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MW055913.1__QPX62613.1__SEA_WOLLYPOG_62__00062
Bact-VirMW055913.1__QPX62613.1__SEA_WOLLYPOG_62__00062
Identity
- Accession:
- MW055913 ↗
- Kingdom:
- phage
Quality
84.0
mean pLDDT
Taxonomy
TaxID: 2790985
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-62
Domain cluster:
representative
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1whqA01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.67 | 43.0 | 4.05e-01 | 100.0% | 54.9% |
| 2vf9A00 | 3.30.380.10 | Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein | 0.65 | 55.0 | 4.36e-01 | 100.0% | 49.6% |
| 1aq3A00 | 3.30.380.10 | Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein | 0.62 | 52.0 | 4.16e-01 | 100.0% | 50.4% |
| 1dv2A02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.62 | 55.0 | 3.47e-01 | 100.0% | 28.0% |
| 1jpyX00 | 2.10.90.10 | Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines | 0.61 | 39.0 | 3.12e-01 | 87.9% | 31.6% |
| 2b9dA01 | 3.30.160.330 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.61 | 39.0 | 4.53e-01 | 98.3% | 97.4% |
| 4rx6D00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 53.0 | 4.39e-01 | 100.0% | 71.0% |
| 1fi8C00 | 2.60.40.550 | Mainly Beta › Sandwich › Immunoglobulin-like › Ecotin | 0.60 | 37.0 | 3.40e-01 | 84.5% | 44.9% |
| 5u1xA02 | 2.60.490.10 | Mainly Beta › Sandwich › atp-gated p2x4 ion channel fold › atp-gated p2x4 ion channel domain | 0.58 | 38.0 | 2.47e-01 | 98.3% | 14.2% |
| 3bzwF00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.58 | 44.0 | 2.91e-01 | 81.0% | 63.0% |
| 4d8pB01 | 3.10.320.10 | Alpha Beta › Roll › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 | 0.57 | 33.0 | 2.77e-01 | 86.2% | 31.4% |
| 4tw1B00 | 2.70.240.10 | Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA | 0.56 | 38.0 | 2.48e-01 | 70.7% | 73.8% |
| 2hj1A00 | 3.10.20.280 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › RnfH-like | 0.55 | 38.0 | 3.53e-01 | 100.0% | 54.5% |
| 8enbA01 | 2.10.90.10 | Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines | 0.54 | 34.0 | 3.13e-01 | 74.1% | 44.6% |
| 3o2iA00 | 3.30.70.2710 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 39.0 | 3.36e-01 | 100.0% | 47.3% |
| 2qejD01 | 3.10.20.120 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.54 | 39.0 | 3.17e-01 | 94.8% | 39.0% |
| 5axmB00 | 3.30.70.3000 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) | 0.53 | 44.0 | 3.02e-01 | 100.0% | 51.5% |
| 2yxdA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.53 | 35.0 | 2.44e-01 | 96.6% | 22.3% |
| 1l3iA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.53 | 31.0 | 2.28e-01 | 89.7% | 17.3% |
| 6gdxA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 47.0 | 3.82e-01 | 100.0% | 69.2% |
| 3mb5A02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.52 | 33.0 | 2.36e-01 | 77.6% | 19.2% |
| 8f5pE01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.52 | 43.0 | 2.66e-01 | 96.6% | 18.4% |
| 6lofA00 | 2.40.155.10 | Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein | 0.52 | 42.0 | 3.08e-01 | 91.4% | 47.5% |
| 2z8lA01 | 3.10.20.120 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.51 | 37.0 | 3.08e-01 | 100.0% | 41.0% |
| 1iicA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.51 | 45.0 | 3.22e-01 | 100.0% | 55.5% |
ECOD (48)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4245972 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.70 | 51.0 | 3.49e-01 | 100.0% | 22.0% |
| 4466937 | 11.1.1.248 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › bMG6 | 0.67 | 56.0 | 4.34e-01 | 100.0% | 42.3% |
| 3452171 | 2484.1.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 | 0.67 | 55.0 | 3.78e-01 | 96.6% | 75.1% |
| 3223309 | 11.1.1.934 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N, Arrestin_C | 0.66 | 58.0 | 3.71e-01 | 100.0% | 29.8% |
| 3255418 | 2011.1.1.8 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M28 | 0.66 | 46.0 | 2.71e-01 | 86.2% | 10.9% |
| 169039 | 265.1.1.1 ↗ | a+b two layers › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › Levi_coat | 0.65 | 55.0 | 4.36e-01 | 100.0% | 49.6% |
| 3679206 | 2484.1.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 | 0.64 | 54.0 | 3.26e-01 | 98.3% | 31.4% |
| 3625109 | 11.1.1.9 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N | 0.64 | 56.0 | 3.87e-01 | 100.0% | 57.5% |
| 3717787 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.63 | 49.0 | 2.99e-01 | 86.2% | 37.0% |
| 5071965 | 512.1.1.1 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st | 0.62 | 37.0 | 3.18e-01 | 93.1% | 35.8% |
| 3736890 | 5.1.5.236 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_WDR3_1st | 0.62 | 44.0 | 2.47e-01 | 75.9% | 42.3% |
| 3411517 | 11.1.1.9 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N | 0.62 | 52.0 | 3.78e-01 | 100.0% | 60.0% |
