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MW055912.1__QPX62483.1__SEA_TRUCKEE_19__00019

Bact-Vir

MW055912.1__QPX62483.1__SEA_TRUCKEE_19__00019

Identity

Accession:
MW055912 ↗
Kingdom:
phage

Quality

70.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Gordonvirus› Arthrobacter_phage_Truckee

TaxID: 2790984

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 132-268
PDB
D2 high residues 279-445
PDB
D3 medium residues 469-530_618-756
PDB
Domain cluster: rep: SR-VP_4-6_scaffold_141_2630357_prodigal-single.1__X__X__00142__D170-386
CATH (60)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4rshA00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.80 67.0 7.21e-01 91.5% 100.0%
1bwpA00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.79 68.0 6.65e-01 94.5% 84.4%
3p94A00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.77 68.0 6.80e-01 95.0% 89.7%
3milB00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.76 71.0 6.69e-01 97.0% 91.2%
4s1pA00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.75 66.0 6.94e-01 94.0% 100.0%
7br2D01 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.74 67.0 6.54e-01 94.5% 97.2%
8gr2A01 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.74 64.0 6.50e-01 89.6% 100.0%
2h3hA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.73 45.0 5.21e-01 95.5% 83.1%
3ilhA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.72 48.0 5.71e-01 97.0% 99.2%
4zylB00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.72 50.0 5.78e-01 93.5% 97.9%
7tjbA01 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.71 66.0 6.58e-01 98.0% 99.5%
1k66A00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.71 50.0 5.70e-01 95.5% 96.6%
3g68A02 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.71 45.0 5.22e-01 98.0% 87.6%
2q5cA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.71 35.0 4.91e-01 98.0% 97.9%
5lnmA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.66 45.0 5.12e-01 94.5% 91.3%
2jfvA01 3.40.50.1860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.66 40.0 4.46e-01 100.0% 75.2%
1d7aA00 3.40.50.1970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.65 45.0 5.00e-01 95.5% 88.2%
1v72A02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.63 48.0 4.53e-01 97.0% 65.8%
7en7A01 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.63 43.0 4.46e-01 98.0% 73.7%
3dmyA03 3.40.50.261 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Succinyl-CoA synthetase domains 0.63 49.0 5.37e-01 94.5% 99.4%
4rk0A02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.62 38.0 4.55e-01 96.5% 90.3%
5f1yA02 3.50.30.60 Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › LD-carboxypeptidase A C-terminal domain-like 0.62 39.0 4.19e-01 93.0% 70.8%
5im4F00 3.40.50.510 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphotransferase system, mannose-type IIA component 0.60 35.0 4.24e-01 95.5% 87.0%
4mcjG00 3.40.50.450 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.60 40.0 4.47e-01 92.5% 86.4%
3gdwB00 3.40.50.510 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphotransferase system, mannose-type IIA component 0.60 37.0 4.30e-01 98.0% 87.0%
5t3uB00 3.40.50.510 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphotransferase system, mannose-type IIA component 0.60 35.0 4.13e-01 98.5% 84.2%
3t38A02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.60 37.0 4.64e-01 97.0% 98.4%
2f1kA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.59 44.0 4.84e-01 95.0% 93.3%
3n0xA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.59 42.0 4.64e-01 86.6% 89.6%
3hpxA01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.59 48.0 4.20e-01 86.1% 88.3%
4c0rA02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.59 28.0 3.65e-01 78.6% 82.4%
3b48F00 3.40.50.510 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphotransferase system, mannose-type IIA component 0.58 36.0 4.31e-01 99.0% 92.6%
6uutB01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.58 47.0 4.82e-01 100.0% 88.2%
3nvaA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 51.0 4.55e-01 96.0% 93.4%
5kc8A02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.58 42.0 4.58e-01 93.0% 91.4%
4xijA01 3.40.50.10860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 0.58 34.0 4.11e-01 97.5% 89.1%
6feaB01 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.57 37.0 4.29e-01 94.5% 89.7%
3ihlB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 51.0 4.92e-01 96.0% 99.6%
1rliD00 3.40.50.360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain 0.56 45.0 4.80e-01 94.5% 100.0%
3lk7A02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.56 48.0 4.79e-01 91.0% 89.8%
3u7qB01 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.56 36.0 4.09e-01 95.0% 87.0%
