←Back to structures
MW057854.1__QPB11947.1__X__00038
Bact-VirMW057854.1__QPB11947.1__X__00038
Identity
- Accession:
- MW057854 ↗
- Kingdom:
- phage
Quality
92.5
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Autographivirales›
Autotranscriptaviridae›
Solymavirus›
Providencia_phage_PSTCR2
TaxID: 2783544
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-39
Domain cluster:
representative
CATH (41)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4hteA03 | 1.10.167.30 | Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › | 0.88 | 71.0 | 5.40e-01 | 100.0% | 40.0% |
| 3fxdB00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.87 | 76.0 | 6.43e-01 | 100.0% | 60.3% |
| 3icxA01 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.87 | 73.0 | 5.76e-01 | 100.0% | 46.7% |
| 1hr5A00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.87 | 72.0 | 6.58e-01 | 100.0% | 70.8% |
| 1yxrA01 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.85 | 71.0 | 5.66e-01 | 100.0% | 52.7% |
| 5ffdA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.85 | 72.0 | 4.83e-01 | 100.0% | 61.3% |
| 1l5jA03 | 3.40.1060.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aconitase; Domain 2 › Aconitase, Domain 2 | 0.83 | 70.0 | 4.45e-01 | 100.0% | 20.8% |
| 5jrcA00 | 1.20.58.2140 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.83 | 71.0 | 4.43e-01 | 100.0% | 22.0% |
| 1x4tA01 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.82 | 70.0 | 5.98e-01 | 100.0% | 67.2% |
| 2hepA00 | 1.10.287.540 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.82 | 67.0 | 6.49e-01 | 100.0% | 85.7% |
| 2pl2A00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.81 | 67.0 | 4.22e-01 | 100.0% | 18.0% |
| 2rp4A00 | 6.10.280.60 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Transcription factor p53, C-terminal domain | 0.81 | 67.0 | 5.45e-01 | 100.0% | 49.3% |
| 1st6A03 | 1.20.120.810 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Vinculin, Vh2 four-helix bundle | 0.80 | 67.0 | 4.07e-01 | 100.0% | 16.6% |
| 2kwhA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.80 | 67.0 | 5.83e-01 | 100.0% | 62.5% |
| 4asvA00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.79 | 64.0 | 5.10e-01 | 100.0% | 49.4% |
| 1zbpA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.79 | 64.0 | 4.90e-01 | 97.1% | 40.0% |
| 3u4qA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.77 | 63.0 | 3.84e-01 | 100.0% | 14.9% |
| 7zxkC01 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.76 | 65.0 | 4.30e-01 | 100.0% | 26.0% |
| 1go3F02 | 6.10.140.10 | Special › Helix non-globular › Helix Hairpins › | 0.76 | 62.0 | 5.79e-01 | 97.1% | 72.3% |
| 5c8aA01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.74 | 63.0 | 4.94e-01 | 100.0% | 47.4% |
| 4flbA00 | 1.25.40.90 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.74 | 59.0 | 4.08e-01 | 94.3% | 26.7% |
| 2x1lB02 | 2.170.220.10 | Mainly Beta › Beta Complex › Methionyl-trna Synthetase; domain 2 › | 0.73 | 62.0 | 4.88e-01 | 100.0% | 46.1% |
| 6yz2A01 | 1.20.120.350 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C | 0.72 | 56.0 | 3.98e-01 | 100.0% | 26.7% |
| 2lm9A00 | 1.20.58.970 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.72 | 56.0 | 4.28e-01 | 100.0% | 35.4% |
| 4iggA01 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.70 | 56.0 | 4.77e-01 | 100.0% | 56.7% |
| 1wjzA00 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.69 | 52.0 | 4.02e-01 | 100.0% | 34.0% |
| 2fe1A00 | 3.40.50.1010 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease | 0.67 | 56.0 | 3.87e-01 | 100.0% | 27.7% |
| 4okvE00 | 6.10.140.1890 | Special › Helix non-globular › Helix Hairpins › | 0.67 | 57.0 | 4.73e-01 | 100.0% | 55.4% |
| 3d36B02 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.65 | 48.0 | 4.38e-01 | 100.0% | 57.4% |
| 2db7A01 | 6.10.250.980 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.65 | 51.0 | 4.56e-01 | 100.0% | 60.4% |
| 2mpkA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.65 | 49.0 | 4.21e-01 | 100.0% | 52.7% |
| 2e62A01 | 6.10.140.420 | Special › Helix non-globular › Helix Hairpins › | 0.65 | 55.0 | 4.90e-01 | 100.0% | 82.7% |
| 4u2vA02 | 1.10.437.10 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like | 0.64 | 55.0 | 4.29e-01 | 100.0% | 52.5% |
| 6dv2G02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.63 | 51.0 | 3.30e-01 | 97.1% | 18.5% |
| 4hpqA00 | 1.10.10.2570 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.63 | 43.0 | 3.43e-01 | 71.4% | 59.4% |
| 3behB01 | 1.20.120.540 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels | 0.63 | 51.0 | 3.71e-01 | 100.0% | 29.9% |
| 1w0bA01 | 1.20.58.420 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP | 0.63 | 50.0 | 3.86e-01 | 97.1% | 65.2% |
| 1fcdC01 | 1.10.760.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain | 0.61 | 50.0 | 3.92e-01 | 94.3% | 51.3% |
