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MW057858.1__QPB12417.1__X__00167

Bact-Vir

MW057858.1__QPB12417.1__X__00167

Identity

Accession:
MW057858 ↗
Kingdom:
phage

Quality

85.3 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-84
PDB
Domain cluster: representative
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2fphX01 3.30.1370.160 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.74 57.0 5.82e-01 85.2% 85.7%
2lrrA00 3.30.1370.50 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain 0.74 52.0 5.57e-01 80.2% 85.7%
1jo0A00 3.30.110.60 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › YhbY-like 0.72 51.0 4.82e-01 79.0% 61.9%
1xmxA03 1.10.10.680 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Hypothetical protein VC1899 (Restriction endonuclease-like) 0.71 50.0 4.85e-01 85.2% 66.3%
4nzrM03 3.30.110.180 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › 0.71 57.0 5.00e-01 87.7% 66.7%
2cpmA00 3.30.1370.50 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain 0.71 58.0 5.54e-01 93.8% 76.6%
1i94H01 3.30.1370.30 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.70 50.0 5.11e-01 77.8% 76.9%
3hz7A00 3.30.110.40 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › TusA-like domain 0.69 50.0 5.21e-01 79.0% 84.9%
3grzB00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.68 49.0 3.70e-01 79.0% 31.6%
4u1qA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.68 51.0 3.88e-01 79.0% 39.6%
2pt7G02 3.30.1370.180 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.68 52.0 5.59e-01 82.7% 100.0%
3cuqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 51.0 5.14e-01 84.0% 97.5%
2gukA00 3.30.2190.10 Alpha Beta › 2-Layer Sandwich › PG1857-like › PG1857-like 0.65 48.0 4.39e-01 82.7% 57.7%
1zkdA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.65 53.0 4.20e-01 90.1% 59.3%
2nxcA03 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.65 46.0 3.82e-01 77.8% 40.5%
4qbuA03 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.64 36.0 4.01e-01 75.3% 68.2%
7ovuA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.64 48.0 3.68e-01 82.7% 34.2%
5xnsC00 1.10.10.580 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E 0.63 49.0 5.22e-01 84.0% 97.1%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.63 46.0 3.70e-01 79.0% 82.6%
2bv6A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 45.0 3.78e-01 75.3% 44.9%
7dvrA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 44.0 3.66e-01 75.3% 44.0%
4dzrA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.61 46.0 3.71e-01 82.7% 40.5%
1zhvA00 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.61 34.0 2.87e-01 72.8% 32.8%
4ig1A00 3.10.520.10 Alpha Beta › Roll › T-fold › ApbE-like domains 0.60 53.0 3.58e-01 100.0% 37.5%
1s2oA02 3.90.1070.10 Alpha Beta › Alpha-Beta Complex › Hypothetical Protein Ta0175; Chain: A, domain 2 › 0.59 41.0 4.36e-01 72.8% 87.3%
3pqvC01 3.65.10.20 Alpha Beta › Alpha-beta prism › UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain › RNA 3'-terminal phosphate cyclase domain 0.59 44.0 3.16e-01 81.5% 95.3%
1p4xA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 44.0 3.88e-01 84.0% 60.2%
3v8hC00 3.30.572.10 Alpha Beta › 2-Layer Sandwich › Thymidylate Synthase; Chain A › Thymidylate synthase/dCMP hydroxymethylase domain 0.57 44.0 3.05e-01 82.7% 70.1%
4qpkB02 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.56 40.0 3.44e-01 75.3% 98.5%
7n0eB02 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.56 40.0 3.53e-01 76.5% 63.9%
1p4xA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 44.0 3.83e-01 87.7% 56.7%
4r3aA02 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.55 40.0 3.42e-01 77.8% 91.5%
2dchX02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.55 43.0 3.91e-01 85.2% 70.3%
3zxoA00 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.55 39.0 3.40e-01 72.8% 66.4%
3ehgA00 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.55 39.0 3.37e-01 72.8% 67.2%
3tviA02 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.55 36.0 2.92e-01 74.1% 34.0%
5idmA00 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.55 40.0 3.11e-01 76.5% 66.7%
2dt9A01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.55 37.0 3.86e-01 77.8% 77.0%
