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MW055913.1__QPX62624.1__SEA_WOLLYPOG_75__00075
Bact-VirMW055913.1__QPX62624.1__SEA_WOLLYPOG_75__00075
Identity
- Accession:
- MW055913 ↗
- Kingdom:
- phage
Quality
69.5
mean pLDDT
Taxonomy
TaxID: 2790985
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 12-130_220-238
Domain cluster:
representative
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4g3hC00 | 3.40.800.10 | Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Ureohydrolase domain | 0.67 | 45.0 | 3.44e-01 | 86.2% | 30.6% |
| 3i8bA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.62 | 43.0 | 3.43e-01 | 71.7% | 63.0% |
| 2yhaA02 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.60 | 46.0 | 3.94e-01 | 81.2% | 93.9% |
| 1nhpA03 | 3.30.390.30 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain | 0.58 | 33.0 | 3.62e-01 | 100.0% | 68.1% |
| 3cgbA03 | 3.30.390.30 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain | 0.56 | 32.0 | 3.58e-01 | 99.3% | 70.0% |
| 4pswA02 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.56 | 35.0 | 3.57e-01 | 93.5% | 63.9% |
| 4dkwA00 | 3.30.420.280 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.56 | 48.0 | 4.24e-01 | 90.6% | 68.6% |
| 3kd4A01 | 2.60.40.3140 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 40.0 | 3.44e-01 | 73.9% | 76.9% |
| 6oziB00 | 3.30.2170.10 | Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily | 0.55 | 38.0 | 3.14e-01 | 71.0% | 42.3% |
| 1yqzA03 | 3.30.390.30 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain | 0.55 | 31.0 | 3.44e-01 | 99.3% | 69.4% |
| 3nqzA01 | 3.10.450.490 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 30.0 | 3.55e-01 | 100.0% | 81.3% |
| 1lshA03 | 2.20.50.20 | Mainly Beta › Single Sheet › Outer Surface Protein A; domain 2 › Lipovitellin. Chain A, domain 3 | 0.54 | 30.0 | 3.60e-01 | 81.9% | 79.6% |
| 4mdaA00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.53 | 40.0 | 3.56e-01 | 79.0% | 73.0% |
| 2cduA03 | 3.30.390.30 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain | 0.53 | 31.0 | 3.40e-01 | 100.0% | 69.0% |
| 1h7sA01 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.51 | 41.0 | 3.71e-01 | 86.2% | 97.9% |
| 1k8kD02 | 3.30.1460.20 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.50 | 29.0 | 3.03e-01 | 86.2% | 57.3% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3396717 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.73 | 48.0 | 5.71e-01 | 86.2% | 96.8% |
| 3961733 | 330.10.1.0 ↗ | a+b two layers › dsRBD-like › Heterocyclase TruD C-terminal domain › Heterocyclase TruD C-terminal domain | 0.61 | 35.0 | 4.12e-01 | 100.0% | 84.4% |
| 3601683 | 5084.5.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin | 0.60 | 29.0 | 2.28e-01 | 89.9% | 19.9% |
| 5031452 | 2484.1.1.18 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 | 0.59 | 40.0 | 4.70e-01 | 82.6% | 100.0% |
| 4948943 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.56 | 31.0 | 4.05e-01 | 96.4% | 96.2% |
| 185684 | 2484.1.1.77 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_6C | 0.56 | 48.0 | 4.24e-01 | 90.6% | 68.6% |
| 4990431 | 2484.1.1.43 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 | 0.56 | 42.0 | 3.59e-01 | 78.3% | 86.8% |
| 3718117 | 2484.1.1.43 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 | 0.55 | 38.0 | 3.02e-01 | 71.7% | 38.5% |
| 4375978 | 2484.1.1.9 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve | 0.55 | 37.0 | 4.17e-01 | 71.0% | 91.4% |
| 3924888 | 2484.1.1.4 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H | 0.53 | 38.0 | 3.52e-01 | 73.2% | 86.3% |
| 5062515 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.52 | 37.0 | 3.80e-01 | 85.5% | 74.8% |
| 3938447 | 2484.1.1.4 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H | 0.51 | 37.0 | 3.48e-01 | 74.6% | 86.1% |
D2
medium
residues 131-193
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1xkoB00 | 3.40.1550.10 | Alpha Beta › 3-Layer(aba) Sandwich › Chemotaxis protein chec › CheC-like | 0.70 | 49.0 | 3.66e-01 | 74.6% | 40.3% |
| 4c23B02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.67 | 49.0 | 3.32e-01 | 77.8% | 58.1% |
| 2wh5A00 | 1.20.80.10 | Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › | 0.66 | 47.0 | 4.15e-01 | 74.6% | 98.9% |
| 1m3sB00 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.59 | 48.0 | 3.40e-01 | 87.3% | 63.9% |
| 2m4gA00 | 6.10.20.70 | Special › Helix non-globular › Arc Repressor Mutant, subunit A › | 0.55 | 39.0 | 3.70e-01 | 76.2% | 62.7% |
| 2ruhA00 | 1.10.245.10 | Mainly Alpha › Orthogonal Bundle › MDM2 › SWIB/MDM2 domain | 0.53 | 37.0 | 3.01e-01 | 76.2% | 64.9% |
| 2lfhA00 | 4.10.280.10 | Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Helix-loop-helix DNA-binding domain | 0.52 | 39.0 | 3.81e-01 | 79.4% | 83.8% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3252883 | 193.1.1.0 ↗ | alpha bundles › CH domain-like › Calponin-homology domain-like › Calponin-homology domain-like | 0.76 | 58.0 | 4.57e-01 | 82.5% | 94.6% |
| 3309440 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.73 | 54.0 | 4.06e-01 | 79.4% | 88.0% |
| 4794720 | 148.1.1.6 ↗ | alpha arrays › Histone-like › Histone-related › Histone › TFIID-31kDa | 0.67 | 49.0 | 4.59e-01 | 77.8% | 65.8% |
| 4949365 | 101.1.1.99 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DUF4096 | 0.64 | 45.0 | 3.95e-01 | 73.0% | 100.0% |
| 4028217 | 207.1.1.20 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_4 | 0.64 | 50.0 | 3.26e-01 | 87.3% | 41.6% |
| 4945441 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.63 | 50.0 | 3.83e-01 | 92.1% | 38.2% |
| 3355024 | 137.1.1.15 ↗ | alpha bundles › A DNA-binding domain in eukaryotic transcription factors › A DNA-binding domain in eukaryotic transcription factors › A DNA-binding domain in eukaryotic transcription factors › FmiP_Thoc5 | 0.61 | 45.0 | 4.72e-01 | 82.5% | 89.1% |
| 4020548 | 7579.1.1.58 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › DUF829 | 0.57 | 48.0 | 3.07e-01 | 92.1% | 91.5% |
| 3426912 | 101.1.1.121 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 | 0.57 | 38.0 | 3.52e-01 | 73.0% | 53.8% |
| None | — | 0.55 | 38.0 | 3.88e-01 | 73.0% | 90.0% |