| 2yf4F00 | 1.10.3420.10 | Mainly Alpha › Orthogonal Bundle › putative ntp pyrophosphohydrolase like fold › putative ntp pyrophosphohydrolase like domain | 0.59 | 42.0 | 3.14e-01 | 100.0% | 26.6% |
| 6e6oA00 | 1.20.50.10 | Mainly Alpha › Up-down Bundle › Pheromone ER-1 › Pheromone ER-1 | 0.57 | 42.0 | 4.10e-01 | 82.9% | 77.5% |
| 5dukB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 46.0 | 3.80e-01 | 100.0% | 55.2% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4022228 | 109.40.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › DNA polymerase alpha-binding protein Ctf4 C-terminal domain › DNA polymerase alpha-binding protein Ctf4 C-terminal domain › Ctf4_C | 0.96 | 87.0 | 5.53e-01 | 100.0% | 23.3% |
| 3720488 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.93 | 82.0 | 5.44e-01 | 100.0% | 26.9% |
| 4977102 | 603.2.1.0 ↗ | alpha bundles › STAT-like › STAT › STAT | 0.93 | 83.0 | 5.54e-01 | 100.0% | 28.0% |
| 3231463 | 632.8.1.2 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 › Alpha-2-MRAP_C | 0.92 | 81.0 | 5.84e-01 | 100.0% | 36.8% |
| 3724450 | 109.4.1.356 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans | 0.92 | 80.0 | 4.42e-01 | 100.0% | 7.6% |
| 3953342 | 101.1.4.61 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › PF27182 | 0.91 | 79.0 | 5.20e-01 | 100.0% | 25.9% |
| 3999039 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.91 | 79.0 | 5.40e-01 | 100.0% | 30.4% |
| 4009330 | 109.4.1.210 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_19 | 0.90 | 77.0 | 4.88e-01 | 100.0% | 21.2% |
| 3417442 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.89 | 76.0 | 4.41e-01 | 100.0% | 12.3% |
| 3882393 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.89 | 78.0 | 5.05e-01 | 100.0% | 23.3% |
| 3513582 | 192.8.1.36 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › M_domain | 0.87 | 74.0 | 5.21e-01 | 100.0% | 31.8% |
| 3330916 | 3846.1.1.0 ↗ | alpha bundles › IcmR › IcmR › IcmR | 0.87 | 76.0 | 6.57e-01 | 100.0% | 89.1% |
| 3173971 | 630.1.1.2 ↗ | a+b complex topology › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain › PF29521 | 0.87 | 75.0 | 5.01e-01 | 100.0% | 26.1% |
| 3906467 | 1008.1.1.106 ↗ | alpha bundles › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › CSN5_C | 0.85 | 73.0 | 5.41e-01 | 100.0% | 38.9% |
| 4210642 | 3755.1.1.12 ↗ | alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related › CheZ | 0.84 | 69.0 | 4.74e-01 | 100.0% | 26.9% |
| 5041087 | 5074.1.1.0 ↗ | extended segments › Bacterial light-harvesting complex subunits › Bacterial light-harvesting complex subunits › Bacterial light-harvesting complex subunits | 0.84 | 72.0 | 6.07e-01 | 100.0% | 88.3% |
| 1007238 | 3846.1.1.1 ↗ | alpha bundles › IcmR › IcmR › IcmR › IcmR | 0.84 | 72.0 | 6.09e-01 | 100.0% | 59.3% |
| 1176726 | 4325.1.1.2 ↗ | mixed a+b and a/b › YegP-like › YegP-like › YegP-like › P53_C | 0.81 | 69.0 | 5.54e-01 | 100.0% | 49.3% |
| 4142309 | 4163.1.1.1 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › Sld5 | 0.81 | 65.0 | 4.18e-01 | 100.0% | 20.0% |
| 3969538 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.80 | 65.0 | 5.83e-01 | 100.0% | 70.9% |
| 2476070 | 616.1.1.3 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › Flu_NS1 | 0.77 | 63.0 | 6.21e-01 | 100.0% | 92.1% |
| 3971539 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.76 | 63.0 | 5.04e-01 | 100.0% | 52.0% |
| 3213525 | 192.19.1.0 ↗ | alpha bundles › Long alpha-hairpin › YnzC-like › YnzC-like | 0.75 | 63.0 | 6.11e-01 | 97.1% | 85.0% |
| 3833733 | 5076.2.1.9 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ › Choline_transpo | 0.71 | 56.0 | 3.43e-01 | 100.0% | 13.5% |
| 4026671 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.71 | 57.0 | 4.14e-01 | 100.0% | 33.0% |
| 3704 | 601.1.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › Vinculin | 0.71 | 55.0 | 4.61e-01 | 100.0% | 48.6% |
| 3229793 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.70 | 56.0 | 4.22e-01 | 88.6% | 42.4% |
| 3283574 | 150.8.1.1 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › PPE › PPE › PPE | 0.69 | 54.0 | 3.49e-01 | 100.0% | 16.7% |
| 4591712 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.69 | 56.0 | 3.74e-01 | 100.0% | 21.8% |
| 3974625 | 5086.1.1.84 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_MFP_RND | 0.68 | 58.0 | 4.74e-01 | 100.0% | 51.4% |
| 3264735 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.65 | 47.0 | 4.45e-01 | 100.0% | 63.6% |
| 2409294 | 601.52.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › Flagellar hook-associated protein 1 helical domain › Flagellar hook-associated protein 1 helical domain › Flagellin_N | 0.64 | 52.0 | 3.68e-01 | 100.0% | 25.9% |
| 3691039 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.64 | 51.0 | 4.18e-01 | 100.0% | 45.0% |