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MW057858.1__QPB12388.1__X__00138

Bact-Vir

MW057858.1__QPB12388.1__X__00138

Identity

Accession:
MW057858 ↗
Kingdom:
phage

Quality

83.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Providencia_phage_PSTCR6

TaxID: 2783548

Cluster

View cluster (36 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 7-79
PDB
Domain cluster: rep: MW239124.1__QQG32192.1__CkP1_0225__00225__D6-80
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2k4yA00 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.69 55.0 5.25e-01 100.0% 74.4%
3e19B01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.68 54.0 5.69e-01 100.0% 98.4%
2k5fA01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.67 53.0 5.10e-01 100.0% 77.1%
6o5cA02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.66 52.0 5.19e-01 100.0% 84.2%
2k5iA01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.65 52.0 4.99e-01 100.0% 76.2%
6e55A01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.65 53.0 5.29e-01 100.0% 89.2%
3hrsA02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.64 50.0 5.02e-01 100.0% 84.2%
3bdlA03 2.40.50.90 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.63 48.0 4.11e-01 83.6% 74.4%
4dq2A03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.62 38.0 4.50e-01 98.6% 95.7%
1mo9A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 48.0 3.96e-01 94.5% 49.6%
4hspA00 2.40.50.870 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Protein of unknown function (DUF3299) 0.57 39.0 3.09e-01 71.2% 38.3%
3d79A01 3.10.450.120 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Pre-PUA domain; domain 1 0.56 42.0 4.27e-01 93.2% 82.4%
6fhoA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 47.0 3.48e-01 95.9% 58.6%
1f8wA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 45.0 3.68e-01 100.0% 84.0%
3cgbA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 44.0 3.62e-01 98.6% 82.6%
6gnaA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 45.0 4.01e-01 98.6% 95.3%
ECOD (41)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
168876 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.69 55.0 5.44e-01 100.0% 82.1%
5012053 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.69 54.0 5.46e-01 100.0% 85.1%
5042313 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.69 54.0 5.39e-01 100.0% 82.7%
4947702 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 56.0 5.55e-01 100.0% 86.7%
4030943 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.68 55.0 5.36e-01 100.0% 81.0%
5001481 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.68 55.0 5.49e-01 100.0% 86.7%
4984135 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.68 56.0 5.33e-01 100.0% 77.4%
5072519 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.68 55.0 5.51e-01 100.0% 86.7%
5078626 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.68 54.0 5.41e-01 100.0% 86.5%
3386779 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.68 53.0 5.36e-01 100.0% 86.5%
5049033 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.67 54.0 5.40e-01 100.0% 85.3%
3589954 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.67 53.0 5.32e-01 100.0% 85.3%
1756103 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.67 53.0 5.34e-01 100.0% 87.7%
5027286 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.67 53.0 5.10e-01 100.0% 75.3%
3979986 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.67 55.0 5.50e-01 100.0% 88.0%
4984041 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.66 52.0 5.24e-01 100.0% 85.3%
4978819 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.66 53.0 5.20e-01 100.0% 81.2%
4930563 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.66 50.0 5.15e-01 100.0% 85.7%
5055435 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.66 52.0 5.29e-01 98.6% 90.0%
5040422 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.66 52.0 5.21e-01 100.0% 85.3%
2499682 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.66 52.0 5.15e-01 100.0% 82.1%
1174965 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.65 52.0 5.13e-01 100.0% 83.1%
4033110 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.65 52.0 5.24e-01 100.0% 86.7%
4952214 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.65 51.0 5.14e-01 100.0% 85.3%
1678740 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.65 51.0 5.09e-01 100.0% 82.1%
3839852 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.65 52.0 5.17e-01 100.0% 86.7%
2499543 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.65 53.0 5.15e-01 100.0% 82.5%
4952478 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.65 51.0 5.09e-01 98.6% 84.0%
135285 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.64 50.0 4.98e-01 100.0% 82.1%
5030535 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.62 50.0 4.99e-01 100.0% 86.7%
3355992 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.61 36.0 4.35e-01 79.5% 95.6%
4363301 3374.1.1.3 ↗ a+b complex topology › spore cortex-lytic enzyme catalytic domain › spore cortex-lytic enzyme catalytic domain › spore cortex-lytic enzyme catalytic domain › SpoIID 0.59 41.0 2.83e-01 74.0% 27.3%
4129578 2003.1.2.21 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Trp_halogenase 0.58 48.0 3.03e-01 94.5% 58.8%
1879661 3374.1.1.3 ↗ a+b complex topology › spore cortex-lytic enzyme catalytic domain › spore cortex-lytic enzyme catalytic domain › spore cortex-lytic enzyme catalytic domain › SpoIID 0.57 42.0 2.84e-01 79.5% 25.6%
