 3.98e-01 98.3% 77.6%
4054284 220.1.1.115 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_19 0.51 42.0 3.80e-01 98.3% 91.1%
4975981 2004.1.1.73 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 0.51 42.0 3.11e-01 98.3% 37.6%