3h11A00 3.40.50.1460 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 50.0 4.94e-01 98.5% 96.7%
3wnkA02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.55 43.0 3.67e-01 83.6% 94.2%
2uz1A03 3.40.50.970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.54 40.0 4.15e-01 94.0% 79.7%
1xs5A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.54 36.0 4.24e-01 85.6% 98.5%
3fd3A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.54 30.0 3.90e-01 78.1% 99.1%
1rvkA02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.54 43.0 3.95e-01 84.1% 75.8%
4eqbA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.54 41.0 4.45e-01 78.1% 100.0%
1dtnA02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.53 42.0 4.09e-01 83.6% 90.0%
4h0cA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 47.0 4.64e-01 94.5% 90.5%
2ovlA02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.52 42.0 4.05e-01 83.6% 90.0%
1bqcA00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.52 47.0 4.15e-01 99.0% 99.7%
6dtuA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.52 40.0 4.16e-01 79.1% 96.7%
4ov4A01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.51 45.0 4.06e-01 94.0% 91.7%
3iprA00 3.40.50.510 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphotransferase system, mannose-type IIA component 0.51 35.0 4.06e-01 74.6% 100.0%
4k9qA03 3.40.50.970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.51 40.0 4.11e-01 82.1% 88.1%
2v4uA00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.51 45.0 4.11e-01 96.0% 97.0%
1u1jA01 3.20.20.210 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › 0.51 44.0 3.51e-01 92.5% 90.3%
3bc9A02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.51 45.0 4.01e-01 98.0% 99.7%
1d9yA02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.50 37.0 4.20e-01 78.1% 100.0%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1411712 2007.5.1.8 ↗ a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL_2 0.80 67.0 7.21e-01 91.5% 100.0%
3534803 2007.5.1.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL 0.74 69.0 6.39e-01 95.5% 86.7%
3284969 2007.5.1.8 ↗ a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL_2 0.74 69.0 6.42e-01 96.0% 97.9%
4938804 2007.3.1.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Succinyl-CoA synthetase domains › Succinyl-CoA synthetase domains 0.73 48.0 5.83e-01 96.5% 100.0%
4870260 2007.5.1.5 ↗ a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › DUF459 0.72 67.0 6.54e-01 97.5% 95.8%
3002691 2007.5.1.5 ↗ a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › DUF459 0.72 66.0 6.41e-01 97.0% 93.7%
5054361 2007.5.1.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase 0.71 66.0 5.66e-01 97.0% 88.9%
3741496 2007.1.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg 0.69 46.0 5.37e-01 97.5% 95.7%
3550502 2007.1.9.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) › AIRC 0.69 46.0 5.09e-01 95.0% 83.7%
3945689 2007.6.1.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › SIS 0.67 45.0 4.46e-01 98.0% 64.3%
5069208 2007.3.1.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Succinyl-CoA synthetase domains › Succinyl-CoA synthetase domains › Ligase_CoA 0.66 47.0 5.10e-01 95.0% 85.3%
4650998 3755.3.1.562 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Exonuc_VII_L 0.66 43.0 3.97e-01 97.0% 50.8%
4264208 2007.1.9.5 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) › Exonuc_VII_L 0.64 43.0 4.41e-01 97.0% 68.0%
4888494 7577.1.1.8 ↗ a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Beta_elim_lyase 0.63 47.0 4.39e-01 97.0% 61.3%
4431536 2007.1.7.2 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Rossmann-like domain in dehydroquinate synthase-like enzymes › DHQ_synthase 0.62 43.0 4.61e-01 79.1% 81.8%
3980758 2007.3.1.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Succinyl-CoA synthetase domains › Succinyl-CoA synthetase domains › Ligase_CoA 0.62 50.0 5.23e-01 97.0% 91.4%
4266161 2003.1.1.85 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › SpnB_Rossmann 0.62 51.0 4.76e-01 96.0% 71.2%
4246539 2007.1.7.2 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Rossmann-like domain in dehydroquinate synthase-like enzymes › DHQ_synthase 0.62 42.0 4.54e-01 80.6% 79.4%
3730170 2003.1.1.143 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NmrA, NAD_binding_10 0.61 54.0 4.45e-01 95.5% 59.4%
3315368 129.1.1.0 ↗ alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like 0.61 44.0 4.51e-01 75.1% 86.0%
359061 2010.1.1.3 ↗ a/b three-layered sandwiches › EDD domain › EDD domain › EDD domain › EIIA-man 0.60 37.0 4.30e-01 98.0% 87.0%
None — 0.60 52.0 4.07e-01 94.0% 85.1%
3961710 2003.1.1.67 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NAD_binding_10 0.59 52.0 4.22e-01 93.5% 54.4%