| 4946616 | 512.1.1.2 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd | 0.61 | 41.0 | 3.61e-01 | 100.0% | 44.4% |
| 3939294 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.60 | 51.0 | 3.19e-01 | 100.0% | 20.0% |
| 3176053 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.60 | 38.0 | 2.89e-01 | 100.0% | 27.7% |
| 3741194 | 2484.1.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 | 0.60 | 51.0 | 3.14e-01 | 100.0% | 49.5% |
| 3925088 | 7026.1.1.0 ↗ | beta meanders › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 | 0.60 | 41.0 | 2.80e-01 | 81.0% | 19.3% |
| 3611566 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.59 | 47.0 | 2.90e-01 | 93.1% | 15.7% |
| 4635290 | 4967.1.1.25 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › Intron_maturas2+MatK_N | 0.59 | 51.0 | 3.08e-01 | 100.0% | 33.7% |
| 4088089 | 304.48.1.39 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › MatK_N | 0.58 | 51.0 | 3.23e-01 | 100.0% | 40.3% |
| 3476114 | 2484.1.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 | 0.58 | 49.0 | 3.03e-01 | 100.0% | 33.8% |
| 3236040 | 11.1.1.9 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N | 0.58 | 47.0 | 3.44e-01 | 100.0% | 57.9% |
| 4966168 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.58 | 50.0 | 3.14e-01 | 100.0% | 58.6% |
| 3940319 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.57 | 37.0 | 2.32e-01 | 100.0% | 11.0% |
| 3740450 | 328.1.1.3 ↗ | a+b two layers › IF3-like › AlbA-like › AlbA-like › Rpp20 | 0.57 | 32.0 | 2.82e-01 | 89.7% | 32.2% |
| 4968312 | 2484.1.1.66 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_3 | 0.57 | 45.0 | 3.19e-01 | 94.8% | 67.8% |
| 3612987 | 206.1.3.12 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › TTL | 0.56 | 39.0 | 2.94e-01 | 100.0% | 27.5% |
| 3691484 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.55 | 43.0 | 2.93e-01 | 87.9% | 79.1% |
| 5035417 | 3010.1.1.0 ↗ | a/b three-layered sandwiches › C-terminal subdomain in Lon-related proteases catalytic domains › C-terminal subdomain in Lon-related proteases catalytic domains › C-terminal subdomain in Lon-related proteases catalytic domains | 0.55 | 40.0 | 3.48e-01 | 79.3% | 83.2% |
| 5052711 | 304.55.2.0 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Transposase IS200-like | 0.55 | 46.0 | 3.64e-01 | 98.3% | 84.3% |
| 4635289 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.55 | 50.0 | 2.96e-01 | 100.0% | 31.7% |
| 3576905 | 11.1.1.1009 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF26432 | 0.55 | 37.0 | 2.16e-01 | 96.6% | 7.8% |
| 3654114 | 2484.1.1.26 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Piwi | 0.54 | 42.0 | 2.99e-01 | 89.7% | 61.0% |
| 4156749 | 3234.1.1.2 ↗ | a+b two layers › GerBC protein › GerBC protein › GerBC protein › Spore_GerAC, Spore_GerAC_N | 0.54 | 40.0 | 2.65e-01 | 94.8% | 17.5% |
| 5060622 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.53 | 46.0 | 3.85e-01 | 100.0% | 70.5% |
| 4951452 | 212.1.1.18 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Lon_C | 0.53 | 39.0 | 3.17e-01 | 79.3% | 89.6% |
| 4990821 | 7571.1.1.1 ↗ | a/b three-layered sandwiches › Formyltransferase › Formyltransferase › Formyltransferase › Formyl_trans_N | 0.53 | 46.0 | 3.00e-01 | 100.0% | 22.5% |
| 4189845 | 4964.1.1.0 ↗ | alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I | 0.53 | 40.0 | 2.81e-01 | 86.2% | 53.2% |
| 4931347 | 5001.1.1.12 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Heliorhodopsin | 0.53 | 47.0 | 3.04e-01 | 100.0% | 41.5% |
| 9346 | 2003.1.5.179 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PF30636 | 0.53 | 31.0 | 2.27e-01 | 89.7% | 17.2% |
| 4351239 | 4967.1.1.6 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › Intron_maturas2 | 0.53 | 42.0 | 3.19e-01 | 87.9% | 38.5% |
| 3236717 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 33.0 | 2.82e-01 | 100.0% | 34.5% |
| 3963812 | 3170.1.1.0 ↗ | a+b two layers › uncharacterized protein YP_926445.1 › uncharacterized protein YP_926445.1 › uncharacterized protein YP_926445.1 | 0.52 | 37.0 | 3.12e-01 | 79.3% | 67.3% |
| 4187457 | 4967.1.1.6 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › Intron_maturas2 | 0.52 | 41.0 | 3.13e-01 | 87.9% | 38.5% |
| 4873215 | 1.1.13.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DUF2001 | 0.51 | 38.0 | 3.06e-01 | 87.9% | 75.0% |
| 5019602 | 212.1.1.0 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like | 0.51 | 40.0 | 3.30e-01 | 93.1% | 70.0% |
| 5052927 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 41.0 | 3.06e-01 | 93.1% | 37.0% |
| 3621484 | 385.1.1.0 ↗ | few secondary structure elements › Cystine-knot cytokines › Cystine-knot cytokines › Cystine-knot cytokines | 0.50 | 32.0 | 2.57e-01 | 72.4% | 29.4% |