1zvpD00 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.55 43.0 3.81e-01 90.1% 87.0%
2imqX00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.54 43.0 3.01e-01 87.7% 40.0%
4v19J00 3.30.70.1730 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein L10, N-terminal RNA-binding domain 0.54 43.0 3.52e-01 90.1% 67.3%
4gt8A00 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.54 40.0 3.44e-01 79.0% 96.2%
2pulB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 32.0 3.08e-01 74.1% 51.1%
2hoeA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 37.0 4.08e-01 79.0% 100.0%
5eriA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 39.0 3.26e-01 79.0% 49.0%
6qrjA01 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.53 37.0 3.15e-01 74.1% 68.1%
5hvqC01 3.90.1150.220 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.53 39.0 3.94e-01 80.2% 95.0%
4kp4A02 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.53 38.0 3.19e-01 76.5% 68.2%
3l7wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 41.0 3.80e-01 87.7% 66.7%
8agaA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 40.0 3.56e-01 87.7% 59.5%
1j5uA01 3.55.10.10 Alpha Beta › 3-Layer(bab) Sandwich › Archease, Possible Chaperone; Chain: A; domain 1 › Archease domain 0.51 39.0 3.47e-01 81.5% 90.6%
ECOD (69)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3992039 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.81 68.0 6.50e-01 92.6% 78.7%
3218484 320.1.1.1 a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.80 63.0 6.68e-01 92.6% 97.1%
4014318 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.79 59.0 5.84e-01 86.4% 75.3%
3395627 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.79 65.0 6.74e-01 97.5% 97.3%
3174787 320.1.1.1 a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.78 59.0 5.60e-01 86.4% 68.4%
3561915 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.78 57.0 5.87e-01 81.5% 82.7%
3785289 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.77 54.0 5.92e-01 77.8% 90.8%
3637371 320.1.1.1 a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.77 57.0 5.27e-01 85.2% 61.0%
3386910 328.5.1.1 a+b two layers › IF3-like › SirA-like › SirA-like › TusA 0.77 55.0 5.82e-01 79.0% 85.7%
3403645 320.1.1.1 a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.77 53.0 6.03e-01 80.2% 96.7%
1165035 320.1.1.2 a+b two layers › R3H domain-like › R3H domain › R3H domain › HP1451_C 0.76 60.0 6.41e-01 87.7% 100.0%
3552466 320.1.1.1 a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.75 57.0 6.09e-01 85.2% 92.9%
3595328 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.75 57.0 5.24e-01 88.9% 62.9%
5060689 328.5.1.1 a+b two layers › IF3-like › SirA-like › SirA-like › TusA 0.75 53.0 5.97e-01 79.0% 100.0%
3595128 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.74 53.0 5.79e-01 82.7% 93.8%
3581967 320.1.1.1 a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.74 55.0 5.96e-01 82.7% 96.9%
5083808 328.1.1.0 a+b two layers › IF3-like › AlbA-like › AlbA-like 0.74 53.0 5.60e-01 80.2% 85.7%
3711102 320.1.1.1 a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.74 56.0 5.28e-01 86.4% 66.0%
3198781 320.1.1.1 a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.74 51.0 5.02e-01 77.8% 68.2%
3871908 320.1.1.1 a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.73 58.0 5.18e-01 85.2% 61.9%
3578925 320.1.1.1 a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.73 58.0 5.30e-01 85.2% 67.6%
5055166 328.1.1.0 a+b two layers › IF3-like › AlbA-like › AlbA-like 0.73 52.0 5.59e-01 79.0% 87.1%
3737985 320.1.1.1 a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.73 55.0 5.13e-01 86.4% 65.0%
4608678 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.73 51.0 5.20e-01 77.8% 75.0%
3740807 320.1.1.1 a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.73 55.0 5.43e-01 86.4% 76.5%
3262749 320.1.1.1 a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.73 58.0 5.32e-01 86.4% 69.5%
3260870 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.72 54.0 5.24e-01 81.5% 71.1%
5010300 328.1.1.0 a+b two layers › IF3-like › AlbA-like › AlbA-like 0.72 52.0 5.37e-01 79.0% 81.3%
3624413 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.72 52.0 5.72e-01 76.5% 95.4%