4029267 7579.1.1.42 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Hydrolase_4 0.59 53.0 4.02e-01 95.0% 84.0%
9184 2003.1.1.147 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › PDH_N, F420_oxidored 0.59 44.0 4.84e-01 95.0% 93.3%
4501624 2003.1.1.8 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › G6PD_N 0.59 53.0 5.19e-01 95.5% 99.5%
3604894 2004.1.1.141 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CTP_synth_N 0.59 53.0 4.53e-01 97.0% 87.6%
3594528 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.59 53.0 4.74e-01 98.5% 96.5%
3945532 2004.1.1.465 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MipZ, AAA_31 0.58 52.0 4.79e-01 95.5% 100.0%
3963275 2010.1.1.3 ↗ a/b three-layered sandwiches › EDD domain › EDD domain › EDD domain › EIIA-man 0.58 35.0 4.16e-01 95.5% 86.7%
3957203 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.58 48.0 4.22e-01 86.1% 88.2%
3724973 2006.1.6.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA 0.58 52.0 4.88e-01 96.0% 96.7%
4928635 2004.1.1.141 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CTP_synth_N 0.58 51.0 4.72e-01 95.5% 93.4%
4022539 2003.1.5.35 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › LCM 0.58 52.0 4.51e-01 97.0% 72.8%
3727502 7579.1.1.44 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_6 0.57 49.0 3.91e-01 90.5% 87.6%
3604182 2007.1.2.13 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_6 0.57 40.0 4.46e-01 90.0% 89.4%
4133209 2002.1.1.25 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HMGL-like 0.57 48.0 3.94e-01 88.1% 75.4%
3697509 7568.1.1.14 ↗ a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain › NIBRIN_BRCT_II 0.57 35.0 4.24e-01 95.5% 96.0%
3658845 2002.1.2.3 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › Hypothetical protein Cthe_0052 › HMGL-like 0.57 41.0 4.07e-01 72.6% 83.4%
3598325 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.56 45.0 3.85e-01 84.6% 82.1%
3929333 2006.1.6.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like 0.56 51.0 5.17e-01 98.5% 99.5%
3375177 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.56 42.0 3.67e-01 76.6% 58.4%
4965676 7579.1.1.47 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › BD-FAE 0.56 51.0 4.59e-01 97.5% 85.2%
4975614 2006.1.2.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › DHH phosphoesterases › DHH 0.55 47.0 4.31e-01 89.6% 83.5%
5005618 2003.1.1.123 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › DUF166 0.55 43.0 4.53e-01 97.5% 91.1%
5060054 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.55 38.0 4.09e-01 76.6% 82.4%
3498928 2007.1.4.9 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain › Pacs-1 0.55 43.0 4.59e-01 97.0% 95.4%
3838559 2006.1.3.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain 0.55 44.0 4.71e-01 96.5% 98.3%
3481184 2007.1.4.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain 0.54 42.0 4.56e-01 96.5% 97.1%
4961401 2002.1.1.174 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MR_MLE_C 0.54 43.0 3.88e-01 84.1% 71.4%
4387716 2003.4.1.1 ↗ a/b three-layered sandwiches › Rossmann-like › Tryptophan synthase beta subunit-like PLP-dependent enzymes › Tryptophan synthase beta subunit-like PLP-dependent enzymes › PALP 0.54 46.0 3.86e-01 90.5% 89.6%
4038040 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.53 43.0 3.36e-01 85.6% 56.0%
None — 0.53 40.0 4.36e-01 77.6% 97.6%
3884122 2002.1.1.174 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MR_MLE_C 0.53 42.0 3.65e-01 83.6% 71.9%
4010166 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.52 35.0 4.04e-01 85.1% 92.4%
5040728 2004.1.1.146 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase 0.52 46.0 4.47e-01 95.0% 94.8%
3290958 2002.1.1.174 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MR_MLE_C 0.52 43.0 3.88e-01 88.6% 69.1%
4436960 2002.1.1.108 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › NMO 0.51 44.0 3.57e-01 93.5% 84.2%
4353758 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.51 43.0 3.76e-01 88.1% 83.0%
3330856 2002.1.1.13 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Aldo_ket_red 0.51 42.0 3.57e-01 88.6% 80.5%
None — 0.51 46.0 3.54e-01 99.5% 60.9%
3966156 7523.1.1.28 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_8 0.51 39.0 4.08e-01 81.1% 90.0%
5045091 2002.1.1.16 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Bac_luciferase 0.50 43.0 3.90e-01 92.5% 91.4%
D4 medium residues 531-617
PDB
Domain cluster: representative
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4gaaA01 2.60.40.1730 Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain 0.62 42.0 3.27e-01 100.0% 31.6%
5iu1B00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.60 43.0 4.01e-01 75.9% 91.1%