4947899 243.6.1.12 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › PUA 0.55 43.0 4.11e-01 84.9% 75.3%
4281059 2.6.1.0 ↗ beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.54 40.0 3.60e-01 82.2% 87.3%
4000752 2003.1.3.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.54 45.0 3.15e-01 95.9% 76.5%
3455239 292.2.1.12 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › Calmod_bind_C 0.54 36.0 3.92e-01 98.6% 85.0%
5061123 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.54 46.0 3.88e-01 98.6% 96.9%
3930901 394.1.1.0 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins 0.52 44.0 3.44e-01 97.3% 81.8%
5003911 131.1.1.3 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD 0.50 36.0 2.34e-01 79.5% 86.8%
D2 medium residues 85-125
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u7kA00 1.10.375.10 Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein 0.70 52.0 3.82e-01 87.8% 36.6%
3laaA00 2.150.10.10 Mainly Beta › 2 Solenoid › Alkaline Protease, subunit P, domain 1 › Serralysin-like metalloprotease, C-terminal 0.68 48.0 3.24e-01 78.0% 18.9%
2r1fA03 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.67 46.0 4.69e-01 75.6% 79.5%
2oq2D00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.65 50.0 3.11e-01 87.8% 93.1%
3hh2D04 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.65 42.0 3.61e-01 87.8% 38.6%
5x9vA01 1.10.560.10 Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain 0.62 47.0 2.98e-01 87.8% 24.9%
1bjtA05 3.90.199.10 Alpha Beta › Alpha-Beta Complex › Topoisomerase II; domain 5 › Topoisomerase II, domain 5 0.58 38.0 2.46e-01 70.7% 12.0%
6zhhA01 3.40.1110.10 Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N 0.58 46.0 3.08e-01 92.7% 74.4%
5g5tA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.58 46.0 3.25e-01 100.0% 100.0%
2yfvC00 6.10.250.2010 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.57 38.0 3.34e-01 85.4% 48.3%
2q2tA03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 41.0 3.09e-01 78.0% 68.9%
2ba1D01 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.56 47.0 3.00e-01 100.0% 39.6%
3u6uC00 3.40.1160.10 Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like 0.55 45.0 2.76e-01 92.7% 16.2%
1pmtA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.54 41.0 3.25e-01 100.0% 38.3%
3mmyB00 1.10.10.2360 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.54 38.0 3.55e-01 75.6% 98.0%
2x4lA01 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.53 40.0 2.97e-01 95.1% 97.8%
1itcA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.52 42.0 2.48e-01 100.0% 25.2%
2qqrA02 3.10.330.70 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.51 38.0 3.65e-01 87.8% 94.3%
1wh2A01 3.30.1490.40 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain 0.51 40.0 3.66e-01 97.6% 80.3%
3ce2A02 1.10.287.830 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › putative peptidase helix hairpin domain like 0.51 37.0 3.72e-01 100.0% 91.5%
3v33B00 3.40.50.11980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.50 41.0 2.86e-01 97.6% 88.1%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
56911 170.2.1.0 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain 0.70 53.0 3.84e-01 87.8% 36.6%
145432 170.2.1.2 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain › Gag_p30 0.70 52.0 3.81e-01 87.8% 36.4%
3930599 386.1.1.4 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.67 57.0 5.02e-01 100.0% 96.9%
4977389 3374.1.1.1 ↗ a+b complex topology › spore cortex-lytic enzyme catalytic domain › spore cortex-lytic enzyme catalytic domain › spore cortex-lytic enzyme catalytic domain › YceG 0.65 43.0 3.05e-01 70.7% 21.3%
5004344 593.1.1.1 ↗ alpha bundles › GroEL equatorial domain-like › GroEL equatorial domain-like › GroEL equatorial domain-like › Cpn60_TCP1 0.63 49.0 3.05e-01 87.8% 24.5%
4001939 386.1.1.4 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.63 52.0 4.47e-01 100.0% 80.0%
5078195 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 46.0 3.89e-01 87.8% 84.0%
3652359 4016.1.1.1 ↗ alpha bundles › alpha-helical domain in type II DNA topoisomerase › alpha-helical domain in type II DNA topoisomerase › alpha-helical domain in type II DNA topoisomerase › DNA_topoisoIV 0.61 41.0 2.82e-01 73.2% 18.2%
3579437 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.61 49.0 4.30e-01 100.0% 77.1%
3597863 622.4.1.0 ↗ alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related 0.59 46.0 3.22e-01 90.2% 52.9%
3257319 221.1.1.4 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 0.58 43.0 3.39e-01 85.4% 41.0%
4196780 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.57 42.0 4.41e-01 92.7% 97.1%
3957541 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.57 40.0 2.81e-01 75.6% 45.5%
4039872 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.57 42.0 4.16e-01 100.0% 84.0%
4957877 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.55 42.0 3.65e-01 87.8% 77.1%
3266488 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 43.0 3.85e-01 90.2% 90.0%
3262092 3264.1.1.0 ↗ 0.53 45.0 3.03e-01 100.0% 76.5%
4247937 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.52 46.0 3.40e-01 100.0% 79.1%
4610901 4180.1.1.1 ↗ a+b two layers › SpoVG-like › SpoVG-like › SpoVG-like › SpoVG 0.52 42.0 3.51e-01 100.0% 75.3%
3595399 593.1.1.0 ↗ alpha bundles › GroEL equatorial domain-like › GroEL equatorial domain-like › GroEL equatorial domain-like 0.52 39.0 2.50e-01 92.7% 21.9%
4037529 4180.1.1.1 ↗ a+b two layers › SpoVG-like › SpoVG-like › SpoVG-like › SpoVG 0.51 41.0 3.33e-01 100.0% 67.4%