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MW057857.1__QPB12154.1__X__00056

Bact-Vir

MW057857.1__QPB12154.1__X__00056

Identity

Accession:
MW057857 ↗
Kingdom:
phage

Quality

89.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Demerecviridae› Priunavirus› Providencia_phage_PSTCR5

TaxID: 2783547

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-73
PDB
Domain cluster: rep: NC_047778.1__YP_009787312.1__QLL94_gp12__00012__D2-66
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2m3xC02 2.40.10.360 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.80 41.0 4.17e-01 82.9% 50.7%
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.72 48.0 5.28e-01 100.0% 89.1%
7kfuC01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.65 40.0 4.00e-01 90.0% 58.7%
2o07A01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.61 42.0 4.47e-01 91.4% 86.4%
1xipA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 43.0 2.69e-01 92.9% 14.2%
2vb6A01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.61 41.0 4.45e-01 100.0% 90.7%
1mixA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 51.0 4.66e-01 94.3% 94.6%
8d3lA01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.60 39.0 3.69e-01 92.9% 53.4%
4n06A01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.60 38.0 3.66e-01 90.0% 54.9%
1h4rA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 49.0 4.58e-01 94.3% 95.6%
5xbfA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 49.0 4.61e-01 94.3% 95.5%
4py5A01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.58 37.0 3.68e-01 75.7% 62.5%
2z4hA01 2.40.128.300 Mainly Beta › Beta Barrel › Lipocalin › NlpE, N-terminal domain 0.58 45.0 4.33e-01 84.3% 94.9%
3o4fC01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.57 38.0 4.24e-01 90.0% 96.1%
1inlC02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.57 40.0 4.12e-01 91.4% 81.2%
2e5wA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.56 38.0 4.10e-01 91.4% 89.3%
5uc6A00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.56 46.0 3.65e-01 92.9% 96.0%
2p4tA00 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.56 38.0 4.04e-01 100.0% 86.2%
1iy9A02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.56 38.0 4.13e-01 91.4% 96.2%
2cmgA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.56 36.0 3.99e-01 87.1% 92.2%
2e12A00 2.30.30.720 Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3247) 0.55 46.0 4.24e-01 100.0% 71.0%
3c6kA02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.55 37.0 3.98e-01 90.0% 87.5%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 35.0 3.79e-01 98.6% 82.1%
1efzA00 3.20.20.105 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Queuine tRNA-ribosyltransferase-like 0.55 39.0 2.50e-01 75.7% 32.0%
1uirA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.55 37.0 4.02e-01 91.4% 94.2%
2dhkA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 44.0 4.01e-01 92.9% 95.0%
1fx7B03 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.54 44.0 4.29e-01 100.0% 83.7%
2wmmA02 3.30.70.3500 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › MukB, hinge domain 0.54 41.0 3.54e-01 82.9% 99.1%
1tqzA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 44.0 3.75e-01 97.1% 95.9%
3teeA02 2.30.30.760 Mainly Beta › Roll › SH3 type barrels. › 0.52 36.0 3.56e-01 95.7% 68.5%
3vn5A01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.52 33.0 3.34e-01 75.7% 63.8%
1gqyB02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.51 41.0 3.03e-01 91.4% 77.4%
5ocqA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 44.0 3.02e-01 100.0% 60.9%
2ymsC00 2.40.10.480 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.51 42.0 4.13e-01 90.0% 88.0%
2ovrB02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 42.0 2.68e-01 90.0% 19.8%
1nr0A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 42.0 2.71e-01 90.0% 23.1%
1ssfA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 34.0 3.67e-01 100.0% 90.9%
2ougA00 3.30.70.940 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › NusG, N-terminal domain 0.51 45.0 3.58e-01 100.0% 61.7%
4k22B01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 42.0 2.98e-01 97.1% 53.9%
4bpzA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 43.0 3.03e-01 100.0% 50.2%
1l9fA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 42.0 3.14e-01 95.7% 58.2%
3d1cA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 43.0 3.77e-01 100.0% 97.4%
2vouB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 42.0 2.94e-01 95.7% 52.9%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4995694 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.86 61.0 6.83e-01 100.0% 94.5%
3712219 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.74 52.0 5.39e-01 100.0% 80.0%
5023458 56.2.1.1 ↗ beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › CO dehydrogenase accessory protein CooT › CO dehydrogenase accessory protein CooT › CooT 0.73 48.0 5.17e-01 100.0% 81.0%
4987919 56.2.1.1 ↗ beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › CO dehydrogenase accessory protein CooT › CO dehydrogenase accessory protein CooT › CooT 0.72 48.0 5.14e-01 95.7% 82.8%
5077594 56.2.1.1 ↗ beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › CO dehydrogenase accessory protein CooT › CO dehydrogenase accessory protein CooT › CooT 0.70 46.0 5.08e-01 95.7% 87.3%
2596548 56.2.1.1 ↗ beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › CO dehydrogenase accessory protein CooT › CO dehydrogenase accessory protein CooT › CooT 0.70 53.0 5.32e-01 100.0% 80.0%
5058747 56.2.1.1 ↗ beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › CO dehydrogenase accessory protein CooT › CO dehydrogenase accessory protein CooT › CooT 0.69 46.0 4.95e-01 95.7% 82.8%
4982571 56.2.1.1 ↗ beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › CO dehydrogenase accessory protein CooT › CO dehydrogenase accessory protein CooT › CooT 0.69 46.0 4.95e-01 97.1% 82.8%