3fc7A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.58 41.0 4.00e-01 75.9% 100.0%
4mn5A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.58 43.0 4.09e-01 79.3% 92.2%
1mc0A01 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.56 43.0 3.55e-01 81.6% 67.1%
6p58A00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.56 41.0 3.50e-01 79.3% 66.7%
2qybA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.55 41.0 3.47e-01 79.3% 68.9%
1xe1A00 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.54 42.0 4.24e-01 100.0% 83.5%
5xgbA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 41.0 3.74e-01 80.5% 89.0%
2jheA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 40.0 3.74e-01 77.0% 85.2%
4f3lA03 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 39.0 3.57e-01 77.0% 88.5%
1f5mA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.54 40.0 3.27e-01 80.5% 61.9%
3c8cB02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 38.0 3.57e-01 75.9% 75.2%
3a0rA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 40.0 3.76e-01 79.3% 93.4%
4zgnB00 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.53 44.0 4.20e-01 94.3% 77.7%
3isrA02 2.60.40.2250 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 39.0 3.81e-01 94.3% 69.0%
2b02A01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 40.0 3.77e-01 79.3% 100.0%
1ll8A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 39.0 3.62e-01 78.2% 96.5%
5w1eA01 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.53 39.0 3.11e-01 79.3% 74.9%
1p97A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 40.0 3.69e-01 81.6% 94.7%
2g7uC02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.52 39.0 3.15e-01 79.3% 74.2%
3cueB00 3.30.1380.20 Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › Trafficking protein particle complex subunit 3 0.52 42.0 3.41e-01 87.4% 60.5%
2apoA03 3.30.70.3190 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 40.0 3.98e-01 93.1% 80.4%
2e8yA01 2.60.40.2320 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 39.0 3.81e-01 100.0% 73.3%
2xswB00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.51 39.0 2.69e-01 81.6% 86.8%
3h7lA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 40.0 4.00e-01 100.0% 84.9%
2wyhA05 2.60.40.2210 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 43.0 3.83e-01 100.0% 84.3%
2kdkA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.50 37.0 3.49e-01 79.3% 96.3%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3249576 11.1.1.698 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_TgrO1 0.61 45.0 4.55e-01 100.0% 81.2%
4519252 1.1.7.10 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Flavokinase 0.57 47.0 4.34e-01 100.0% 69.6%
4995187 1.1.7.14 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › CTP-dep_RFKase 0.57 51.0 4.60e-01 100.0% 94.2%
5082348 223.1.1.3 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › GAF 0.57 41.0 3.49e-01 77.0% 63.3%
5053339 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.57 40.0 3.70e-01 74.7% 73.0%
5019984 12.1.1.114 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › DUF2341 0.56 45.0 4.40e-01 100.0% 84.2%
5008034 223.1.1.25 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.56 41.0 3.64e-01 78.2% 81.6%
4570657 223.1.1.23 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › GAF_2 0.56 42.0 3.44e-01 81.6% 64.1%
3627492 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.55 40.0 3.92e-01 78.2% 100.0%
4051617 1.1.7.9 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.54 48.0 4.28e-01 100.0% 70.4%
3281357 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.53 40.0 3.47e-01 82.8% 96.6%
3688227 223.1.1.3 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › GAF 0.53 38.0 3.04e-01 78.2% 64.0%
3874549 10.21.1.1 ↗ beta sandwiches › jelly-roll › Jelly-roll domain in ADAMTS13 › Jelly-roll domain in ADAMTS13 › ADAMTS_spacer1 0.53 43.0 3.91e-01 93.1% 68.8%
3412365 10.21.1.1 ↗ beta sandwiches › jelly-roll › Jelly-roll domain in ADAMTS13 › Jelly-roll domain in ADAMTS13 › ADAMTS_spacer1 0.52 43.0 3.82e-01 94.3% 63.0%
3970434 223.1.1.3 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › GAF 0.52 37.0 3.25e-01 77.0% 75.2%
4929683 12.2.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Hyaluronate lyase-like, C-terminal domain › Hyaluronate lyase-like, C-terminal domain 0.52 38.0 3.62e-01 98.9% 63.6%
4001641 10.21.1.1 ↗ beta sandwiches › jelly-roll › Jelly-roll domain in ADAMTS13 › Jelly-roll domain in ADAMTS13 › ADAMTS_spacer1 0.51 42.0 3.67e-01 94.3% 66.4%
3612888 304.31.1.0 ↗ a+b two layers › Alpha-beta plaits › HMG-CoA reductase › NAD-binding domain of HMG-CoA reductase 0.50 41.0 3.74e-01 92.0% 80.0%
3731275 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.50 37.0 2.99e-01 81.6% 74.0%