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MW057857.1__QPB12153.1__X__00055

Bact-Vir

MW057857.1__QPB12153.1__X__00055

Identity

Accession:
MW057857 ↗
Kingdom:
phage

Quality

77.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Demerecviridae› Priunavirus› Providencia_phage_PSTCR5

TaxID: 2783547

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-59
PDB
Domain cluster: representative
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7y8sA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.74 57.0 4.80e-01 100.0% 50.5%
2h41A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.73 52.0 4.45e-01 100.0% 46.3%
1jx4A04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.69 57.0 4.86e-01 100.0% 56.1%
8afoA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.68 48.0 4.18e-01 100.0% 48.9%
5l09B00 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.68 53.0 3.75e-01 84.2% 29.9%
4u7cB04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.67 56.0 4.68e-01 100.0% 56.0%
4dqnA01 3.30.470.10 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain 0.67 51.0 3.74e-01 84.2% 78.5%
3cu7A05 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.66 50.0 4.11e-01 100.0% 44.3%
1mt1B00 3.50.20.10 Alpha Beta › 3-Layer(bba) Sandwich › Pyruvoyl-Dependent Histidine Decarboxylase; Chain B › Pyruvoyl-Dependent Histidine Decarboxylase, subunit B 0.64 56.0 4.53e-01 100.0% 60.7%
3hvnA01 3.90.840.10 Alpha Beta › Alpha-Beta Complex › HIV-1 Reverse Transcriptase; Chain A, domain 3 › Thiol-activated cytolysin superfamily/Thiol-activated cytolysin, alpha-beta domain 0.63 53.0 3.88e-01 100.0% 34.9%
1lxjA00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 51.0 4.27e-01 93.0% 68.9%
4xurA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.62 51.0 3.71e-01 100.0% 32.9%
1cbfA02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.61 43.0 3.47e-01 100.0% 36.4%
2qsdA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.59 49.0 4.70e-01 100.0% 80.6%
4p04A01 2.60.40.3100 Mainly Beta › Sandwich › Immunoglobulin-like › Arylsulphate sulphotransferase monomer, N-terminal domain 0.59 45.0 3.74e-01 100.0% 45.3%
3nd1A02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.57 42.0 3.52e-01 100.0% 42.7%
1rh8A00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.57 50.0 3.75e-01 100.0% 45.8%
4bwiB02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.56 37.0 2.71e-01 70.2% 98.4%
1tvgA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 43.0 3.43e-01 100.0% 38.2%
4pwuC00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.56 43.0 4.01e-01 91.2% 87.2%
2z5bA00 3.30.230.100 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.56 42.0 3.32e-01 84.2% 61.4%
1yd0A00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.55 40.0 3.59e-01 100.0% 51.7%
6s2wA01 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.54 46.0 4.15e-01 98.2% 78.0%
3liuA01 2.60.40.3160 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 40.0 3.30e-01 98.2% 40.7%
4bkwA03 3.30.500.40 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.54 36.0 2.88e-01 84.2% 31.0%
2nytD00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.52 43.0 3.16e-01 100.0% 73.7%
2z5bB01 3.30.230.90 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.52 38.0 3.15e-01 82.5% 67.2%
2wzpP01 2.40.30.210 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.52 45.0 3.68e-01 100.0% 62.4%
3b2dC00 2.60.40.770 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 42.0 3.36e-01 100.0% 49.6%
7bv5D01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.51 42.0 3.18e-01 100.0% 40.5%
1mzkA00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.51 43.0 3.47e-01 100.0% 95.9%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3600531 4012.3.1.0 ↗ a+b two layers › SSHS domain › SSHS domain in CRISPR-associated endonuclease Cas9 › SSHS domain in CRISPR-associated endonuclease Cas9 0.66 53.0 5.49e-01 100.0% 96.2%
4542564 11.1.1.1059 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3, Ig_3 0.65 56.0 3.39e-01 100.0% 13.8%
4944411 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.62 43.0 3.28e-01 73.7% 38.5%
4162075 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.62 54.0 4.20e-01 100.0% 47.2%
3478358 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 52.0 4.13e-01 100.0% 52.0%
5049138 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 44.0 3.44e-01 84.2% 37.8%
3594101 301.1.1.0 ↗ a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like 0.57 40.0 3.06e-01 100.0% 28.4%
2579422 4326.1.1.1 ↗ a+b two layers › ERH-like › ERH-like › ERH-like › ER 0.55 48.0 4.10e-01 100.0% 70.2%
4013678 226.1.1.0 ↗ a+b two layers › POZ domain › POZ domain › POZ domain 0.55 46.0 3.72e-01 100.0% 50.4%
3862051 11.1.4.78 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › NOMO_8th 0.55 48.0 3.67e-01 100.0% 67.4%
3580369 4357.1.1.0 ↗ beta barrels › WWE domain › WWE domain › WWE domain 0.55 47.0 3.46e-01 100.0% 53.4%
3535501 221.1.1.76 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 0.54 40.0 3.39e-01 100.0% 42.6%
3997516 221.1.1.76 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 0.53 41.0 3.46e-01 100.0% 46.1%
3874464 304.48.1.1 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.53 42.0 2.69e-01 100.0% 15.5%
4931921 7510.1.1.0 ↗ a/b three-layered sandwiches › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like 0.53 43.0 3.38e-01 98.2% 82.1%
3928221 4.1.1.310 ↗ beta barrels › SH3 › SH3 › SH3 › PF26050 0.52 35.0 2.74e-01 70.2% 95.7%
3594014 2007.2.3.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II 0.52 42.0 2.86e-01 93.0% 57.1%
5022263 322.1.1.2 ↗ a+b two layers › HPr-like › HPr-like › HPr-like › 3H 0.51 40.0 3.45e-01 100.0% 50.0%
3060789 102.9.1.1 ↗ alpha arrays › HhH/H2TH › Cdc45 CID domain › Cdc45 CID domain › CDC45 0.51 41.0 3.47e-01 91.2% 71.0%