5032493 56.2.1.1 ↗ beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › CO dehydrogenase accessory protein CooT › CO dehydrogenase accessory protein CooT › CooT 0.69 46.0 4.88e-01 100.0% 81.4%
5016260 56.2.1.1 ↗ beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › CO dehydrogenase accessory protein CooT › CO dehydrogenase accessory protein CooT › CooT 0.69 45.0 4.80e-01 100.0% 79.7%
4941512 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 45.0 4.53e-01 100.0% 67.1%
5045214 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 47.0 4.76e-01 100.0% 72.9%
4939428 56.2.1.1 ↗ beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › CO dehydrogenase accessory protein CooT › CO dehydrogenase accessory protein CooT › CooT 0.68 46.0 4.90e-01 100.0% 83.3%
4998118 56.2.1.1 ↗ beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › CO dehydrogenase accessory protein CooT › CO dehydrogenase accessory protein CooT › CooT 0.66 47.0 4.81e-01 100.0% 80.0%
5066882 56.2.1.0 ↗ beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › CO dehydrogenase accessory protein CooT › CO dehydrogenase accessory protein CooT 0.65 44.0 5.04e-01 98.6% 98.0%
4970510 56.2.1.1 ↗ beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › CO dehydrogenase accessory protein CooT › CO dehydrogenase accessory protein CooT › CooT 0.64 45.0 4.64e-01 100.0% 80.0%
None — 0.63 44.0 3.40e-01 88.6% 34.2%
3931379 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 41.0 4.45e-01 90.0% 85.5%
5075769 56.2.1.1 ↗ beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › CO dehydrogenase accessory protein CooT › CO dehydrogenase accessory protein CooT › CooT 0.62 43.0 4.41e-01 100.0% 78.5%
4149829 220.1.1.114 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF5673 0.62 43.0 4.21e-01 72.9% 100.0%
3933539 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 45.0 4.61e-01 100.0% 86.2%
4982354 4.7.1.0 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.61 47.0 4.84e-01 100.0% 90.8%
3934192 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 44.0 4.61e-01 100.0% 91.7%
3926430 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 43.0 4.54e-01 100.0% 88.3%
3231448 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.59 50.0 3.85e-01 94.3% 52.7%
3241852 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.59 32.0 2.73e-01 88.6% 30.4%
3550644 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 39.0 4.28e-01 100.0% 87.3%
5002984 330.7.1.2 ↗ a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain › HicA_toxin 0.59 36.0 3.67e-01 77.1% 61.4%
3687350 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 40.0 4.38e-01 94.3% 90.9%
4260129 2484.1.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin 0.59 38.0 2.33e-01 100.0% 9.7%
4561487 3699.1.1.1 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.58 40.0 4.33e-01 91.4% 90.9%
1837476 331.1.1.6 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › DUF3378 0.58 37.0 3.76e-01 75.7% 67.2%
4874733 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 38.0 4.14e-01 100.0% 88.9%
3328685 3699.1.1.1 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.58 39.0 4.00e-01 90.0% 75.4%
3437430 3699.1.1.1 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.56 38.0 3.97e-01 91.4% 76.9%
3895142 5.1.3.216 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_HPS5 0.56 43.0 3.13e-01 81.4% 45.8%
1030876 3699.1.1.1 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.56 39.0 3.99e-01 91.4% 74.3%
5031673 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 48.0 4.28e-01 100.0% 70.5%
3789341 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.55 43.0 2.80e-01 87.1% 39.7%
3989395 4004.1.1.1 ↗ beta sandwiches › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › YegS_C 0.55 48.0 3.56e-01 100.0% 48.1%
4147528 4.1.1.307 ↗ beta barrels › SH3 › SH3 › SH3 › PF26132 0.55 48.0 4.83e-01 100.0% 100.0%
4947543 330.7.1.2 ↗ a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain › HicA_toxin 0.54 36.0 3.55e-01 70.0% 63.5%
3706998 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 37.0 3.90e-01 100.0% 85.0%
3171728 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.53 47.0 3.73e-01 100.0% 63.4%
3725153 4.1.1.286 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7072 0.53 36.0 3.51e-01 98.6% 62.5%
3592540 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 36.0 3.81e-01 100.0% 85.0%
3927520 3699.1.1.1 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.53 42.0 3.97e-01 91.4% 85.6%
5060347 101.8.1.4 ↗ alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › tRNA-synt_1f 0.52 38.0 2.33e-01 78.6% 29.4%
4027205 5.1.4.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.52 43.0 2.74e-01 90.0% 21.8%
4281581 5.1.4.254 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_NOL10_N 0.52 43.0 2.64e-01 90.0% 16.1%
4863931 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 37.0 3.84e-01 100.0% 83.6%
4773067 5.1.4.40 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_2 0.51 42.0 4.13e-01 90.0% 88.0%
3924808 719.2.1.0 ↗ beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like 0.51 43.0 4.10e-01 91.4% 86.3%
3630396 5.1.4.280 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › ANAPC4_WD40, Beta-prop_WDR36-Utp21_1st 0.51 43.0 2.83e-01 94.3% 24.8%
3408563 5.1.4.661 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR36-Utp21_1st 0.51 42.0 2.74e-01 90.0% 21.3%
4998989 3740.1.1.4 ↗ alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.51 44.0 2.93e-01 95.7% 49.1%
3553012 5.1.4.661 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR36-Utp21_1st 0.50 41.0 2.65e-01 90.0% 19.1%
3900236 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.50 37.0 3.95e-01 100.0% 95.0%
3761407 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.50 41.0 2.60e-01 90.0% 19.2%