3250910 320.1.1.1 a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.72 54.0 5.79e-01 85.2% 94.3%
4228350 320.1.1.1 a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.72 53.0 5.81e-01 84.0% 98.5%
3780948 320.1.1.1 a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.72 65.0 6.06e-01 100.0% 82.0%
3357930 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.71 56.0 5.78e-01 88.9% 90.7%
4981701 328.5.1.1 a+b two layers › IF3-like › SirA-like › SirA-like › TusA 0.71 50.0 5.52e-01 82.7% 92.3%
3226102 320.1.1.1 a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.70 56.0 5.15e-01 87.7% 68.5%
3416416 320.1.1.1 a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.70 57.0 5.25e-01 88.9% 69.5%
5010185 328.5.1.0 a+b two layers › IF3-like › SirA-like › SirA-like 0.70 47.0 4.99e-01 79.0% 80.0%
4979496 328.9.1.0 a+b two layers › IF3-like › SepF C-terminal domain › SepF C-terminal domain 0.70 48.0 5.25e-01 77.8% 89.2%
3481394 320.1.1.1 a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.70 55.0 4.86e-01 86.4% 70.0%
4387539 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.70 47.0 3.98e-01 77.8% 43.1%
3926462 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.69 52.0 4.84e-01 85.2% 62.9%
4983980 328.1.1.0 a+b two layers › IF3-like › AlbA-like › AlbA-like 0.69 49.0 5.21e-01 79.0% 87.1%
3494198 328.7.1.0 a+b two layers › IF3-like › Smr domain › Smr domain 0.69 62.0 4.72e-01 100.0% 72.6%
3517969 320.1.1.1 a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.69 55.0 5.30e-01 88.9% 84.2%
135569 328.5.1.1 a+b two layers › IF3-like › SirA-like › SirA-like › TusA 0.69 50.0 5.18e-01 79.0% 83.8%
4393799 320.2.1.1 a+b two layers › R3H domain-like › Ribosomal protein S8, N-terminal domain › Ribosomal protein S8, N-terminal domain › Ribosomal_S8 0.69 48.0 5.11e-01 74.1% 84.3%
4978851 328.1.1.0 a+b two layers › IF3-like › AlbA-like › AlbA-like 0.69 48.0 5.01e-01 79.0% 80.0%
3410614 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.68 56.0 5.21e-01 95.1% 70.5%
4968658 328.1.1.0 a+b two layers › IF3-like › AlbA-like › AlbA-like 0.68 49.0 5.10e-01 81.5% 82.7%
5012030 328.5.1.1 a+b two layers › IF3-like › SirA-like › SirA-like › TusA 0.67 48.0 5.05e-01 82.7% 85.7%
4933974 328.9.1.0 a+b two layers › IF3-like › SepF C-terminal domain › SepF C-terminal domain 0.67 46.0 4.97e-01 77.8% 87.7%
4988837 328.1.1.0 a+b two layers › IF3-like › AlbA-like › AlbA-like 0.67 47.0 5.04e-01 77.8% 85.7%
5076758 328.9.1.0 a+b two layers › IF3-like › SepF C-terminal domain › SepF C-terminal domain 0.67 48.0 5.00e-01 81.5% 82.7%
4161632 2003.1.5.55 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PrmA 0.67 47.0 3.59e-01 79.0% 31.3%
5056562 2003.1.5.82 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_31 0.67 48.0 3.82e-01 77.8% 37.1%
3737998 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.66 52.0 5.14e-01 85.2% 84.7%
3602220 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.66 48.0 4.75e-01 76.5% 78.8%
4950695 328.1.1.0 a+b two layers › IF3-like › AlbA-like › AlbA-like 0.65 47.0 4.88e-01 81.5% 82.7%
3799570 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.61 44.0 3.71e-01 77.8% 84.1%
4945934 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.61 47.0 4.19e-01 82.7% 58.3%
4981661 304.57.1.0 a+b two layers › Alpha-beta plaits › Rpp14/Pop5-like › Rpp14/Pop5-like 0.60 38.0 3.78e-01 77.8% 61.2%
3291043 225.1.1.3 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.59 43.0 3.58e-01 76.5% 66.7%
5036673 328.6.1.1 a+b two layers › IF3-like › EPT/RTPC-like › EPT/RTPC-like › EPSP_synthase 0.59 49.0 3.63e-01 93.8% 93.6%
4302533 225.1.1.3 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.58 41.0 3.46e-01 74.1% 66.4%
4962984 304.8.1.10 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_7 0.57 41.0 4.19e-01 86.4% 77.5%
3971474 225.1.1.3 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.55 39.0 3.30e-01 74.1% 62.9%
3987424 225.1.1.3 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.55 40.0 3.29e-01 76.5% 69.2%
3392791 246.3.1.4 a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos2 0.54 44.0 2.96e-01 90.1% 36.1%
3290340 225.1.1.3 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.53 37.0 3.14e-01 72.8% 61.4%